Wall clock time and date at job start Mon Mar 30 2020 06:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.05436 * 2 1 4 4 C 1.53874 * 110.03382 * 238.57935 * 2 1 3 5 5 C 1.54271 * 106.59720 * 240.71519 * 4 2 1 6 6 C 1.54887 * 104.19712 * 336.38925 * 5 4 2 7 7 C 1.54270 * 110.03092 * 121.41073 * 2 1 3 8 8 H 1.09001 * 110.60083 * 24.16404 * 7 2 1 9 9 C 1.52996 * 110.48782 * 261.57396 * 7 2 1 10 10 N 1.46498 * 109.47572 * 178.77093 * 9 7 2 11 11 C 1.34773 * 120.00616 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99744 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00033 * 180.02562 * 11 10 9 14 14 C 1.53007 * 109.46893 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46873 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.46700 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00803 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99889 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00186 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00030 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99863 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00044 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00037 * 20 18 16 24 24 H 1.08995 * 109.47589 * 298.58789 * 1 2 3 25 25 H 1.08996 * 109.46975 * 58.58885 * 1 2 3 26 26 H 1.09006 * 109.47008 * 178.58441 * 1 2 3 27 27 H 1.09003 * 110.03188 * 121.43176 * 4 2 1 28 28 H 1.08996 * 110.07385 * 0.02562 * 4 2 1 29 29 H 1.09001 * 110.48455 * 217.71264 * 5 4 2 30 30 H 1.08993 * 110.59883 * 95.12749 * 5 4 2 31 31 H 1.09001 * 110.75902 * 279.62780 * 6 5 4 32 32 H 1.09001 * 110.75764 * 156.25643 * 6 5 4 33 33 H 1.09006 * 109.47389 * 58.77255 * 9 7 2 34 34 H 1.09002 * 109.47382 * 298.77455 * 9 7 2 35 35 H 0.97004 * 119.99785 * 0.02562 * 10 9 7 36 36 H 1.08994 * 109.47450 * 59.99860 * 13 11 10 37 37 H 1.09003 * 109.47171 * 299.99242 * 13 11 10 38 38 H 1.09004 * 109.47180 * 59.99774 * 14 13 11 39 39 H 1.08997 * 109.46702 * 299.99944 * 14 13 11 40 40 H 1.09004 * 109.47139 * 60.00071 * 15 14 13 41 41 H 1.08997 * 109.47675 * 299.99671 * 15 14 13 42 42 H 0.96998 * 120.00124 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0571 -0.7536 -1.2336 5 6 2.8875 -1.9407 -0.7033 6 6 3.3137 -1.5007 0.7193 7 6 2.0584 -0.7554 1.2370 8 1 1.3152 -1.4658 1.5990 9 6 2.4391 0.2299 2.3438 10 7 2.9097 -0.5111 3.5167 11 6 3.3011 0.1539 4.6216 12 8 3.2643 1.3659 4.6448 13 6 3.7857 -0.6085 5.8279 14 6 4.1651 0.3768 6.9353 15 6 4.6565 -0.3973 8.1602 16 6 5.0307 0.5732 9.2506 17 1 4.9281 1.6357 9.0867 18 6 5.5044 0.1046 10.4578 19 7 5.8305 0.9515 11.4097 20 14 5.6827 -1.7331 10.7413 21 1 7.0391 -2.1692 10.3225 22 1 4.6614 -2.4584 9.9438 23 1 5.4895 -2.0327 12.1829 24 1 -0.3634 0.4917 0.9023 25 1 -0.3633 0.5356 -0.8770 26 1 -0.3633 -1.0274 -0.0254 27 1 2.6868 -0.0955 -1.8324 28 1 1.2235 -1.1193 -1.8331 29 1 3.7638 -2.1038 -1.3307 30 1 2.2792 -2.8439 -0.6571 31 1 4.1710 -0.8290 0.6753 32 1 3.5325 -2.3677 1.3425 33 1 1.5675 0.8253 2.6159 34 1 3.2318 0.8879 1.9877 35 1 2.9395 -1.4806 3.4981 36 1 4.6576 -1.2032 5.5558 37 1 2.9934 -1.2671 6.1839 38 1 3.2928 0.9712 7.2074 39 1 4.9572 1.0357 6.5796 40 1 5.5286 -0.9919 7.8884 41 1 3.8641 -1.0559 8.5158 42 1 6.1641 0.6219 12.2588 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594015932.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:40 Heat of formation + Delta-G solvation = -83.827241 kcal Electronic energy + Delta-G solvation = -18309.647486 eV Core-core repulsion = 15480.679498 eV Total energy + Delta-G solvation = -2828.967988 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.83421 -38.73228 -34.69669 -34.18281 -32.07010 -31.58131 -30.26097 -28.24858 -26.05857 -24.39064 -23.04400 -20.88523 -20.62054 -19.96951 -19.44933 -17.03070 -16.45359 -16.18321 -15.65063 -15.25896 -15.04562 -14.41883 -14.15643 -13.89691 -13.42622 -13.34107 -13.15206 -12.70338 -12.60390 -12.22766 -11.97456 -11.56114 -11.45112 -11.20747 -11.07505 -10.98491 -10.94330 -10.91706 -10.75775 -10.74925 -9.97110 -9.80793 -9.66985 -9.37135 -9.10088 -8.99288 -8.48740 -5.98460 -3.96057 2.92686 3.29113 3.33215 3.40211 3.43325 4.17860 4.24476 4.31397 4.49154 4.87459 4.92896 4.99802 5.07569 5.11536 5.18173 5.24294 5.25938 5.34838 5.43140 5.50952 5.58504 5.60682 5.63183 5.69919 5.75987 5.78293 5.82808 5.89301 6.01028 6.11158 6.16044 6.49844 6.60146 6.73202 6.95873 7.41155 7.49088 7.60959 7.85396 8.45983 8.62004 9.08550 9.63638 11.15306 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.046556 B = 0.003126 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.282847 B = 8953.849590 C = 9277.120191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.075 0.925 4 C -0.121 4.121 5 C -0.125 4.125 6 C -0.122 4.122 7 C -0.101 4.101 8 H 0.082 0.918 9 C 0.127 3.873 10 N -0.739 5.739 11 C 0.511 3.489 12 O -0.537 6.537 13 C -0.142 4.142 14 C -0.087 4.087 15 C -0.015 4.015 16 C -0.518 4.518 17 H 0.072 0.928 18 C 0.064 3.936 19 N -0.905 5.905 20 Si 0.882 3.118 21 H -0.278 1.278 22 H -0.266 1.266 23 H -0.289 1.289 24 H 0.056 0.944 25 H 0.054 0.946 26 H 0.055 0.945 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.065 0.935 35 H 0.398 0.602 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.011 0.989 41 H 0.015 0.985 42 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.013 -8.482 -26.276 29.045 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.094 0.906 4 C -0.158 4.158 5 C -0.162 4.162 6 C -0.159 4.159 7 C -0.120 4.120 8 H 0.100 0.900 9 C 0.003 3.997 10 N -0.393 5.393 11 C 0.298 3.702 12 O -0.412 6.412 13 C -0.182 4.182 14 C -0.125 4.125 15 C -0.052 4.052 16 C -0.556 4.556 17 H 0.091 0.909 18 C -0.137 4.137 19 N -0.544 5.544 20 Si 0.709 3.291 21 H -0.204 1.204 22 H -0.190 1.190 23 H -0.215 1.215 24 H 0.075 0.925 25 H 0.073 0.927 26 H 0.074 0.926 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.232 0.768 36 H 0.106 0.894 37 H 0.105 0.895 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.029 0.971 41 H 0.033 0.967 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.979 -7.562 -26.074 28.595 hybrid contribution 0.154 -1.417 0.238 1.445 sum -8.824 -8.980 -25.836 28.740 Atomic orbital electron populations 1.21897 0.94805 1.01757 1.01844 1.21713 0.95807 0.99663 0.93703 0.90611 1.22222 0.99431 0.97025 0.97143 1.22339 0.99521 0.97984 0.96379 1.22593 0.97390 0.99918 0.96004 1.22337 0.97856 0.97232 0.94540 0.90014 1.21338 0.99472 0.94125 0.84763 1.46113 1.68337 1.10233 1.14571 1.21163 0.76375 0.88537 0.84075 1.90693 1.53404 1.14383 1.82761 1.21865 1.02090 1.00279 0.93919 1.21262 1.01330 0.96677 0.93274 1.19608 0.95640 0.96304 0.93636 1.21178 1.42723 0.94768 0.96961 0.90937 1.25060 0.94970 0.97678 0.95989 1.69927 1.45001 1.34265 1.05244 0.86753 0.78843 0.86318 0.77176 1.20360 1.19043 1.21472 0.92484 0.92665 0.92634 0.91848 0.91710 0.91734 0.91706 0.91082 0.91458 0.91792 0.91693 0.76833 0.89441 0.89451 0.92110 0.92128 0.97116 0.96678 0.92813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 8.84 37.16 0.33 -0.61 16 2 C -0.09 -0.62 3.07 -89.50 -0.27 -0.90 16 3 H 0.08 0.57 7.84 -51.93 -0.41 0.16 16 4 C -0.12 -0.75 6.46 -25.61 -0.17 -0.91 16 5 C -0.12 -0.77 6.83 -25.07 -0.17 -0.94 16 6 C -0.12 -0.85 6.01 -24.74 -0.15 -1.00 16 7 C -0.10 -0.75 2.46 -88.96 -0.22 -0.97 16 8 H 0.08 0.58 7.86 -51.93 -0.41 0.18 16 9 C 0.13 1.32 4.96 -4.05 -0.02 1.30 16 10 N -0.74 -8.38 5.40 -60.30 -0.33 -8.71 16 11 C 0.51 8.07 7.83 -10.99 -0.09 7.99 16 12 O -0.54 -10.84 15.98 5.55 0.09 -10.75 16 13 C -0.14 -2.23 5.70 -27.88 -0.16 -2.39 16 14 C -0.09 -1.85 4.44 -26.73 -0.12 -1.97 16 15 C -0.01 -0.35 4.04 -27.88 -0.11 -0.47 16 16 C -0.52 -15.33 9.66 -34.44 -0.33 -15.66 16 17 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 18 C 0.06 1.90 5.47 -17.82 -0.10 1.81 16 19 N -0.91 -28.64 13.96 55.43 0.77 -27.87 16 20 Si 0.88 21.94 27.47 -169.99 -4.67 17.28 16 21 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 22 H -0.27 -6.27 6.54 56.52 0.37 -5.90 16 23 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 24 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.37 7.67 -51.93 -0.40 -0.03 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.56 8.02 -51.93 -0.42 0.14 16 32 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 34 H 0.06 0.75 8.10 -51.93 -0.42 0.33 16 35 H 0.40 3.38 8.32 -40.82 -0.34 3.04 16 36 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 37 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 39 H 0.06 1.36 8.10 -51.93 -0.42 0.94 16 40 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 41 H 0.01 0.36 7.20 -51.93 -0.37 -0.02 16 42 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 LS Contribution 335.83 15.07 5.06 5.06 Total: -1.00 -33.85 335.83 -8.46 -42.31 By element: Atomic # 1 Polarization: 5.22 SS G_CDS: -7.81 Total: -2.59 kcal Atomic # 6 Polarization: -13.14 SS G_CDS: -1.58 Total: -14.72 kcal Atomic # 7 Polarization: -37.03 SS G_CDS: 0.45 Total: -36.58 kcal Atomic # 8 Polarization: -10.84 SS G_CDS: 0.09 Total: -10.75 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -4.67 Total: 17.28 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.85 -8.46 -42.31 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594015932.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.519 kcal (2) G-P(sol) polarization free energy of solvation -33.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds