Wall clock time and date at job start Mon Mar 30 2020 07:07:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09004 * 109.46797 * 2 1 4 4 C 1.53001 * 109.47274 * 119.99920 * 2 1 3 5 5 C 1.53006 * 109.47002 * 180.02562 * 4 2 1 6 6 C 1.52994 * 109.46993 * 299.99742 * 5 4 2 7 7 H 1.09004 * 109.47569 * 300.00032 * 6 5 4 8 8 N 1.46505 * 109.47218 * 179.97438 * 6 5 4 9 9 C 1.34774 * 119.99781 * 84.99840 * 8 6 5 10 10 O 1.21280 * 120.00084 * 0.02562 * 9 8 6 11 11 C 1.50697 * 120.00180 * 179.97438 * 9 8 6 12 12 C 1.52997 * 109.47454 * 180.02562 * 11 9 8 13 13 C 1.52999 * 109.47415 * 180.02562 * 12 11 9 14 14 C 1.50695 * 109.47057 * 180.02562 * 13 12 11 15 15 H 1.07999 * 120.00538 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99661 * 179.97438 * 14 13 12 17 17 N 1.31520 * 120.00186 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00030 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.47297 * 89.99863 * 18 16 14 20 20 H 1.48503 * 109.47261 * 330.00044 * 18 16 14 21 21 H 1.48500 * 109.47454 * 210.00037 * 18 16 14 22 22 C 1.53001 * 109.47036 * 60.00279 * 6 5 4 23 23 C 1.52998 * 109.47121 * 240.00063 * 2 1 3 24 24 H 1.08997 * 109.46993 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.46769 * 299.99584 * 1 2 3 26 26 H 1.08988 * 109.47494 * 59.99872 * 1 2 3 27 27 H 1.08999 * 109.47149 * 300.00197 * 4 2 1 28 28 H 1.08997 * 109.47319 * 59.99944 * 4 2 1 29 29 H 1.09002 * 109.46933 * 179.97438 * 5 4 2 30 30 H 1.09004 * 109.46989 * 60.00129 * 5 4 2 31 31 H 0.96995 * 119.99711 * 265.00561 * 8 6 5 32 32 H 1.09002 * 109.46738 * 60.00143 * 11 9 8 33 33 H 1.08998 * 109.47308 * 300.00376 * 11 9 8 34 34 H 1.09002 * 109.47302 * 60.00157 * 12 11 9 35 35 H 1.08998 * 109.46899 * 300.00294 * 12 11 9 36 36 H 1.09002 * 109.46997 * 59.99676 * 13 12 11 37 37 H 1.09000 * 109.46625 * 300.00101 * 13 12 11 38 38 H 0.97001 * 119.99697 * 359.97438 * 17 16 14 39 39 H 1.08997 * 109.47319 * 59.99840 * 22 6 5 40 40 H 1.08999 * 109.47149 * 179.97438 * 22 6 5 41 41 H 1.09002 * 109.47398 * 59.99730 * 23 2 1 42 42 H 1.09004 * 109.47233 * 299.99670 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5701 -0.7206 1.2495 6 6 4.0805 -1.4415 0.0003 7 1 3.7176 -2.4694 0.0001 8 7 5.5456 -1.4405 0.0002 9 6 6.2202 -2.3960 0.6697 10 8 5.6144 -3.2571 1.2719 11 6 7.7271 -2.3953 0.6692 12 6 8.2380 -3.5768 1.4962 13 6 9.7680 -3.5757 1.4962 14 6 10.2712 -4.7398 2.3103 15 1 9.5699 -5.4129 2.7810 16 6 11.6269 -4.9456 2.4541 17 7 12.4810 -4.1263 1.8805 18 14 12.2507 -6.3881 3.4638 19 1 12.4158 -7.5733 2.5844 20 1 11.2732 -6.7006 4.5371 21 1 13.5590 -6.0374 4.0726 22 6 3.5705 -0.7203 -1.2489 23 6 2.0400 -0.7212 -1.2492 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8898 27 1 1.6767 -0.2074 2.1392 28 1 1.6767 -1.7489 1.2493 29 1 3.9334 -1.2341 2.1397 30 1 3.9330 0.3072 1.2497 31 1 6.0300 -0.7520 -0.4816 32 1 8.0901 -1.4636 1.1031 33 1 8.0902 -2.4850 -0.3546 34 1 7.8750 -4.5083 1.0619 35 1 7.8750 -3.4876 2.5201 36 1 10.1307 -2.6442 1.9307 37 1 10.1313 -3.6647 0.4724 38 1 12.1570 -3.3774 1.3559 39 1 3.9334 0.3074 -1.2488 40 1 3.9345 -1.2336 -2.1389 41 1 1.6766 -0.2074 -2.1393 42 1 1.6767 -1.7489 -1.2492 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593974647.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:10 Heat of formation + Delta-G solvation = -115.445822 kcal Electronic energy + Delta-G solvation = -18508.398998 eV Core-core repulsion = 15678.059925 eV Total energy + Delta-G solvation = -2830.339073 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.14548 -39.37536 -36.51054 -35.65094 -34.09675 -32.14887 -31.75477 -29.42599 -26.89205 -25.39769 -23.75349 -22.91106 -21.94413 -21.38754 -20.61804 -19.04552 -17.81493 -17.36501 -16.82681 -15.87740 -15.66471 -15.34013 -15.22383 -15.15414 -15.07096 -14.81260 -14.19577 -13.74427 -13.51393 -13.24710 -13.18696 -13.08749 -12.64211 -12.55659 -12.48650 -12.09591 -11.99129 -11.92195 -11.78592 -11.69329 -11.65397 -11.28833 -11.11767 -10.91821 -10.58552 -10.54672 -10.05563 -8.70664 -6.40134 1.50875 1.60128 1.60999 1.79017 2.17693 2.55436 3.13918 3.65363 3.73408 3.80981 3.95009 4.10837 4.11439 4.13457 4.21196 4.39939 4.45204 4.53580 4.58302 4.68165 4.79442 4.80774 4.82650 4.90737 4.95704 4.98370 5.01086 5.10397 5.14333 5.18899 5.25122 5.36983 5.41231 5.43119 5.50440 5.54398 5.58640 6.01303 6.17775 6.55036 6.59381 7.26135 7.39929 8.71203 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.061107 B = 0.003053 C = 0.002980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 458.105769 B = 9168.982798 C = 9393.006946 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.090 4.090 3 H 0.079 0.921 4 C -0.109 4.109 5 C -0.126 4.126 6 C 0.142 3.858 7 H 0.057 0.943 8 N -0.715 5.715 9 C 0.515 3.485 10 O -0.586 6.586 11 C -0.131 4.131 12 C -0.076 4.076 13 C 0.010 3.990 14 C -0.625 4.625 15 H 0.041 0.959 16 C -0.037 4.037 17 N -0.936 5.936 18 Si 1.119 2.881 19 H -0.271 1.271 20 H -0.275 1.275 21 H -0.277 1.277 22 C -0.117 4.117 23 C -0.109 4.109 24 H 0.050 0.950 25 H 0.056 0.944 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.052 0.948 29 H 0.035 0.965 30 H 0.076 0.924 31 H 0.416 0.584 32 H 0.108 0.892 33 H 0.109 0.891 34 H 0.039 0.961 35 H 0.038 0.962 36 H -0.002 1.002 37 H -0.001 1.001 38 H 0.258 0.742 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.084 0.916 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.680 12.752 -8.022 27.228 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.108 4.108 3 H 0.097 0.903 4 C -0.148 4.148 5 C -0.165 4.165 6 C 0.037 3.963 7 H 0.076 0.924 8 N -0.367 5.367 9 C 0.303 3.697 10 O -0.466 6.466 11 C -0.171 4.171 12 C -0.114 4.114 13 C -0.027 4.027 14 C -0.663 4.663 15 H 0.059 0.941 16 C -0.235 4.235 17 N -0.573 5.573 18 Si 0.940 3.060 19 H -0.196 1.196 20 H -0.200 1.200 21 H -0.203 1.203 22 C -0.155 4.155 23 C -0.147 4.147 24 H 0.069 0.931 25 H 0.075 0.925 26 H 0.083 0.917 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.054 0.946 30 H 0.095 0.905 31 H 0.253 0.747 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.058 0.942 35 H 0.057 0.943 36 H 0.017 0.983 37 H 0.017 0.983 38 H 0.068 0.932 39 H 0.104 0.896 40 H 0.091 0.909 41 H 0.103 0.897 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -21.761 11.406 -7.088 25.571 hybrid contribution -0.950 0.863 -0.544 1.394 sum -22.711 12.269 -7.632 26.917 Atomic orbital electron populations 1.21813 0.94486 1.01829 1.02254 1.21159 0.96047 0.99741 0.93889 0.90257 1.21548 0.93621 1.00684 0.98897 1.21874 0.96870 1.00782 0.96940 1.21042 0.78964 0.99749 0.96513 0.92449 1.46020 1.07376 1.30286 1.53054 1.21016 0.90707 0.80538 0.77488 1.90662 1.71364 1.39355 1.45192 1.21687 0.90517 1.01293 1.03591 1.21029 0.95323 0.96642 0.98419 1.19190 0.92740 0.95580 0.95213 1.22549 0.94724 1.13945 1.35088 0.94075 1.27415 0.94013 1.03871 0.98151 1.70890 1.37495 1.16152 1.32755 0.82919 0.75659 0.72302 0.75162 1.19612 1.19975 1.20250 1.21777 0.96835 1.01372 0.95544 1.21565 0.93713 1.00955 0.98486 0.93097 0.92470 0.91654 0.91254 0.92927 0.94625 0.90533 0.74711 0.87369 0.87290 0.94246 0.94342 0.98325 0.98295 0.93237 0.89587 0.90882 0.89726 0.92491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 9.19 71.98 0.66 -0.87 16 2 C -0.09 -1.09 2.72 -10.79 -0.03 -1.12 16 3 H 0.08 0.85 8.14 -2.39 -0.02 0.84 16 4 C -0.11 -1.81 5.20 30.60 0.16 -1.65 16 5 C -0.13 -2.57 5.49 30.59 0.17 -2.41 16 6 C 0.14 2.96 2.45 44.99 0.11 3.07 16 7 H 0.06 1.55 7.58 -2.39 -0.02 1.53 16 8 N -0.72 -16.06 5.08 -442.53 -2.25 -18.31 16 9 C 0.51 16.70 7.79 87.66 0.68 17.38 16 10 O -0.59 -24.62 15.65 -3.03 -0.05 -24.67 16 11 C -0.13 -4.31 5.70 29.85 0.17 -4.14 16 12 C -0.08 -3.45 4.44 30.59 0.14 -3.31 16 13 C 0.01 0.53 4.28 29.85 0.13 0.65 16 14 C -0.63 -37.86 9.11 25.60 0.23 -37.63 16 15 H 0.04 2.50 7.74 -2.91 -0.02 2.48 16 16 C -0.04 -2.22 5.46 84.65 0.46 -1.76 16 17 N -0.94 -58.87 13.65 21.45 0.29 -58.58 16 18 Si 1.12 52.33 29.90 68.60 2.05 54.38 16 19 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 22 C -0.12 -1.57 5.39 30.61 0.17 -1.40 16 23 C -0.11 -1.30 5.21 30.61 0.16 -1.14 16 24 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.56 16 26 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 28 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.03 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.42 6.40 8.60 -92.71 -0.80 5.60 16 32 H 0.11 3.11 8.14 -2.39 -0.02 3.09 16 33 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 34 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 35 H 0.04 1.85 8.10 -2.39 -0.02 1.83 16 36 H 0.00 -0.08 8.01 -2.39 -0.02 -0.10 16 37 H 0.00 -0.07 8.01 -2.39 -0.02 -0.09 16 38 H 0.26 16.22 7.22 -92.71 -0.67 15.55 16 39 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 Total: -1.00 -74.60 335.40 3.52 -71.08 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 0.26 Total: 10.44 kcal Atomic # 6 Polarization: -37.55 SS G_CDS: 3.21 Total: -34.34 kcal Atomic # 7 Polarization: -74.94 SS G_CDS: -1.95 Total: -76.89 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: -0.05 Total: -24.67 kcal Atomic # 14 Polarization: 52.33 SS G_CDS: 2.05 Total: 54.38 kcal Total: -74.60 3.52 -71.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593974647.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.366 kcal (2) G-P(sol) polarization free energy of solvation -74.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds