Wall clock time and date at job start Mon Mar 30 2020 07:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.49612 * 2 1 4 4 C 1.53034 * 109.50200 * 239.93108 * 2 1 3 5 5 C 1.53039 * 109.53956 * 178.68282 * 4 2 1 6 6 C 1.53191 * 109.31466 * 61.36674 * 5 4 2 7 7 H 1.08997 * 109.70283 * 65.21640 * 6 5 4 8 8 C 1.52996 * 109.58829 * 185.57750 * 6 5 4 9 9 N 1.46927 * 108.77360 * 305.36525 * 6 5 4 10 10 C 1.34777 * 120.63224 * 233.58429 * 9 6 5 11 11 O 1.21282 * 119.99696 * 354.21408 * 10 9 6 12 12 C 1.50698 * 120.00255 * 174.20629 * 10 9 6 13 13 C 1.52995 * 109.47177 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47415 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47379 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00137 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99704 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00448 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99809 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47358 * 89.99790 * 19 17 15 21 21 H 1.48499 * 109.46974 * 209.99989 * 19 17 15 22 22 H 1.48503 * 109.46802 * 329.99559 * 19 17 15 23 23 C 1.46921 * 118.73887 * 53.85836 * 9 6 5 24 24 H 1.09004 * 109.46496 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47155 * 300.06542 * 1 2 3 26 26 H 1.08998 * 109.47130 * 60.07433 * 1 2 3 27 27 H 1.09003 * 109.45872 * 58.65942 * 4 2 1 28 28 H 1.09005 * 109.46045 * 298.70347 * 4 2 1 29 29 H 1.08994 * 109.49868 * 301.41151 * 5 4 2 30 30 H 1.09001 * 109.49541 * 181.31653 * 5 4 2 31 31 H 1.09005 * 109.47015 * 185.08438 * 8 6 5 32 32 H 1.08995 * 109.47038 * 305.08391 * 8 6 5 33 33 H 1.09000 * 109.47325 * 65.08534 * 8 6 5 34 34 H 1.09000 * 109.46576 * 60.00291 * 12 10 9 35 35 H 1.09000 * 109.47446 * 300.00676 * 12 10 9 36 36 H 1.09003 * 109.46900 * 60.00168 * 13 12 10 37 37 H 1.09000 * 109.47454 * 300.00634 * 13 12 10 38 38 H 1.09000 * 109.47331 * 300.00714 * 14 13 12 39 39 H 1.09003 * 109.46945 * 60.00200 * 14 13 12 40 40 H 0.97003 * 119.99872 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.58831 * 65.92815 * 23 9 6 42 42 H 1.09007 * 109.58995 * 186.35464 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7228 -1.2484 5 6 3.5709 -0.6946 -1.2660 6 6 4.1054 -1.4266 -0.0309 7 1 3.8397 -2.4822 -0.0858 8 6 5.6273 -1.2832 0.0316 9 7 3.5046 -0.8293 1.1695 10 6 4.2811 -0.3868 2.1784 11 8 5.4790 -0.5738 2.1485 12 6 3.6608 0.3406 3.3434 13 6 4.7533 0.7322 4.3403 14 6 4.1237 1.4712 5.5228 15 6 5.1997 1.8564 6.5051 16 1 6.2298 1.6001 6.3057 17 6 4.8692 2.5359 7.6583 18 7 3.6149 2.8475 7.9014 19 14 6.2031 3.0140 8.8755 20 1 6.7297 4.3587 8.5299 21 1 5.6345 3.0425 10.2470 22 1 7.3055 2.0206 8.8172 23 6 2.0412 -0.7291 1.2519 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5148 0.8893 26 1 -0.3633 0.5127 -0.8906 27 1 1.6582 -0.2240 -2.1389 28 1 1.6968 -1.7570 -1.2356 29 1 3.9160 0.3392 -1.2539 30 1 3.9335 -1.1891 -2.1672 31 1 6.0147 -1.8786 0.8585 32 1 6.0640 -1.6331 -0.9038 33 1 5.8877 -0.2359 0.1848 34 1 2.9369 -0.3101 3.8341 35 1 3.1576 1.2386 2.9849 36 1 5.4768 1.3830 3.8493 37 1 5.2569 -0.1656 4.6988 38 1 3.6204 2.3690 5.1639 39 1 3.3999 0.8208 6.0140 40 1 3.3824 3.3259 8.7126 41 1 1.6085 -1.7285 1.2982 42 1 1.7629 -0.1666 2.1432 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593986637.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:29 Heat of formation + Delta-G solvation = -59.275942 kcal Electronic energy + Delta-G solvation = -19255.433839 eV Core-core repulsion = 16427.530475 eV Total energy + Delta-G solvation = -2827.903364 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.44131 -37.67588 -34.52835 -33.72181 -33.07070 -31.75732 -29.06996 -27.69405 -25.95462 -24.27149 -23.73868 -21.79575 -20.55976 -19.95146 -18.72972 -16.60653 -16.21921 -15.98623 -15.39555 -14.92650 -14.42038 -14.40601 -14.13955 -13.67261 -13.49845 -12.94408 -12.82749 -12.39831 -12.22137 -12.07685 -11.91341 -11.73799 -11.63307 -11.28227 -11.12442 -10.97984 -10.83417 -10.76888 -10.67717 -10.50754 -10.43233 -9.63540 -9.34751 -9.08019 -8.70606 -8.47086 -8.29725 -5.95522 -3.96752 2.95016 3.09523 3.36330 3.42021 3.47029 4.45124 4.51055 4.56819 4.61271 4.76916 4.99069 5.12250 5.21535 5.26551 5.33690 5.40586 5.43788 5.52946 5.57324 5.62245 5.71503 5.74392 5.75707 5.82669 5.86354 5.89681 5.96212 6.12698 6.27904 6.29420 6.46246 6.76520 6.77706 6.97638 7.19791 7.58377 7.73831 7.86782 8.05441 8.49485 8.52037 9.10366 9.67127 11.16005 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.031359 B = 0.004251 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.682388 B = 6585.445075 C = 7319.102841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.109 4.109 3 H 0.076 0.924 4 C -0.114 4.114 5 C -0.132 4.132 6 C 0.143 3.857 7 H 0.065 0.935 8 C -0.138 4.138 9 N -0.619 5.619 10 C 0.515 3.485 11 O -0.530 6.530 12 C -0.139 4.139 13 C -0.094 4.094 14 C 0.020 3.980 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.112 3.888 24 H 0.055 0.945 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.067 0.933 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.085 0.915 35 H 0.086 0.914 36 H 0.053 0.947 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.259 0.741 41 H 0.066 0.934 42 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.658 -8.126 -19.271 21.948 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.128 4.128 3 H 0.095 0.905 4 C -0.151 4.151 5 C -0.170 4.170 6 C 0.040 3.960 7 H 0.083 0.917 8 C -0.195 4.195 9 N -0.354 5.354 10 C 0.305 3.695 11 O -0.406 6.406 12 C -0.179 4.179 13 C -0.132 4.132 14 C -0.017 4.017 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.012 4.012 24 H 0.075 0.925 25 H 0.079 0.921 26 H 0.076 0.924 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.085 0.915 30 H 0.090 0.910 31 H 0.098 0.902 32 H 0.057 0.943 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.072 0.928 37 H 0.073 0.927 38 H 0.033 0.967 39 H 0.033 0.967 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -6.101 -8.146 -19.139 21.677 hybrid contribution 0.425 0.346 0.642 0.844 sum -5.676 -7.800 -18.497 20.861 Atomic orbital electron populations 1.21776 0.94401 1.01997 1.02207 1.21608 0.95889 1.00308 0.95036 0.90540 1.21582 0.95322 1.00651 0.97562 1.22018 0.95749 1.01555 0.97674 1.21202 0.94624 0.96036 0.84118 0.91710 1.22198 0.92632 1.04043 1.00629 1.48278 1.06588 1.62307 1.18273 1.21199 0.87045 0.78003 0.83242 1.90703 1.15269 1.56521 1.78153 1.21897 1.01294 1.00091 0.94628 1.21440 0.95756 1.00480 0.95524 1.19130 0.96054 0.94971 0.91506 1.21276 0.94092 1.35740 1.04413 0.92601 1.25014 0.95346 0.96037 0.98092 1.69965 1.16667 1.40771 1.26385 0.86599 0.82084 0.78919 0.80459 1.20692 1.21272 1.19836 1.21900 0.79695 1.00697 0.98873 0.92546 0.92091 0.92444 0.91798 0.91892 0.91472 0.91040 0.90166 0.94282 0.91648 0.89646 0.89593 0.92784 0.92747 0.96679 0.96654 0.93102 0.91547 0.89023 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.05 9.20 37.16 0.34 -0.71 16 2 C -0.11 -0.95 2.89 -90.28 -0.26 -1.21 16 3 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 4 C -0.11 -0.92 5.16 -26.69 -0.14 -1.05 16 5 C -0.13 -1.23 5.37 -26.61 -0.14 -1.38 16 6 C 0.14 1.67 3.49 -67.60 -0.24 1.43 16 7 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 8 C -0.14 -1.84 7.61 37.16 0.28 -1.56 16 9 N -0.62 -8.11 2.97 -164.96 -0.49 -8.60 16 10 C 0.52 8.60 7.50 -10.99 -0.08 8.51 16 11 O -0.53 -10.40 11.55 5.56 0.06 -10.34 16 12 C -0.14 -2.39 4.06 -27.89 -0.11 -2.50 16 13 C -0.09 -2.07 4.44 -26.73 -0.12 -2.19 16 14 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -15.11 9.11 -34.44 -0.31 -15.43 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 19 Si 0.89 22.18 29.54 -169.99 -5.02 17.16 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.47 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 23 C 0.11 1.14 5.66 -3.49 -0.02 1.12 16 24 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 31 H 0.08 1.25 6.54 -51.93 -0.34 0.91 16 32 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 1.01 6.96 -51.93 -0.36 0.65 16 34 H 0.09 1.35 7.69 -51.93 -0.40 0.95 16 35 H 0.09 1.37 7.94 -51.93 -0.41 0.96 16 36 H 0.05 1.23 8.10 -51.93 -0.42 0.81 16 37 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 38 H 0.01 0.41 8.14 -51.93 -0.42 -0.02 16 39 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 40 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 41 H 0.07 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.09 0.95 5.93 -51.93 -0.31 0.64 16 LS Contribution 326.74 15.07 4.92 4.92 Total: -1.00 -32.04 326.74 -8.52 -40.57 By element: Atomic # 1 Polarization: 3.55 SS G_CDS: -7.70 Total: -4.15 kcal Atomic # 6 Polarization: -11.99 SS G_CDS: -1.04 Total: -13.02 kcal Atomic # 7 Polarization: -35.39 SS G_CDS: 0.25 Total: -35.14 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.06 Total: -10.34 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -32.04 -8.52 -40.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593986637.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.710 kcal (2) G-P(sol) polarization free energy of solvation -32.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.755 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.521 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.276 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds