Wall clock time and date at job start Mon Mar 30 2020 07:12:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09004 * 109.49612 * 2 1 4 4 C 1.53034 * 109.50200 * 239.93108 * 2 1 3 5 5 C 1.53039 * 109.53956 * 178.68282 * 4 2 1 6 6 C 1.53191 * 109.31466 * 61.36674 * 5 4 2 7 7 H 1.08997 * 109.70283 * 65.21640 * 6 5 4 8 8 C 1.52996 * 109.58829 * 185.57750 * 6 5 4 9 9 N 1.46927 * 108.77360 * 305.36525 * 6 5 4 10 10 C 1.34777 * 120.63224 * 233.58429 * 9 6 5 11 11 O 1.21282 * 119.99696 * 354.21408 * 10 9 6 12 12 C 1.50698 * 120.00255 * 174.20629 * 10 9 6 13 13 C 1.52995 * 109.47177 * 180.02562 * 12 10 9 14 14 C 1.53000 * 109.47415 * 179.97438 * 13 12 10 15 15 C 1.50701 * 109.47379 * 179.97438 * 14 13 12 16 16 H 1.07997 * 120.00137 * 0.02562 * 15 14 13 17 17 C 1.37872 * 119.99704 * 180.02562 * 15 14 13 18 18 N 1.31515 * 120.00448 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 119.99809 * 180.02562 * 17 15 14 20 20 H 1.48491 * 109.47358 * 89.99790 * 19 17 15 21 21 H 1.48499 * 109.46974 * 209.99989 * 19 17 15 22 22 H 1.48503 * 109.46802 * 329.99559 * 19 17 15 23 23 C 1.46921 * 118.73887 * 53.85836 * 9 6 5 24 24 H 1.09004 * 109.46496 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47155 * 300.06542 * 1 2 3 26 26 H 1.08998 * 109.47130 * 60.07433 * 1 2 3 27 27 H 1.09003 * 109.45872 * 58.65942 * 4 2 1 28 28 H 1.09005 * 109.46045 * 298.70347 * 4 2 1 29 29 H 1.08994 * 109.49868 * 301.41151 * 5 4 2 30 30 H 1.09001 * 109.49541 * 181.31653 * 5 4 2 31 31 H 1.09005 * 109.47015 * 185.08438 * 8 6 5 32 32 H 1.08995 * 109.47038 * 305.08391 * 8 6 5 33 33 H 1.09000 * 109.47325 * 65.08534 * 8 6 5 34 34 H 1.09000 * 109.46576 * 60.00291 * 12 10 9 35 35 H 1.09000 * 109.47446 * 300.00676 * 12 10 9 36 36 H 1.09003 * 109.46900 * 60.00168 * 13 12 10 37 37 H 1.09000 * 109.47454 * 300.00634 * 13 12 10 38 38 H 1.09000 * 109.47331 * 300.00714 * 14 13 12 39 39 H 1.09003 * 109.46945 * 60.00200 * 14 13 12 40 40 H 0.97003 * 119.99872 * 180.02562 * 18 17 15 41 41 H 1.09001 * 109.58831 * 65.92815 * 23 9 6 42 42 H 1.09007 * 109.58995 * 186.35464 * 23 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0409 -0.7228 -1.2484 5 6 3.5709 -0.6946 -1.2660 6 6 4.1054 -1.4266 -0.0309 7 1 3.8397 -2.4822 -0.0858 8 6 5.6273 -1.2832 0.0316 9 7 3.5046 -0.8293 1.1695 10 6 4.2811 -0.3868 2.1784 11 8 5.4790 -0.5738 2.1485 12 6 3.6608 0.3406 3.3434 13 6 4.7533 0.7322 4.3403 14 6 4.1237 1.4712 5.5228 15 6 5.1997 1.8564 6.5051 16 1 6.2298 1.6001 6.3057 17 6 4.8692 2.5359 7.6583 18 7 3.6149 2.8475 7.9014 19 14 6.2031 3.0140 8.8755 20 1 6.7297 4.3587 8.5299 21 1 5.6345 3.0425 10.2470 22 1 7.3055 2.0206 8.8172 23 6 2.0412 -0.7291 1.2519 24 1 -0.3632 -1.0277 0.0005 25 1 -0.3633 0.5148 0.8893 26 1 -0.3633 0.5127 -0.8906 27 1 1.6582 -0.2240 -2.1389 28 1 1.6968 -1.7570 -1.2356 29 1 3.9160 0.3392 -1.2539 30 1 3.9335 -1.1891 -2.1672 31 1 6.0147 -1.8786 0.8585 32 1 6.0640 -1.6331 -0.9038 33 1 5.8877 -0.2359 0.1848 34 1 2.9369 -0.3101 3.8341 35 1 3.1576 1.2386 2.9849 36 1 5.4768 1.3830 3.8493 37 1 5.2569 -0.1656 4.6988 38 1 3.6204 2.3690 5.1639 39 1 3.3999 0.8208 6.0140 40 1 3.3824 3.3259 8.7126 41 1 1.6085 -1.7285 1.2982 42 1 1.7629 -0.1666 2.1432 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593986637.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:12:28 Heat of formation + Delta-G solvation = -77.287697 kcal Electronic energy + Delta-G solvation = -19256.214887 eV Core-core repulsion = 16427.530475 eV Total energy + Delta-G solvation = -2828.684412 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.56317 -38.73234 -36.26246 -34.83235 -34.39922 -33.46932 -30.09110 -29.33857 -26.90814 -25.89062 -24.81174 -23.07135 -21.72262 -21.25501 -19.91824 -18.48214 -17.58660 -17.23124 -16.66604 -16.47175 -15.79196 -15.42704 -15.18772 -14.85004 -14.48428 -14.20931 -14.18402 -13.73696 -13.72957 -13.28440 -13.07194 -12.96453 -12.74442 -12.59895 -12.47503 -12.44315 -12.34515 -11.92101 -11.80723 -11.58546 -11.55720 -11.42269 -11.27038 -11.19919 -10.54900 -10.03528 -9.51872 -8.20622 -6.30782 1.39209 1.40444 1.52037 1.65356 2.02204 2.41440 3.12264 3.58184 3.76893 3.87049 3.94195 4.04351 4.16248 4.22704 4.27601 4.32590 4.48000 4.63480 4.68452 4.76233 4.79273 4.83932 4.91680 4.93917 4.94816 5.06999 5.07903 5.09737 5.17590 5.23114 5.30303 5.38193 5.40003 5.52664 5.54110 5.73900 5.75148 5.85449 6.26326 6.44305 6.84227 7.25860 7.37958 8.90976 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.031359 B = 0.004251 C = 0.003825 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 892.682388 B = 6585.445075 C = 7319.102841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.106 4.106 3 H 0.061 0.939 4 C -0.110 4.110 5 C -0.126 4.126 6 C 0.138 3.862 7 H 0.083 0.917 8 C -0.131 4.131 9 N -0.611 5.611 10 C 0.512 3.488 11 O -0.569 6.569 12 C -0.130 4.130 13 C -0.079 4.079 14 C 0.027 3.973 15 C -0.548 4.548 16 H 0.051 0.949 17 C 0.004 3.996 18 N -0.929 5.929 19 Si 0.962 3.038 20 H -0.272 1.272 21 H -0.277 1.277 22 H -0.268 1.268 23 C 0.103 3.897 24 H 0.067 0.933 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.078 0.922 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.092 0.908 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.037 0.963 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.039 0.961 37 H 0.040 0.960 38 H -0.001 1.001 39 H 0.001 0.999 40 H 0.265 0.735 41 H 0.086 0.914 42 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.568 -8.763 -20.476 23.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.125 4.125 3 H 0.080 0.920 4 C -0.147 4.147 5 C -0.164 4.164 6 C 0.036 3.964 7 H 0.100 0.900 8 C -0.188 4.188 9 N -0.345 5.345 10 C 0.302 3.698 11 O -0.448 6.448 12 C -0.170 4.170 13 C -0.118 4.118 14 C -0.010 4.010 15 C -0.586 4.586 16 H 0.069 0.931 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.786 3.214 20 H -0.197 1.197 21 H -0.202 1.202 22 H -0.193 1.193 23 C -0.019 4.019 24 H 0.086 0.914 25 H 0.075 0.925 26 H 0.084 0.916 27 H 0.096 0.904 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.111 0.889 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.056 0.944 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.018 0.982 39 H 0.019 0.981 40 H 0.074 0.926 41 H 0.104 0.896 42 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -7.051 -8.792 -20.379 23.288 hybrid contribution 0.674 0.530 0.984 1.305 sum -6.377 -8.262 -19.395 22.025 Atomic orbital electron populations 1.21742 0.92897 1.02810 1.02489 1.21576 0.97031 0.99319 0.94606 0.92017 1.21582 0.94006 1.01509 0.97600 1.21977 0.96870 1.00471 0.97057 1.21408 0.93389 0.97271 0.84356 0.89959 1.22036 0.94328 1.01718 1.00727 1.48302 1.07702 1.60833 1.17652 1.21004 0.86703 0.78238 0.83875 1.90710 1.16780 1.58263 1.79094 1.21713 0.99826 1.01265 0.94173 1.21143 0.96601 0.98917 0.95097 1.19009 0.95190 0.94335 0.92472 1.21676 0.94561 1.36587 1.05761 0.93120 1.25900 0.97847 0.95679 0.99956 1.70068 1.18579 1.41104 1.27172 0.85496 0.79057 0.78820 0.77988 1.19702 1.20203 1.19293 1.22186 0.77763 1.02102 0.99823 0.91439 0.92458 0.91601 0.90354 0.90546 0.92984 0.88944 0.92925 0.91769 0.94413 0.87961 0.88263 0.94263 0.94108 0.98231 0.98107 0.92638 0.89595 0.89311 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.20 71.98 0.66 -0.97 16 2 C -0.11 -1.60 2.89 -10.57 -0.03 -1.63 16 3 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 4 C -0.11 -1.40 5.16 30.62 0.16 -1.24 16 5 C -0.13 -2.05 5.37 30.67 0.16 -1.88 16 6 C 0.14 3.00 3.49 44.97 0.16 3.15 16 7 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 8 C -0.13 -3.48 7.61 71.98 0.55 -2.94 16 9 N -0.61 -15.39 2.97 -794.19 -2.36 -17.75 16 10 C 0.51 17.26 7.50 87.66 0.66 17.91 16 11 O -0.57 -23.14 11.55 -3.04 -0.04 -23.17 16 12 C -0.13 -4.50 4.06 29.85 0.12 -4.38 16 13 C -0.08 -3.62 4.44 30.59 0.14 -3.48 16 14 C 0.03 1.46 4.97 29.85 0.15 1.61 16 15 C -0.55 -32.76 9.11 25.60 0.23 -32.52 16 16 H 0.05 3.00 7.74 -2.91 -0.02 2.98 16 17 C 0.00 0.25 5.46 84.65 0.46 0.71 16 18 N -0.93 -56.88 13.29 21.45 0.28 -56.59 16 19 Si 0.96 45.63 29.54 68.60 2.03 47.65 16 20 H -0.27 -12.43 7.11 99.48 0.71 -11.73 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 22 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 23 C 0.10 1.91 5.66 86.51 0.49 2.40 16 24 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 25 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.06 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 28 H 0.08 0.82 8.14 -2.38 -0.02 0.80 16 29 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.05 1.69 6.54 -2.38 -0.02 1.67 16 32 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.04 1.20 6.96 -2.39 -0.02 1.18 16 34 H 0.10 3.18 7.69 -2.39 -0.02 3.16 16 35 H 0.10 3.16 7.94 -2.39 -0.02 3.14 16 36 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 37 H 0.04 1.93 8.10 -2.39 -0.02 1.91 16 38 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 39 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 40 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 41 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.09 1.70 5.93 -2.38 -0.01 1.68 16 Total: -1.00 -70.38 326.74 4.78 -65.60 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: 0.95 Total: 7.53 kcal Atomic # 6 Polarization: -27.18 SS G_CDS: 3.91 Total: -23.27 kcal Atomic # 7 Polarization: -72.27 SS G_CDS: -2.07 Total: -74.34 kcal Atomic # 8 Polarization: -23.14 SS G_CDS: -0.04 Total: -23.17 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -70.38 4.78 -65.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593986637.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.684 kcal (2) G-P(sol) polarization free energy of solvation -70.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds