Wall clock time and date at job start Mon Mar 30 2020 07:06:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 110.01654 * 2 1 4 4 C 1.54264 * 110.03588 * 238.60998 * 2 1 3 5 5 C 1.54892 * 104.19651 * 217.05788 * 4 2 1 6 6 C 1.54891 * 102.74959 * 37.93955 * 5 4 2 7 7 H 1.09002 * 110.48740 * 80.73781 * 6 5 4 8 8 C 1.53004 * 110.48666 * 203.25066 * 6 5 4 9 9 N 1.46500 * 109.46676 * 291.75486 * 8 6 5 10 10 C 1.34775 * 120.00036 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99514 * 0.02562 * 10 9 8 12 12 C 1.50701 * 120.00390 * 179.97438 * 10 9 8 13 13 C 1.52995 * 109.46954 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.46702 * 180.02562 * 13 12 10 15 15 C 1.50705 * 109.46840 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00417 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99828 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99842 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99890 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47195 * 60.00252 * 19 17 15 21 21 H 1.48504 * 109.47036 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47422 * 299.99802 * 19 17 15 23 23 C 1.54224 * 110.06455 * 121.37456 * 2 1 3 24 24 H 1.08996 * 109.46759 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46948 * 299.93598 * 1 2 3 26 26 H 1.08999 * 109.46866 * 59.93858 * 1 2 3 27 27 H 1.08993 * 110.49070 * 98.37610 * 4 2 1 28 28 H 1.09001 * 110.59511 * 335.78978 * 4 2 1 29 29 H 1.09000 * 110.75513 * 279.62815 * 5 4 2 30 30 H 1.09002 * 110.91731 * 156.32611 * 5 4 2 31 31 H 1.08992 * 109.46942 * 51.75255 * 8 6 5 32 32 H 1.08994 * 109.47049 * 171.75880 * 8 6 5 33 33 H 0.97002 * 120.00161 * 0.02562 * 9 8 6 34 34 H 1.09001 * 109.47002 * 300.00661 * 12 10 9 35 35 H 1.09007 * 109.46614 * 60.00471 * 12 10 9 36 36 H 1.09001 * 109.47619 * 300.00054 * 13 12 10 37 37 H 1.08998 * 109.47424 * 60.00873 * 13 12 10 38 38 H 1.09002 * 109.47029 * 299.99652 * 14 13 12 39 39 H 1.08994 * 109.47206 * 60.00367 * 14 13 12 40 40 H 0.97007 * 120.00073 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.14251 * 0.05997 * 23 2 1 42 42 H 1.09004 * 110.08793 * 238.52241 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7549 -1.2372 5 6 3.3145 -1.4994 -0.7200 6 6 2.8891 -1.9398 0.7027 7 1 2.2794 -2.8422 0.6565 8 6 4.1197 -2.1711 1.5820 9 7 4.8500 -3.3463 1.1005 10 6 5.9762 -3.7427 1.7257 11 8 6.3848 -3.1268 2.6873 12 6 6.7271 -4.9519 1.2308 13 6 7.9577 -5.1831 2.1100 14 6 8.7205 -6.4105 1.6070 15 6 9.9323 -6.6386 2.4734 16 1 10.1382 -5.9744 3.2997 17 6 10.7782 -7.6952 2.2111 18 7 10.5273 -8.5043 1.2051 19 14 12.2807 -7.9776 3.2845 20 1 11.8511 -8.2019 4.6881 21 1 13.0209 -9.1689 2.7964 22 1 13.1649 -6.7861 3.2218 23 6 2.0591 -0.7542 1.2368 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5129 0.8906 26 1 -0.3633 0.5148 -0.8894 27 1 2.3290 -0.0528 -2.0258 28 1 1.3156 -1.4658 -1.5989 29 1 4.1713 -0.8271 -0.6762 30 1 3.5368 -2.3662 -1.3424 31 1 4.7684 -1.2964 1.5364 32 1 3.8043 -2.3363 2.6122 33 1 4.5234 -3.8386 0.3312 34 1 6.0783 -5.8266 1.2771 35 1 7.0421 -4.7873 0.2003 36 1 8.6067 -4.3085 2.0640 37 1 7.6425 -5.3479 3.1402 38 1 8.0718 -7.2852 1.6527 39 1 9.0358 -6.2453 0.5769 40 1 11.1223 -9.2480 1.0207 41 1 1.2267 -1.1215 1.8370 42 1 2.6897 -0.0964 1.8350 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594014648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:09 Heat of formation + Delta-G solvation = -88.055990 kcal Electronic energy + Delta-G solvation = -18118.285557 eV Core-core repulsion = 15289.134196 eV Total energy + Delta-G solvation = -2829.151360 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.71918 -38.65719 -34.84302 -34.09614 -32.08801 -31.49824 -29.66447 -27.98594 -26.15241 -24.32192 -23.26702 -20.71752 -20.60617 -19.96292 -19.41490 -16.90606 -16.33959 -16.03388 -15.64975 -15.16602 -15.00956 -14.40385 -14.13182 -13.77765 -13.56156 -13.28582 -13.06472 -12.66160 -12.22291 -12.20588 -11.80987 -11.39995 -11.30337 -11.09499 -11.06979 -11.00635 -10.93360 -10.75713 -10.71207 -10.57917 -10.52074 -9.63552 -9.63448 -9.22471 -8.98703 -8.93738 -8.29091 -5.94986 -3.96265 2.99749 3.36134 3.38567 3.41718 3.45999 4.20395 4.27457 4.35659 4.51671 4.79863 4.94833 5.04609 5.13878 5.16596 5.21246 5.28900 5.34957 5.40912 5.44048 5.51388 5.60626 5.71355 5.73205 5.75764 5.78442 5.79009 5.82507 5.92999 6.09680 6.10403 6.31285 6.56007 6.77270 6.97737 7.20416 7.67159 7.74366 7.87376 8.05944 8.49817 8.53109 9.10653 9.67407 11.16506 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.068362 B = 0.002766 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.484445 B =10121.712355 C =10357.958250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.098 4.098 3 H 0.071 0.929 4 C -0.121 4.121 5 C -0.121 4.121 6 C -0.104 4.104 7 H 0.080 0.920 8 C 0.126 3.874 9 N -0.740 5.740 10 C 0.511 3.489 11 O -0.540 6.540 12 C -0.139 4.139 13 C -0.095 4.095 14 C 0.020 3.980 15 C -0.518 4.518 16 H 0.055 0.945 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.893 3.107 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.277 1.277 23 C -0.114 4.114 24 H 0.055 0.945 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.064 0.936 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.063 0.937 33 H 0.398 0.602 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.260 0.740 41 H 0.067 0.933 42 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.931 15.043 -5.792 26.418 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 H 0.089 0.911 4 C -0.158 4.158 5 C -0.159 4.159 6 C -0.123 4.123 7 H 0.098 0.902 8 C 0.002 3.998 9 N -0.393 5.393 10 C 0.299 3.701 11 O -0.416 6.416 12 C -0.179 4.179 13 C -0.133 4.133 14 C -0.017 4.017 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.721 3.279 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.202 1.202 23 C -0.152 4.152 24 H 0.074 0.926 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.232 0.768 34 H 0.106 0.894 35 H 0.106 0.894 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.070 0.930 41 H 0.086 0.914 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -20.559 15.344 -5.162 26.168 hybrid contribution 0.621 -0.465 0.125 0.786 sum -19.938 14.879 -5.038 25.383 Atomic orbital electron populations 1.21888 0.95088 1.01770 1.01497 1.21803 0.95588 0.99463 0.94760 0.91096 1.22437 0.97313 0.98965 0.97093 1.22590 0.97848 1.00129 0.95308 1.22244 0.95809 0.99038 0.95221 0.90164 1.21339 0.92131 0.88680 0.97601 1.46131 1.27230 1.31276 1.34659 1.21260 0.79927 0.86191 0.82736 1.90672 1.67212 1.56515 1.27207 1.21840 0.99120 0.94739 1.02158 1.21440 0.93386 1.00621 0.97851 1.19132 0.94533 0.91579 0.96421 1.21245 1.08614 1.11756 1.14011 0.92636 1.25023 0.98065 0.96063 0.95398 1.69954 1.38130 1.16669 1.29040 0.86647 0.82956 0.77508 0.80835 1.20233 1.21350 1.20238 1.22272 0.99187 0.96353 0.97356 0.92593 0.92775 0.92830 0.91764 0.91509 0.91135 0.91395 0.91721 0.91857 0.76781 0.89437 0.89434 0.92748 0.92742 0.96627 0.96625 0.93035 0.91392 0.91364 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.83 8.85 37.16 0.33 -0.50 16 2 C -0.10 -0.63 3.50 -89.32 -0.31 -0.95 16 3 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 4 C -0.12 -0.78 6.36 -25.07 -0.16 -0.94 16 5 C -0.12 -0.89 6.10 -24.74 -0.15 -1.04 16 6 C -0.10 -0.81 2.90 -88.96 -0.26 -1.07 16 7 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 8 C 0.13 1.36 4.96 -4.04 -0.02 1.34 16 9 N -0.74 -8.85 5.42 -60.30 -0.33 -9.18 16 10 C 0.51 8.44 7.83 -10.99 -0.09 8.35 16 11 O -0.54 -11.17 15.98 5.56 0.09 -11.08 16 12 C -0.14 -2.34 5.70 -27.88 -0.16 -2.50 16 13 C -0.09 -2.10 4.44 -26.73 -0.12 -2.22 16 14 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -15.21 9.11 -34.44 -0.31 -15.52 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.37 13.29 55.43 0.74 -26.63 16 19 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 20 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.29 -7.05 7.11 56.52 0.40 -6.64 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 23 C -0.11 -0.81 6.05 -25.43 -0.15 -0.96 16 24 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 25 H 0.05 0.30 8.14 -51.93 -0.42 -0.13 16 26 H 0.05 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.41 7.86 -51.93 -0.41 0.01 16 29 H 0.07 0.58 8.00 -51.93 -0.42 0.16 16 30 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.77 8.06 -51.93 -0.42 0.35 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.40 3.66 8.38 -40.82 -0.34 3.32 16 34 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 35 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 36 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 37 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.07 0.46 7.69 -51.93 -0.40 0.06 16 42 H 0.07 0.51 7.84 -51.93 -0.41 0.10 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -33.14 339.55 -8.89 -42.03 By element: Atomic # 1 Polarization: 4.45 SS G_CDS: -7.85 Total: -3.40 kcal Atomic # 6 Polarization: -12.45 SS G_CDS: -1.64 Total: -14.09 kcal Atomic # 7 Polarization: -36.22 SS G_CDS: 0.41 Total: -35.81 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: 0.09 Total: -11.08 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.14 -8.89 -42.03 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594014648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.029 kcal (2) G-P(sol) polarization free energy of solvation -33.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds