Wall clock time and date at job start Mon Mar 30 2020 07:06:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09009 * 110.01654 * 2 1 4 4 C 1.54264 * 110.03588 * 238.60998 * 2 1 3 5 5 C 1.54892 * 104.19651 * 217.05788 * 4 2 1 6 6 C 1.54891 * 102.74959 * 37.93955 * 5 4 2 7 7 H 1.09002 * 110.48740 * 80.73781 * 6 5 4 8 8 C 1.53004 * 110.48666 * 203.25066 * 6 5 4 9 9 N 1.46500 * 109.46676 * 291.75486 * 8 6 5 10 10 C 1.34775 * 120.00036 * 179.97438 * 9 8 6 11 11 O 1.21283 * 119.99514 * 0.02562 * 10 9 8 12 12 C 1.50701 * 120.00390 * 179.97438 * 10 9 8 13 13 C 1.52995 * 109.46954 * 180.02562 * 12 10 9 14 14 C 1.53008 * 109.46702 * 180.02562 * 13 12 10 15 15 C 1.50705 * 109.46840 * 180.02562 * 14 13 12 16 16 H 1.07995 * 120.00417 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99828 * 179.97438 * 15 14 13 18 18 N 1.31511 * 119.99842 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 119.99890 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47195 * 60.00252 * 19 17 15 21 21 H 1.48504 * 109.47036 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47422 * 299.99802 * 19 17 15 23 23 C 1.54224 * 110.06455 * 121.37456 * 2 1 3 24 24 H 1.08996 * 109.46759 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.46948 * 299.93598 * 1 2 3 26 26 H 1.08999 * 109.46866 * 59.93858 * 1 2 3 27 27 H 1.08993 * 110.49070 * 98.37610 * 4 2 1 28 28 H 1.09001 * 110.59511 * 335.78978 * 4 2 1 29 29 H 1.09000 * 110.75513 * 279.62815 * 5 4 2 30 30 H 1.09002 * 110.91731 * 156.32611 * 5 4 2 31 31 H 1.08992 * 109.46942 * 51.75255 * 8 6 5 32 32 H 1.08994 * 109.47049 * 171.75880 * 8 6 5 33 33 H 0.97002 * 120.00161 * 0.02562 * 9 8 6 34 34 H 1.09001 * 109.47002 * 300.00661 * 12 10 9 35 35 H 1.09007 * 109.46614 * 60.00471 * 12 10 9 36 36 H 1.09001 * 109.47619 * 300.00054 * 13 12 10 37 37 H 1.08998 * 109.47424 * 60.00873 * 13 12 10 38 38 H 1.09002 * 109.47029 * 299.99652 * 14 13 12 39 39 H 1.08994 * 109.47206 * 60.00367 * 14 13 12 40 40 H 0.97007 * 120.00073 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.14251 * 0.05997 * 23 2 1 42 42 H 1.09004 * 110.08793 * 238.52241 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9031 1.0242 0.0000 4 6 2.0585 -0.7549 -1.2372 5 6 3.3145 -1.4994 -0.7200 6 6 2.8891 -1.9398 0.7027 7 1 2.2794 -2.8422 0.6565 8 6 4.1197 -2.1711 1.5820 9 7 4.8500 -3.3463 1.1005 10 6 5.9762 -3.7427 1.7257 11 8 6.3848 -3.1268 2.6873 12 6 6.7271 -4.9519 1.2308 13 6 7.9577 -5.1831 2.1100 14 6 8.7205 -6.4105 1.6070 15 6 9.9323 -6.6386 2.4734 16 1 10.1382 -5.9744 3.2997 17 6 10.7782 -7.6952 2.2111 18 7 10.5273 -8.5043 1.2051 19 14 12.2807 -7.9776 3.2845 20 1 11.8511 -8.2019 4.6881 21 1 13.0209 -9.1689 2.7964 22 1 13.1649 -6.7861 3.2218 23 6 2.0591 -0.7542 1.2368 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5129 0.8906 26 1 -0.3633 0.5148 -0.8894 27 1 2.3290 -0.0528 -2.0258 28 1 1.3156 -1.4658 -1.5989 29 1 4.1713 -0.8271 -0.6762 30 1 3.5368 -2.3662 -1.3424 31 1 4.7684 -1.2964 1.5364 32 1 3.8043 -2.3363 2.6122 33 1 4.5234 -3.8386 0.3312 34 1 6.0783 -5.8266 1.2771 35 1 7.0421 -4.7873 0.2003 36 1 8.6067 -4.3085 2.0640 37 1 7.6425 -5.3479 3.1402 38 1 8.0718 -7.2852 1.6527 39 1 9.0358 -6.2453 0.5769 40 1 11.1223 -9.2480 1.0207 41 1 1.2267 -1.1215 1.8370 42 1 2.6897 -0.0964 1.8350 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594014648.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:08 Heat of formation + Delta-G solvation = -107.966574 kcal Electronic energy + Delta-G solvation = -18119.148945 eV Core-core repulsion = 15289.134196 eV Total energy + Delta-G solvation = -2830.014748 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.85835 -39.46770 -36.22087 -35.72726 -34.02790 -32.34538 -30.40999 -29.59657 -27.12615 -25.63960 -24.49011 -22.28962 -21.40375 -21.15503 -20.22865 -18.60012 -17.74214 -17.30722 -16.84308 -16.48449 -16.03056 -15.89064 -15.25315 -14.77595 -14.42720 -14.30348 -14.17629 -13.93018 -13.75327 -13.41828 -13.07506 -12.84145 -12.58846 -12.50604 -12.42837 -12.01024 -11.73083 -11.63571 -11.58108 -11.55005 -11.49625 -11.45924 -11.27517 -11.25385 -10.71912 -10.53870 -10.06188 -8.19930 -6.29943 1.39568 1.42642 1.50725 1.67727 2.25367 2.42575 3.12802 3.60059 3.65547 3.78287 3.95639 4.20652 4.24115 4.27835 4.35176 4.43787 4.59035 4.60630 4.69146 4.77291 4.77977 4.85115 4.90484 4.98295 5.01002 5.09239 5.11871 5.17301 5.19748 5.21170 5.35010 5.38595 5.42846 5.52835 5.56436 5.60530 5.76033 5.87257 6.27927 6.59106 6.85248 7.30427 7.38547 8.91380 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.068362 B = 0.002766 C = 0.002703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 409.484445 B =10121.712355 C =10357.958250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.097 4.097 3 H 0.068 0.932 4 C -0.118 4.118 5 C -0.122 4.122 6 C -0.095 4.095 7 H 0.092 0.908 8 C 0.127 3.873 9 N -0.717 5.717 10 C 0.513 3.487 11 O -0.588 6.588 12 C -0.130 4.130 13 C -0.083 4.083 14 C 0.026 3.974 15 C -0.549 4.549 16 H 0.051 0.949 17 C 0.003 3.997 18 N -0.929 5.929 19 Si 0.962 3.038 20 H -0.269 1.269 21 H -0.278 1.278 22 H -0.269 1.269 23 C -0.114 4.114 24 H 0.057 0.943 25 H 0.054 0.946 26 H 0.057 0.943 27 H 0.067 0.933 28 H 0.073 0.927 29 H 0.059 0.941 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.416 0.584 34 H 0.108 0.892 35 H 0.108 0.892 36 H 0.039 0.961 37 H 0.039 0.961 38 H 0.001 0.999 39 H 0.001 0.999 40 H 0.265 0.735 41 H 0.073 0.927 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.861 15.189 -6.336 27.364 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.116 4.116 3 H 0.087 0.913 4 C -0.155 4.155 5 C -0.160 4.160 6 C -0.113 4.113 7 H 0.110 0.890 8 C 0.003 3.997 9 N -0.370 5.370 10 C 0.301 3.699 11 O -0.469 6.469 12 C -0.170 4.170 13 C -0.121 4.121 14 C -0.011 4.011 15 C -0.587 4.587 16 H 0.069 0.931 17 C -0.195 4.195 18 N -0.569 5.569 19 Si 0.787 3.213 20 H -0.194 1.194 21 H -0.203 1.203 22 H -0.195 1.195 23 C -0.152 4.152 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.076 0.924 27 H 0.086 0.914 28 H 0.092 0.908 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.071 0.929 32 H 0.072 0.928 33 H 0.253 0.747 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.058 0.942 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.020 0.980 40 H 0.074 0.926 41 H 0.092 0.908 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -21.536 15.493 -5.746 27.145 hybrid contribution 0.872 -0.496 0.264 1.037 sum -20.664 14.997 -5.482 26.114 Atomic orbital electron populations 1.21871 0.94364 1.01996 1.01832 1.21803 0.96183 0.99247 0.94369 0.91301 1.22426 0.96924 0.99060 0.97091 1.22598 0.97952 1.00361 0.95054 1.22187 0.94443 0.99850 0.94852 0.89012 1.21424 0.92911 0.87450 0.97899 1.45917 1.25585 1.31206 1.34253 1.21089 0.80790 0.85715 0.82290 1.90660 1.68776 1.57973 1.29455 1.21680 0.97359 0.96064 1.01912 1.21161 0.95018 0.97934 0.97988 1.19020 0.94009 0.92772 0.95301 1.21671 1.10177 1.12251 1.14605 0.93109 1.25916 1.01254 0.95616 0.96762 1.70059 1.39389 1.17087 1.30369 0.85549 0.78943 0.77807 0.79046 1.19433 1.20305 1.19450 1.22285 0.99153 0.96038 0.97741 0.92397 0.92644 0.92356 0.91437 0.90802 0.92214 0.90601 0.92909 0.92824 0.74741 0.87346 0.87355 0.94220 0.94201 0.98036 0.98034 0.92640 0.90809 0.92035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.36 8.85 71.98 0.64 -0.73 16 2 C -0.10 -1.10 3.50 -9.95 -0.03 -1.13 16 3 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 4 C -0.12 -1.28 6.36 31.67 0.20 -1.08 16 5 C -0.12 -1.56 6.10 31.89 0.19 -1.36 16 6 C -0.09 -1.30 2.90 -9.72 -0.03 -1.32 16 7 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 8 C 0.13 2.61 4.96 86.38 0.43 3.03 16 9 N -0.72 -16.01 5.42 -463.07 -2.51 -18.52 16 10 C 0.51 16.56 7.83 87.66 0.69 17.24 16 11 O -0.59 -24.60 15.98 -3.04 -0.05 -24.65 16 12 C -0.13 -4.28 5.70 29.85 0.17 -4.11 16 13 C -0.08 -3.72 4.44 30.60 0.14 -3.58 16 14 C 0.03 1.40 4.97 29.85 0.15 1.55 16 15 C -0.55 -32.71 9.11 25.60 0.23 -32.47 16 16 H 0.05 2.99 7.74 -2.91 -0.02 2.97 16 17 C 0.00 0.15 5.46 84.66 0.46 0.61 16 18 N -0.93 -56.78 13.29 21.45 0.28 -56.49 16 19 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 20 H -0.27 -12.36 7.11 99.48 0.71 -11.66 16 21 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 23 C -0.11 -1.46 6.05 31.44 0.19 -1.27 16 24 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 25 H 0.05 0.51 8.14 -2.38 -0.02 0.49 16 26 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 27 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.72 7.86 -2.39 -0.02 0.70 16 29 H 0.06 0.91 8.00 -2.39 -0.02 0.89 16 30 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 31 H 0.05 1.24 8.06 -2.39 -0.02 1.22 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.42 6.53 8.38 -92.71 -0.78 5.76 16 34 H 0.11 3.12 8.14 -2.39 -0.02 3.10 16 35 H 0.11 3.12 8.14 -2.38 -0.02 3.10 16 36 H 0.04 1.86 8.10 -2.39 -0.02 1.84 16 37 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 38 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 39 H 0.00 0.07 8.14 -2.39 -0.02 0.05 16 40 H 0.26 15.16 8.31 -92.70 -0.77 14.39 16 41 H 0.07 0.87 7.69 -2.39 -0.02 0.85 16 42 H 0.06 0.87 7.84 -2.38 -0.02 0.85 16 Total: -1.00 -71.57 339.55 3.36 -68.21 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.18 Total: 8.47 kcal Atomic # 6 Polarization: -28.04 SS G_CDS: 3.42 Total: -24.61 kcal Atomic # 7 Polarization: -72.78 SS G_CDS: -2.22 Total: -75.01 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.65 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -71.57 3.36 -68.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594014648.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.759 kcal (2) G-P(sol) polarization free energy of solvation -71.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.329 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds