Wall clock time and date at job start Mon Mar 30 2020 07:01:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.69679 * 2 1 4 4 C 1.53632 * 109.74035 * 239.45985 * 2 1 3 5 5 C 1.53043 * 109.23684 * 295.11912 * 4 2 1 6 6 C 1.53039 * 109.53408 * 298.50812 * 5 4 2 7 7 C 1.53182 * 109.31475 * 61.37158 * 6 5 4 8 8 H 1.09003 * 109.59184 * 65.14748 * 7 6 5 9 9 C 1.52997 * 109.59060 * 185.57509 * 7 6 5 10 10 N 1.46918 * 109.58758 * 120.35741 * 2 1 3 11 11 C 1.34779 * 120.63353 * 246.19937 * 10 2 1 12 12 O 1.21281 * 119.99842 * 173.92953 * 11 10 2 13 13 C 1.50697 * 119.99887 * 353.93494 * 11 10 2 14 14 C 1.53000 * 109.47248 * 179.97438 * 13 11 10 15 15 C 1.53000 * 109.47208 * 179.97438 * 14 13 11 16 16 C 1.50698 * 109.47100 * 180.02562 * 15 14 13 17 17 H 1.07999 * 119.99851 * 0.02562 * 16 15 14 18 18 C 1.37880 * 119.99802 * 180.02562 * 16 15 14 19 19 N 1.31513 * 119.99849 * 0.02562 * 18 16 15 20 20 Si 1.86805 * 119.99641 * 180.02562 * 18 16 15 21 21 H 1.48500 * 109.46723 * 90.00243 * 20 18 16 22 22 H 1.48496 * 109.46790 * 210.00412 * 20 18 16 23 23 H 1.48499 * 109.47328 * 330.00415 * 20 18 16 24 24 H 1.08997 * 109.47377 * 299.64022 * 1 2 3 25 25 H 1.08999 * 109.47259 * 59.64328 * 1 2 3 26 26 H 1.09005 * 109.47178 * 179.63615 * 1 2 3 27 27 H 1.08991 * 109.63275 * 175.12591 * 4 2 1 28 28 H 1.08997 * 109.43119 * 54.98497 * 4 2 1 29 29 H 1.09002 * 109.45633 * 178.49094 * 5 4 2 30 30 H 1.08993 * 109.45229 * 58.52260 * 5 4 2 31 31 H 1.09004 * 109.50160 * 301.41422 * 6 5 4 32 32 H 1.09008 * 109.49388 * 181.31999 * 6 5 4 33 33 H 1.09003 * 109.47621 * 185.08610 * 9 7 6 34 34 H 1.09006 * 109.47123 * 305.08609 * 9 7 6 35 35 H 1.08993 * 109.47438 * 65.07994 * 9 7 6 36 36 H 1.08999 * 109.47243 * 59.99275 * 13 11 10 37 37 H 1.08997 * 109.47106 * 299.99697 * 13 11 10 38 38 H 1.09009 * 109.46309 * 60.00060 * 14 13 11 39 39 H 1.08997 * 109.47385 * 300.00219 * 14 13 11 40 40 H 1.08999 * 109.46668 * 60.00664 * 15 14 13 41 41 H 1.08997 * 109.47457 * 300.00580 * 15 14 13 42 42 H 0.96998 * 119.99242 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8974 1.0262 0.0000 4 6 2.0489 -0.7348 -1.2454 5 6 1.6418 -2.2081 -1.1678 6 6 2.2757 -2.8496 0.0686 7 6 1.7643 -2.1400 1.3261 8 1 0.6930 -2.3109 1.4321 9 6 2.4972 -2.6821 2.5549 10 7 2.0225 -0.6995 1.1944 11 6 2.6937 -0.0317 2.1536 12 8 2.9988 -0.5942 3.1838 13 6 3.0648 1.4141 1.9459 14 6 3.8142 1.9300 3.1760 15 6 4.1915 3.3976 2.9649 16 6 4.9302 3.9056 4.1763 17 1 5.1126 3.2473 5.0128 18 6 5.3730 5.2107 4.2166 19 7 5.1504 6.0124 3.1980 20 14 6.2893 5.8401 5.7179 21 1 7.7460 5.6128 5.5400 22 1 6.0314 7.2933 5.8818 23 1 5.8189 5.1146 6.9251 24 1 -0.3634 0.5082 0.8932 25 1 -0.3634 0.5194 -0.8868 26 1 -0.3634 -1.0277 -0.0065 27 1 3.1353 -0.6593 -1.2891 28 1 1.6162 -0.2844 -2.1387 29 1 1.9851 -2.7272 -2.0627 30 1 0.5566 -2.2817 -1.0991 31 1 3.3601 -2.7543 0.0125 32 1 2.0045 -3.9046 0.1105 33 1 2.0699 -2.2424 3.4562 34 1 2.3895 -3.7661 2.5933 35 1 3.5542 -2.4241 2.4907 36 1 2.1601 2.0038 1.7981 37 1 3.7037 1.5026 1.0673 38 1 4.7189 1.3402 3.3240 39 1 3.1750 1.8415 4.0545 40 1 3.2870 3.9876 2.8167 41 1 4.8308 3.4858 2.0866 42 1 5.4616 6.9306 3.2266 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593958397.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:52 Heat of formation + Delta-G solvation = -55.717117 kcal Electronic energy + Delta-G solvation = -19464.292630 eV Core-core repulsion = 16636.543588 eV Total energy + Delta-G solvation = -2827.749042 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.56157 -37.65383 -34.49071 -33.44048 -32.79510 -31.83717 -29.26067 -27.56764 -26.60492 -24.16903 -23.43151 -22.00451 -20.78014 -19.88134 -18.22163 -16.66083 -16.21171 -15.98564 -15.34477 -14.99770 -14.42447 -14.26388 -14.17623 -13.59026 -13.48935 -12.95801 -12.86045 -12.51964 -12.18711 -11.98748 -11.87293 -11.82008 -11.59978 -11.30434 -11.12305 -10.96910 -10.77886 -10.75541 -10.66655 -10.50089 -10.38951 -9.63253 -9.34333 -9.07648 -8.69295 -8.45797 -8.29554 -5.95391 -3.96547 2.96637 3.07929 3.36412 3.42085 3.47123 4.47117 4.51469 4.60972 4.65568 4.82089 4.99866 5.04751 5.17688 5.27125 5.32419 5.40742 5.46283 5.50602 5.68065 5.70819 5.73632 5.74839 5.75888 5.81269 5.85988 5.90253 5.97648 6.12771 6.29635 6.31953 6.48380 6.77064 6.80211 6.98162 7.20177 7.61146 7.74143 7.87099 8.05667 8.49801 8.53750 9.10574 9.67280 11.16165 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.035524 B = 0.004279 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 788.004212 B = 6542.702162 C = 7007.123423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.131 3.869 3 H 0.099 0.901 4 C -0.130 4.130 5 C -0.120 4.120 6 C -0.131 4.131 7 C 0.144 3.856 8 H 0.065 0.935 9 C -0.138 4.138 10 N -0.614 5.614 11 C 0.515 3.485 12 O -0.530 6.530 13 C -0.139 4.139 14 C -0.094 4.094 15 C 0.020 3.980 16 C -0.517 4.517 17 H 0.056 0.944 18 C 0.056 3.944 19 N -0.898 5.898 20 Si 0.891 3.109 21 H -0.281 1.281 22 H -0.287 1.287 23 H -0.274 1.274 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.068 0.932 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.079 0.921 34 H 0.038 0.962 35 H 0.064 0.936 36 H 0.085 0.915 37 H 0.085 0.915 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.785 -16.064 -11.052 21.816 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.027 3.973 3 H 0.117 0.883 4 C -0.168 4.168 5 C -0.158 4.158 6 C -0.170 4.170 7 C 0.040 3.960 8 H 0.083 0.917 9 C -0.195 4.195 10 N -0.349 5.349 11 C 0.306 3.694 12 O -0.407 6.407 13 C -0.179 4.179 14 C -0.132 4.132 15 C -0.017 4.017 16 C -0.555 4.555 17 H 0.074 0.926 18 C -0.145 4.145 19 N -0.538 5.538 20 Si 0.719 3.281 21 H -0.207 1.207 22 H -0.213 1.213 23 H -0.198 1.198 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.098 0.902 34 H 0.057 0.943 35 H 0.083 0.917 36 H 0.103 0.897 37 H 0.104 0.896 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -9.582 -16.184 -10.535 21.557 hybrid contribution 0.455 0.475 0.551 0.858 sum -9.127 -15.709 -9.984 20.730 Atomic orbital electron populations 1.22165 0.95095 1.02387 1.02519 1.21395 0.94280 0.97061 0.84533 0.88328 1.22006 1.01682 0.95775 0.97381 1.21545 1.00753 0.95618 0.97860 1.22013 1.01202 0.99268 0.94485 1.21170 0.99058 0.80101 0.95622 0.91726 1.22198 1.01794 0.97941 0.97550 1.48356 1.56974 1.08449 1.21125 1.21179 0.76268 0.89546 0.82447 1.90702 1.54012 1.68850 1.27123 1.21897 1.02140 0.91114 1.02771 1.21439 0.98591 0.99035 0.94116 1.19128 0.96408 0.89057 0.97064 1.21277 1.35503 0.96160 1.02574 0.92607 1.25016 0.96281 0.96997 0.96198 1.69965 1.47056 1.06304 1.30456 0.86599 0.80146 0.77894 0.83423 1.20692 1.21274 1.19840 0.92086 0.91416 0.92179 0.91283 0.90790 0.91888 0.91652 0.91498 0.91157 0.90181 0.94341 0.91654 0.89681 0.89628 0.92788 0.92764 0.96661 0.96685 0.93106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.44 9.03 37.16 0.34 -1.11 16 2 C 0.13 1.35 3.14 -67.38 -0.21 1.14 16 3 H 0.10 1.05 5.93 -51.93 -0.31 0.74 16 4 C -0.13 -1.13 5.58 -26.38 -0.15 -1.28 16 5 C -0.12 -0.96 5.68 -26.69 -0.15 -1.11 16 6 C -0.13 -1.24 5.37 -26.62 -0.14 -1.38 16 7 C 0.14 1.67 3.07 -67.60 -0.21 1.46 16 8 H 0.06 0.70 7.48 -51.93 -0.39 0.31 16 9 C -0.14 -1.84 7.61 37.16 0.28 -1.56 16 10 N -0.61 -7.99 2.68 -157.48 -0.42 -8.41 16 11 C 0.52 8.60 7.50 -10.99 -0.08 8.52 16 12 O -0.53 -10.40 11.55 5.56 0.06 -10.34 16 13 C -0.14 -2.40 4.06 -27.88 -0.11 -2.51 16 14 C -0.09 -2.07 4.44 -26.73 -0.12 -2.19 16 15 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 16 C -0.52 -15.12 9.11 -34.44 -0.31 -15.43 16 17 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 18 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 19 N -0.90 -27.29 13.29 55.43 0.74 -26.55 16 20 Si 0.89 22.19 29.54 -169.99 -5.02 17.17 16 21 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 24 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 25 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.50 5.71 -51.93 -0.30 0.20 16 27 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.48 6.49 -51.93 -0.34 0.15 16 31 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.56 8.14 -51.92 -0.42 0.14 16 33 H 0.08 1.25 6.54 -51.93 -0.34 0.91 16 34 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 1.01 6.96 -51.93 -0.36 0.65 16 36 H 0.08 1.35 7.69 -51.93 -0.40 0.95 16 37 H 0.09 1.37 7.94 -51.93 -0.41 0.96 16 38 H 0.05 1.24 8.10 -51.92 -0.42 0.82 16 39 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 321.80 15.07 4.85 4.85 Total: -1.00 -32.04 321.80 -8.35 -40.39 By element: Atomic # 1 Polarization: 3.85 SS G_CDS: -7.45 Total: -3.60 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -1.11 Total: -13.51 kcal Atomic # 7 Polarization: -35.28 SS G_CDS: 0.32 Total: -34.96 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.06 Total: -10.34 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.04 -8.35 -40.39 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593958397.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.325 kcal (2) G-P(sol) polarization free energy of solvation -32.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.366 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.392 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds