Wall clock time and date at job start Mon Mar 30 2020 07:06:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09003 * 110.43559 * 2 1 4 4 C 1.54264 * 110.49014 * 237.45706 * 2 1 3 5 5 C 1.53866 * 106.60228 * 217.71034 * 4 2 1 6 6 C 1.54265 * 106.59784 * 0.02562 * 5 4 2 7 7 H 1.08992 * 110.48777 * 264.79405 * 6 5 4 8 8 C 1.53010 * 110.48753 * 142.28499 * 6 5 4 9 9 N 1.46502 * 109.46871 * 66.45250 * 8 6 5 10 10 C 1.34774 * 119.99807 * 180.02562 * 9 8 6 11 11 O 1.21276 * 120.00234 * 359.97438 * 10 9 8 12 12 C 1.50708 * 119.99862 * 180.02562 * 10 9 8 13 13 C 1.53003 * 109.46936 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.46731 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.46666 * 179.97438 * 14 13 12 16 16 H 1.07996 * 119.99905 * 0.02562 * 15 14 13 17 17 C 1.37882 * 119.99497 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00342 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99488 * 180.02562 * 17 15 14 20 20 H 1.48498 * 109.47628 * 60.00411 * 19 17 15 21 21 H 1.48502 * 109.47070 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47258 * 299.99989 * 19 17 15 23 23 C 1.54887 * 104.19777 * 23.60908 * 6 5 4 24 24 H 1.09002 * 109.47153 * 181.08609 * 1 2 3 25 25 H 1.09001 * 109.46832 * 61.08800 * 1 2 3 26 26 H 1.09004 * 109.47261 * 301.08782 * 1 2 3 27 27 H 1.08995 * 110.03267 * 337.00157 * 4 2 1 28 28 H 1.09009 * 110.02918 * 98.37645 * 4 2 1 29 29 H 1.09007 * 110.03015 * 119.28349 * 5 4 2 30 30 H 1.08997 * 110.03714 * 240.66479 * 5 4 2 31 31 H 1.08994 * 109.47063 * 186.45211 * 8 6 5 32 32 H 1.08998 * 109.46865 * 306.45699 * 8 6 5 33 33 H 0.97002 * 120.00112 * 0.02562 * 9 8 6 34 34 H 1.09002 * 109.46453 * 299.99238 * 12 10 9 35 35 H 1.08994 * 109.47426 * 59.99248 * 12 10 9 36 36 H 1.08994 * 109.46826 * 299.99215 * 13 12 10 37 37 H 1.08998 * 109.47092 * 59.99696 * 13 12 10 38 38 H 1.08994 * 109.47270 * 299.99488 * 14 13 12 39 39 H 1.08998 * 109.47135 * 60.00268 * 14 13 12 40 40 H 0.96997 * 120.00238 * 179.97438 * 18 17 15 41 41 H 1.08993 * 110.75806 * 203.74223 * 23 6 5 42 42 H 1.09002 * 110.75484 * 80.36636 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9106 1.0214 0.0000 4 6 2.0700 -0.7773 -1.2181 5 6 3.3166 -1.5395 -0.7359 6 6 3.4903 -1.1993 0.7587 7 1 4.1910 -0.3738 0.8831 8 6 3.9688 -2.4277 1.5354 9 7 5.3223 -2.7829 1.1018 10 6 5.9506 -3.8404 1.6526 11 8 5.3957 -4.4977 2.5074 12 6 7.3432 -4.2054 1.2069 13 6 7.8216 -5.4338 1.9835 14 6 9.2352 -5.8048 1.5306 15 6 9.7067 -7.0143 2.2960 16 1 9.0623 -7.4728 3.0315 17 6 10.9602 -7.5362 2.0563 18 7 11.7446 -6.9782 1.1603 19 14 11.5443 -9.0359 3.0046 20 1 10.6264 -10.1740 2.7452 21 1 12.9163 -9.3959 2.5651 22 1 11.5549 -8.7296 4.4577 23 6 2.0716 -0.7843 1.2213 24 1 -0.3633 -1.0275 0.0195 25 1 -0.3633 0.4969 -0.8996 26 1 -0.3634 0.5307 0.8801 27 1 1.3177 -1.4802 -1.5759 28 1 2.3404 -0.0832 -2.0140 29 1 3.1692 -2.6125 -0.8596 30 1 4.1927 -1.2161 -1.2979 31 1 3.9762 -2.2030 2.6019 32 1 3.2952 -3.2632 1.3447 33 1 5.7663 -2.2569 0.4183 34 1 7.3362 -4.4296 0.1402 35 1 8.0167 -3.3700 1.3982 36 1 7.8287 -5.2092 3.0500 37 1 7.1483 -6.2694 1.7925 38 1 9.2278 -6.0295 0.4641 39 1 9.9088 -4.9693 1.7213 40 1 12.6266 -7.3451 0.9920 41 1 2.1243 -0.1420 2.1002 42 1 1.4576 -1.6628 1.4197 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594014644.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:01 Heat of formation + Delta-G solvation = -108.129371 kcal Electronic energy + Delta-G solvation = -18114.482951 eV Core-core repulsion = 15284.461143 eV Total energy + Delta-G solvation = -2830.021808 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.86308 -39.45468 -36.22208 -35.73012 -34.02950 -32.38192 -30.39623 -29.59640 -27.18920 -25.63898 -24.47284 -22.30006 -21.49030 -20.79968 -20.42991 -18.59513 -17.73528 -17.28101 -16.76693 -16.63309 -16.47829 -15.39333 -15.18264 -14.82872 -14.50134 -14.35187 -14.19201 -13.92223 -13.73934 -13.47901 -13.05278 -12.76515 -12.59415 -12.50809 -12.43123 -12.00611 -11.86344 -11.66065 -11.56960 -11.55010 -11.46268 -11.44383 -11.27734 -11.22022 -10.71404 -10.53963 -10.06552 -8.19988 -6.30029 1.39523 1.42594 1.50683 1.67517 2.25020 2.42493 3.12717 3.59994 3.62560 3.79808 3.95604 4.22425 4.23888 4.28483 4.34537 4.45771 4.50193 4.67448 4.72587 4.73670 4.78295 4.82906 4.90318 4.97890 4.99465 5.11394 5.11875 5.15300 5.19469 5.22357 5.33239 5.36865 5.46938 5.52097 5.56018 5.59887 5.75885 5.87138 6.27830 6.58837 6.85159 7.30164 7.38456 8.91330 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.067387 B = 0.002766 C = 0.002705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 415.408750 B =10122.317344 C =10349.964693 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.095 4.095 3 H 0.080 0.920 4 C -0.120 4.120 5 C -0.123 4.123 6 C -0.095 4.095 7 H 0.093 0.907 8 C 0.127 3.873 9 N -0.717 5.717 10 C 0.513 3.487 11 O -0.588 6.588 12 C -0.131 4.131 13 C -0.083 4.083 14 C 0.026 3.974 15 C -0.549 4.549 16 H 0.051 0.949 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.962 3.038 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.113 4.113 24 H 0.051 0.949 25 H 0.059 0.941 26 H 0.057 0.943 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.416 0.584 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.001 0.999 39 H 0.001 0.999 40 H 0.265 0.735 41 H 0.074 0.926 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.201 17.652 -5.595 27.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.113 4.113 3 H 0.099 0.901 4 C -0.157 4.157 5 C -0.160 4.160 6 C -0.114 4.114 7 H 0.111 0.889 8 C 0.003 3.997 9 N -0.370 5.370 10 C 0.301 3.699 11 O -0.468 6.468 12 C -0.170 4.170 13 C -0.121 4.121 14 C -0.011 4.011 15 C -0.587 4.587 16 H 0.069 0.931 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.787 3.213 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.194 1.194 23 C -0.151 4.151 24 H 0.070 0.930 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.070 0.930 33 H 0.252 0.748 34 H 0.126 0.874 35 H 0.127 0.873 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.074 0.926 41 H 0.093 0.907 42 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.447 17.186 -5.083 27.189 hybrid contribution 0.732 -0.754 0.166 1.064 sum -19.714 16.432 -4.917 26.131 Atomic orbital electron populations 1.21805 0.94642 1.01750 1.02015 1.21959 0.95826 0.99326 0.94202 0.90144 1.22214 0.96839 0.98853 0.97843 1.22237 0.98926 1.00139 0.94742 1.22193 0.98186 0.96023 0.94981 0.88905 1.21416 0.82532 0.97128 0.98596 1.45922 1.17350 1.30839 1.42879 1.21087 0.88455 0.79676 0.80669 1.90658 1.68791 1.53360 1.34028 1.21681 0.92386 1.00265 1.02691 1.21160 0.96655 0.95807 0.98472 1.19018 0.91712 0.95038 0.95338 1.21671 1.00798 1.14018 1.22219 0.93103 1.25917 0.96868 1.00469 0.96294 1.70055 1.09735 1.42453 1.34661 0.85549 0.77439 0.79313 0.79041 1.19441 1.20306 1.19437 1.22575 0.94241 1.00016 0.98231 0.93009 0.92213 0.92352 0.92022 0.91158 0.92647 0.90716 0.92720 0.92967 0.74754 0.87391 0.87343 0.94183 0.94226 0.98048 0.98033 0.92637 0.90748 0.91626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.45 9.11 71.98 0.66 -0.79 16 2 C -0.09 -1.02 3.46 -9.71 -0.03 -1.05 16 3 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 4 C -0.12 -1.37 6.37 31.31 0.20 -1.17 16 5 C -0.12 -1.59 6.05 31.32 0.19 -1.40 16 6 C -0.10 -1.30 2.93 -9.72 -0.03 -1.33 16 7 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 8 C 0.13 2.61 4.99 86.38 0.43 3.04 16 9 N -0.72 -16.07 5.39 -463.05 -2.50 -18.57 16 10 C 0.51 16.59 7.83 87.66 0.69 17.27 16 11 O -0.59 -24.60 15.98 -3.02 -0.05 -24.64 16 12 C -0.13 -4.29 5.70 29.85 0.17 -4.12 16 13 C -0.08 -3.72 4.44 30.60 0.14 -3.58 16 14 C 0.03 1.40 4.97 29.85 0.15 1.55 16 15 C -0.55 -32.72 9.11 25.60 0.23 -32.49 16 16 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 17 C 0.00 0.15 5.46 84.66 0.46 0.61 16 18 N -0.93 -56.80 13.29 21.45 0.28 -56.51 16 19 Si 0.96 45.58 29.54 68.60 2.03 47.60 16 20 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 23 C -0.11 -1.41 5.75 31.89 0.18 -1.23 16 24 H 0.05 0.56 8.14 -2.39 -0.02 0.54 16 25 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 26 H 0.06 0.54 8.14 -2.38 -0.02 0.52 16 27 H 0.06 0.74 7.84 -2.39 -0.02 0.72 16 28 H 0.07 0.70 8.14 -2.38 -0.02 0.68 16 29 H 0.05 0.87 7.77 -2.38 -0.02 0.86 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.05 1.25 8.14 -2.39 -0.02 1.24 16 32 H 0.05 1.23 8.05 -2.39 -0.02 1.21 16 33 H 0.42 6.59 8.32 -92.71 -0.77 5.82 16 34 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 35 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.04 1.88 8.10 -2.39 -0.02 1.86 16 37 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 38 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 39 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.26 15.17 8.31 -92.71 -0.77 14.40 16 41 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 42 H 0.07 0.92 7.97 -2.39 -0.02 0.90 16 Total: -1.00 -71.58 339.74 3.39 -68.19 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: 0.19 Total: 8.61 kcal Atomic # 6 Polarization: -28.11 SS G_CDS: 3.43 Total: -24.68 kcal Atomic # 7 Polarization: -72.87 SS G_CDS: -2.21 Total: -75.08 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.64 kcal Atomic # 14 Polarization: 45.58 SS G_CDS: 2.03 Total: 47.60 kcal Total: -71.58 3.39 -68.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594014644.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.941 kcal (2) G-P(sol) polarization free energy of solvation -71.576 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.517 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.129 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds