Wall clock time and date at job start Mon Mar 30 2020 07:07:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46797 * 2 1 4 4 C 1.53001 * 109.47274 * 119.99920 * 2 1 3 5 5 C 1.53006 * 109.47002 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.46993 * 299.99742 * 5 4 2 7 7 H 1.09004 * 109.47569 * 300.00032 * 6 5 4 8 8 N 1.46505 * 109.47218 * 179.97438 * 6 5 4 9 9 C 1.34774 * 119.99781 * 84.99840 * 8 6 5 10 10 O 1.21280 * 120.00084 * 0.02562 * 9 8 6 11 11 C 1.50697 * 120.00180 * 179.97438 * 9 8 6 12 12 C 1.52997 * 109.47454 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47415 * 180.02562 * 12 11 9 14 14 C 1.50695 * 109.47057 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00538 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99661 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00186 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00030 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47297 * 89.99863 * 18 16 14 20 20 H 1.48503 * 109.47261 * 330.00044 * 18 16 14 21 21 H 1.48500 * 109.47454 * 210.00037 * 18 16 14 22 22 C 1.53001 * 109.47036 * 60.00279 * 6 5 4 23 23 C 1.52998 * 109.47121 * 240.00063 * 2 1 3 24 24 H 1.08997 * 109.46993 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46769 * 299.99584 * 1 2 3 26 26 H 1.08988 * 109.47494 * 59.99872 * 1 2 3 27 27 H 1.08999 * 109.47149 * 300.00197 * 4 2 1 28 28 H 1.08997 * 109.47319 * 59.99944 * 4 2 1 29 29 H 1.09002 * 109.46933 * 179.97438 * 5 4 2 30 30 H 1.09004 * 109.46989 * 60.00129 * 5 4 2 31 31 H 0.96995 * 119.99711 * 265.00561 * 8 6 5 32 32 H 1.09002 * 109.46738 * 60.00143 * 11 9 8 33 33 H 1.08998 * 109.47308 * 300.00376 * 11 9 8 34 34 H 1.09002 * 109.47302 * 60.00157 * 12 11 9 35 35 H 1.08998 * 109.46899 * 300.00294 * 12 11 9 36 36 H 1.09002 * 109.46997 * 59.99676 * 13 12 11 37 37 H 1.09000 * 109.46625 * 300.00101 * 13 12 11 38 38 H 0.97001 * 119.99697 * 359.97438 * 17 16 14 39 39 H 1.08997 * 109.47319 * 59.99840 * 22 6 5 40 40 H 1.08999 * 109.47149 * 179.97438 * 22 6 5 41 41 H 1.09002 * 109.47398 * 59.99730 * 23 2 1 42 42 H 1.09004 * 109.47233 * 299.99670 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5701 -0.7206 1.2495 6 6 4.0805 -1.4415 0.0003 7 1 3.7176 -2.4694 0.0001 8 7 5.5456 -1.4405 0.0002 9 6 6.2202 -2.3960 0.6697 10 8 5.6144 -3.2571 1.2719 11 6 7.7271 -2.3953 0.6692 12 6 8.2380 -3.5768 1.4962 13 6 9.7680 -3.5757 1.4962 14 6 10.2712 -4.7398 2.3103 15 1 9.5699 -5.4129 2.7810 16 6 11.6269 -4.9456 2.4541 17 7 12.4810 -4.1263 1.8805 18 14 12.2507 -6.3881 3.4638 19 1 12.4158 -7.5733 2.5844 20 1 11.2732 -6.7006 4.5371 21 1 13.5590 -6.0374 4.0726 22 6 3.5705 -0.7203 -1.2489 23 6 2.0400 -0.7212 -1.2492 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8898 27 1 1.6767 -0.2074 2.1392 28 1 1.6767 -1.7489 1.2493 29 1 3.9334 -1.2341 2.1397 30 1 3.9330 0.3072 1.2497 31 1 6.0300 -0.7520 -0.4816 32 1 8.0901 -1.4636 1.1031 33 1 8.0902 -2.4850 -0.3546 34 1 7.8750 -4.5083 1.0619 35 1 7.8750 -3.4876 2.5201 36 1 10.1307 -2.6442 1.9307 37 1 10.1313 -3.6647 0.4724 38 1 12.1570 -3.3774 1.3559 39 1 3.9334 0.3074 -1.2488 40 1 3.9345 -1.2336 -2.1389 41 1 1.6766 -0.2074 -2.1393 42 1 1.6767 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593974647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:11 Heat of formation + Delta-G solvation = -94.637458 kcal Electronic energy + Delta-G solvation = -18507.496679 eV Core-core repulsion = 15678.059925 eV Total energy + Delta-G solvation = -2829.436754 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.02965 -38.41672 -34.79544 -34.33176 -32.17715 -31.17682 -31.04059 -27.72695 -25.90652 -23.47496 -23.02018 -21.59887 -20.65596 -20.27935 -19.63715 -17.10922 -16.38851 -16.21180 -15.45648 -14.91552 -14.57716 -14.51845 -13.89475 -13.68292 -13.58581 -13.19929 -13.00342 -12.80841 -12.51215 -12.47779 -11.89701 -11.46260 -11.45725 -11.37999 -11.17979 -11.02146 -10.84431 -10.68439 -10.60353 -10.37709 -10.07535 -9.79655 -9.78414 -9.43994 -8.97461 -8.47211 -8.26517 -6.30872 -3.98678 2.91976 3.27662 3.48308 3.52243 3.68303 4.37878 4.39076 4.56520 4.60362 4.77462 4.90560 5.08995 5.10381 5.21868 5.24967 5.25388 5.36728 5.46374 5.47875 5.51470 5.62895 5.65016 5.65671 5.74590 5.84545 5.86787 5.94450 5.97245 6.11827 6.17769 6.23299 6.56142 6.62557 6.80051 7.02844 7.48875 7.59854 7.63164 8.30087 8.46603 8.54612 8.95490 9.73017 11.10077 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.061107 B = 0.003053 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.105769 B = 9168.982798 C = 9393.006946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.094 4.094 3 H 0.069 0.931 4 C -0.111 4.111 5 C -0.130 4.130 6 C 0.144 3.856 7 H 0.085 0.915 8 N -0.737 5.737 9 C 0.513 3.487 10 O -0.537 6.537 11 C -0.140 4.140 12 C -0.087 4.087 13 C 0.007 3.993 14 C -0.599 4.599 15 H 0.050 0.950 16 C 0.012 3.988 17 N -0.917 5.917 18 Si 1.071 2.929 19 H -0.288 1.288 20 H -0.288 1.288 21 H -0.285 1.285 22 C -0.126 4.126 23 C -0.110 4.110 24 H 0.055 0.945 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.069 0.931 30 H 0.062 0.938 31 H 0.398 0.602 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.006 0.994 37 H 0.006 0.994 38 H 0.268 0.732 39 H 0.066 0.934 40 H 0.068 0.932 41 H 0.065 0.935 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.876 11.523 -7.084 25.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.113 4.113 3 H 0.088 0.912 4 C -0.150 4.150 5 C -0.169 4.169 6 C 0.040 3.960 7 H 0.103 0.897 8 N -0.389 5.389 9 C 0.301 3.699 10 O -0.413 6.413 11 C -0.180 4.180 12 C -0.125 4.125 13 C -0.030 4.030 14 C -0.637 4.637 15 H 0.068 0.932 16 C -0.191 4.191 17 N -0.553 5.553 18 Si 0.900 3.100 19 H -0.215 1.215 20 H -0.215 1.215 21 H -0.210 1.210 22 C -0.164 4.164 23 C -0.148 4.148 24 H 0.074 0.926 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.231 0.769 32 H 0.105 0.895 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.025 0.975 37 H 0.024 0.976 38 H 0.078 0.922 39 H 0.085 0.915 40 H 0.087 0.913 41 H 0.084 0.916 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.934 10.119 -6.104 24.039 hybrid contribution -1.165 1.206 -0.821 1.867 sum -22.099 11.325 -6.925 25.780 Atomic orbital electron populations 1.21828 0.95256 1.01876 1.01549 1.21182 0.95428 0.99653 0.95011 0.91217 1.21558 0.95027 1.00933 0.97433 1.21927 0.95521 1.00693 0.98712 1.20916 0.80030 1.00610 0.94468 0.89670 1.46215 1.06675 1.31340 1.54713 1.21179 0.90966 0.80270 0.77488 1.90672 1.70676 1.37172 1.42797 1.21856 0.89919 1.02973 1.03289 1.21296 0.98089 0.94765 0.98395 1.19263 0.90157 0.97138 0.96452 1.22112 0.94259 1.12875 1.34464 0.93194 1.25867 0.93479 1.01901 0.97814 1.70763 1.37170 1.15658 1.31753 0.83512 0.75636 0.74932 0.75924 1.21471 1.21454 1.21034 1.21812 0.96287 1.00858 0.97449 1.21548 0.94439 1.01116 0.97714 0.92634 0.92721 0.92783 0.91811 0.91709 0.91274 0.91960 0.76864 0.89511 0.89510 0.92564 0.92577 0.97542 0.97552 0.92194 0.91479 0.91311 0.91618 0.91633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.19 37.16 0.34 -0.59 16 2 C -0.09 -0.68 2.72 -90.62 -0.25 -0.92 16 3 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 4 C -0.11 -0.97 5.20 -26.73 -0.14 -1.11 16 5 C -0.13 -1.36 5.49 -26.73 -0.15 -1.51 16 6 C 0.14 1.57 2.45 -67.93 -0.17 1.41 16 7 H 0.09 1.13 7.58 -51.93 -0.39 0.73 16 8 N -0.74 -8.81 5.08 -53.81 -0.27 -9.08 16 9 C 0.51 8.40 7.79 -10.99 -0.09 8.32 16 10 O -0.54 -10.97 15.65 5.56 0.09 -10.88 16 11 C -0.14 -2.37 5.70 -27.89 -0.16 -2.53 16 12 C -0.09 -1.95 4.44 -26.73 -0.12 -2.07 16 13 C 0.01 0.18 4.28 -27.89 -0.12 0.06 16 14 C -0.60 -17.85 9.11 -34.44 -0.31 -18.17 16 15 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.01 0.37 5.46 -17.82 -0.10 0.27 16 17 N -0.92 -28.71 13.65 55.43 0.76 -27.95 16 18 Si 1.07 26.22 29.90 -169.99 -5.08 21.14 16 19 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 20 H -0.29 -6.76 7.11 56.52 0.40 -6.35 16 21 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 22 C -0.13 -1.00 5.39 -26.70 -0.14 -1.15 16 23 C -0.11 -0.79 5.21 -26.71 -0.14 -0.93 16 24 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 25 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.30 8.14 -51.94 -0.42 -0.12 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.40 3.62 8.60 -40.82 -0.35 3.27 16 32 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 33 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 34 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 35 H 0.06 1.31 8.10 -51.93 -0.42 0.89 16 36 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 37 H 0.01 0.17 8.01 -51.93 -0.42 -0.25 16 38 H 0.27 8.29 7.22 -40.82 -0.29 7.99 16 39 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 335.40 15.07 5.05 5.05 Total: -1.00 -33.85 335.40 -8.83 -42.68 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -7.83 Total: -2.06 kcal Atomic # 6 Polarization: -17.37 SS G_CDS: -1.53 Total: -18.91 kcal Atomic # 7 Polarization: -37.51 SS G_CDS: 0.48 Total: -37.03 kcal Atomic # 8 Polarization: -10.97 SS G_CDS: 0.09 Total: -10.88 kcal Atomic # 14 Polarization: 26.22 SS G_CDS: -5.08 Total: 21.14 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.85 -8.83 -42.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593974647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.958 kcal (2) G-P(sol) polarization free energy of solvation -33.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds