Wall clock time and date at job start Mon Mar 30 2020 06:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 110.05436 * 2 1 4 4 C 1.53874 * 110.03382 * 238.57935 * 2 1 3 5 5 C 1.54271 * 106.59720 * 240.71519 * 4 2 1 6 6 C 1.54887 * 104.19712 * 336.38925 * 5 4 2 7 7 C 1.54270 * 110.03092 * 121.41073 * 2 1 3 8 8 H 1.09001 * 110.60083 * 24.16404 * 7 2 1 9 9 C 1.52996 * 110.48782 * 261.57396 * 7 2 1 10 10 N 1.46498 * 109.47572 * 178.77093 * 9 7 2 11 11 C 1.34773 * 120.00616 * 180.02562 * 10 9 7 12 12 O 1.21285 * 119.99744 * 359.97438 * 11 10 9 13 13 C 1.50700 * 120.00033 * 180.02562 * 11 10 9 14 14 C 1.53007 * 109.46893 * 180.02562 * 13 11 10 15 15 C 1.52998 * 109.46873 * 179.97438 * 14 13 11 16 16 C 1.50699 * 109.46700 * 179.97438 * 15 14 13 17 17 H 1.07999 * 120.00803 * 0.02562 * 16 15 14 18 18 C 1.37881 * 119.99889 * 180.02562 * 16 15 14 19 19 N 1.31520 * 120.00186 * 180.02562 * 18 16 15 20 20 Si 1.86798 * 120.00030 * 0.02562 * 18 16 15 21 21 H 1.48506 * 109.47297 * 89.99863 * 20 18 16 22 22 H 1.48503 * 109.47261 * 330.00044 * 20 18 16 23 23 H 1.48500 * 109.47454 * 210.00037 * 20 18 16 24 24 H 1.08995 * 109.47589 * 298.58789 * 1 2 3 25 25 H 1.08996 * 109.46975 * 58.58885 * 1 2 3 26 26 H 1.09006 * 109.47008 * 178.58441 * 1 2 3 27 27 H 1.09003 * 110.03188 * 121.43176 * 4 2 1 28 28 H 1.08996 * 110.07385 * 0.02562 * 4 2 1 29 29 H 1.09001 * 110.48455 * 217.71264 * 5 4 2 30 30 H 1.08993 * 110.59883 * 95.12749 * 5 4 2 31 31 H 1.09001 * 110.75902 * 279.62780 * 6 5 4 32 32 H 1.09001 * 110.75764 * 156.25643 * 6 5 4 33 33 H 1.09006 * 109.47389 * 58.77255 * 9 7 2 34 34 H 1.09002 * 109.47382 * 298.77455 * 9 7 2 35 35 H 0.97004 * 119.99785 * 0.02562 * 10 9 7 36 36 H 1.08994 * 109.47450 * 59.99860 * 13 11 10 37 37 H 1.09003 * 109.47171 * 299.99242 * 13 11 10 38 38 H 1.09004 * 109.47180 * 59.99774 * 14 13 11 39 39 H 1.08997 * 109.46702 * 299.99944 * 14 13 11 40 40 H 1.09004 * 109.47139 * 60.00071 * 15 14 13 41 41 H 1.08997 * 109.47675 * 299.99671 * 15 14 13 42 42 H 0.96998 * 120.00124 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9038 1.0239 0.0000 4 6 2.0571 -0.7536 -1.2336 5 6 2.8875 -1.9407 -0.7033 6 6 3.3137 -1.5007 0.7193 7 6 2.0584 -0.7554 1.2370 8 1 1.3152 -1.4658 1.5990 9 6 2.4391 0.2299 2.3438 10 7 2.9097 -0.5111 3.5167 11 6 3.3011 0.1539 4.6216 12 8 3.2643 1.3659 4.6448 13 6 3.7857 -0.6085 5.8279 14 6 4.1651 0.3768 6.9353 15 6 4.6565 -0.3973 8.1602 16 6 5.0307 0.5732 9.2506 17 1 4.9281 1.6357 9.0867 18 6 5.5044 0.1046 10.4578 19 7 5.8305 0.9515 11.4097 20 14 5.6827 -1.7331 10.7413 21 1 7.0391 -2.1692 10.3225 22 1 4.6614 -2.4584 9.9438 23 1 5.4895 -2.0327 12.1829 24 1 -0.3634 0.4917 0.9023 25 1 -0.3633 0.5356 -0.8770 26 1 -0.3633 -1.0274 -0.0254 27 1 2.6868 -0.0955 -1.8324 28 1 1.2235 -1.1193 -1.8331 29 1 3.7638 -2.1038 -1.3307 30 1 2.2792 -2.8439 -0.6571 31 1 4.1710 -0.8290 0.6753 32 1 3.5325 -2.3677 1.3425 33 1 1.5675 0.8253 2.6159 34 1 3.2318 0.8879 1.9877 35 1 2.9395 -1.4806 3.4981 36 1 4.6576 -1.2032 5.5558 37 1 2.9934 -1.2671 6.1839 38 1 3.2928 0.9712 7.2074 39 1 4.9572 1.0357 6.5796 40 1 5.5286 -0.9919 7.8884 41 1 3.8641 -1.0559 8.5158 42 1 6.1641 0.6219 12.2588 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594015932.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:50:39 Heat of formation + Delta-G solvation = -105.728147 kcal Electronic energy + Delta-G solvation = -18310.597181 eV Core-core repulsion = 15480.679498 eV Total energy + Delta-G solvation = -2829.917683 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.89127 -39.54172 -36.20457 -35.57717 -34.12304 -32.09293 -31.29708 -29.79477 -26.81115 -25.67692 -24.23800 -22.16523 -21.41780 -21.33118 -20.23598 -18.93520 -17.88683 -17.12292 -16.85150 -16.29687 -16.00098 -15.77329 -15.40461 -14.80606 -14.69263 -14.57571 -14.26291 -13.85586 -13.74251 -13.50539 -13.15736 -12.82979 -12.69589 -12.46959 -11.95941 -11.88771 -11.77627 -11.71386 -11.61372 -11.57538 -11.48824 -11.47963 -11.32129 -11.25049 -10.75020 -10.74358 -10.06436 -8.27200 -6.32973 1.39143 1.42920 1.55090 1.68774 2.25627 2.39922 3.07860 3.59257 3.66596 3.74511 3.94526 4.17926 4.25811 4.30568 4.35523 4.45122 4.50330 4.56959 4.68126 4.70412 4.77402 4.82968 4.93047 4.94711 4.98762 5.01170 5.05091 5.11249 5.15823 5.27780 5.32222 5.35768 5.44595 5.53054 5.56301 5.59578 5.61292 5.68936 6.31479 6.60442 6.75936 7.30888 7.32668 8.90606 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.046556 B = 0.003126 C = 0.003017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.282847 B = 8953.849590 C = 9277.120191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.092 4.092 3 H 0.064 0.936 4 C -0.119 4.119 5 C -0.122 4.122 6 C -0.122 4.122 7 C -0.091 4.091 8 H 0.093 0.907 9 C 0.128 3.872 10 N -0.715 5.715 11 C 0.510 3.490 12 O -0.592 6.592 13 C -0.131 4.131 14 C -0.082 4.082 15 C -0.009 4.009 16 C -0.541 4.541 17 H 0.018 0.982 18 C -0.005 4.005 19 N -0.958 5.958 20 Si 0.964 3.036 21 H -0.264 1.264 22 H -0.235 1.235 23 H -0.286 1.286 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.073 0.927 31 H 0.059 0.941 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.050 0.950 35 H 0.417 0.583 36 H 0.118 0.882 37 H 0.117 0.883 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.030 0.970 41 H 0.031 0.969 42 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.544 -12.475 -27.921 32.036 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.111 4.111 3 H 0.083 0.917 4 C -0.157 4.157 5 C -0.159 4.159 6 C -0.160 4.160 7 C -0.110 4.110 8 H 0.112 0.888 9 C 0.004 3.996 10 N -0.368 5.368 11 C 0.298 3.702 12 O -0.472 6.472 13 C -0.170 4.170 14 C -0.120 4.120 15 C -0.046 4.046 16 C -0.579 4.579 17 H 0.036 0.964 18 C -0.200 4.200 19 N -0.599 5.599 20 Si 0.785 3.215 21 H -0.189 1.189 22 H -0.158 1.158 23 H -0.212 1.212 24 H 0.067 0.933 25 H 0.078 0.922 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.254 0.746 36 H 0.136 0.864 37 H 0.135 0.865 38 H 0.053 0.947 39 H 0.053 0.947 40 H 0.048 0.952 41 H 0.049 0.951 42 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.527 -11.597 -27.773 31.569 hybrid contribution 0.312 -0.029 0.730 0.794 sum -9.216 -11.626 -27.043 30.846 Atomic orbital electron populations 1.21884 0.94320 1.02248 1.01680 1.21725 0.96223 0.99202 0.93937 0.91721 1.22216 0.99742 0.97016 0.96724 1.22334 0.99768 0.98130 0.95704 1.22602 0.96516 0.99951 0.96881 1.22279 0.98513 0.96640 0.93519 0.88843 1.21386 0.98382 0.94750 0.85106 1.45888 1.66313 1.11180 1.13459 1.21203 0.76125 0.87794 0.85105 1.90685 1.56031 1.16731 1.83785 1.21722 1.04374 0.99019 0.91902 1.21048 0.99382 0.97230 0.94335 1.19546 0.96719 0.95507 0.92840 1.21577 1.43326 0.93601 0.99399 0.96352 1.26225 0.94147 1.04395 0.95261 1.70113 1.46222 1.37459 1.06083 0.85471 0.80175 0.78287 0.77529 1.18869 1.15770 1.21239 0.93349 0.92169 0.91797 0.91989 0.90872 0.91360 0.90801 0.92257 0.90316 0.93093 0.93142 0.74600 0.86384 0.86450 0.94658 0.94656 0.95190 0.95050 0.92500 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.63 8.84 71.98 0.64 -1.00 16 2 C -0.09 -1.14 3.07 -10.07 -0.03 -1.18 16 3 H 0.06 0.95 7.84 -2.39 -0.02 0.93 16 4 C -0.12 -1.24 6.46 31.32 0.20 -1.04 16 5 C -0.12 -1.18 6.83 31.67 0.22 -0.96 16 6 C -0.12 -1.40 6.01 31.89 0.19 -1.21 16 7 C -0.09 -1.17 2.46 -9.72 -0.02 -1.19 16 8 H 0.09 1.04 7.86 -2.39 -0.02 1.02 16 9 C 0.13 2.54 4.96 86.38 0.43 2.96 16 10 N -0.72 -14.71 5.40 -463.06 -2.50 -17.21 16 11 C 0.51 15.52 7.83 87.66 0.69 16.20 16 12 O -0.59 -24.51 15.98 -3.05 -0.05 -24.56 16 13 C -0.13 -3.76 5.70 29.85 0.17 -3.59 16 14 C -0.08 -3.47 4.44 30.60 0.14 -3.33 16 15 C -0.01 -0.41 4.04 29.85 0.12 -0.29 16 16 C -0.54 -32.91 9.66 25.60 0.25 -32.67 16 17 H 0.02 1.25 7.99 -2.91 -0.02 1.23 16 18 C 0.00 -0.27 5.47 84.65 0.46 0.19 16 19 N -0.96 -62.39 13.96 21.45 0.30 -62.09 16 20 Si 0.96 44.12 27.47 68.60 1.88 46.00 16 21 H -0.26 -11.47 7.11 99.48 0.71 -10.76 16 22 H -0.23 -9.54 6.54 99.48 0.65 -8.89 16 23 H -0.29 -12.94 7.11 99.48 0.71 -12.23 16 24 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 25 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 28 H 0.07 0.65 7.67 -2.39 -0.02 0.63 16 29 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 31 H 0.06 0.84 8.02 -2.39 -0.02 0.82 16 32 H 0.08 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.05 1.17 8.14 -2.38 -0.02 1.15 16 34 H 0.05 1.17 8.10 -2.39 -0.02 1.15 16 35 H 0.42 5.52 8.32 -92.71 -0.77 4.75 16 36 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 37 H 0.12 2.73 8.14 -2.39 -0.02 2.72 16 38 H 0.03 1.63 8.10 -2.39 -0.02 1.61 16 39 H 0.03 1.63 8.10 -2.39 -0.02 1.61 16 40 H 0.03 1.31 7.57 -2.39 -0.02 1.29 16 41 H 0.03 1.38 7.20 -2.39 -0.02 1.37 16 42 H 0.27 16.03 8.31 -92.71 -0.77 15.26 16 Total: -1.00 -77.44 335.83 3.22 -74.22 By element: Atomic # 1 Polarization: 10.60 SS G_CDS: 0.14 Total: 10.73 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 3.44 Total: -27.09 kcal Atomic # 7 Polarization: -77.11 SS G_CDS: -2.20 Total: -79.31 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: -0.05 Total: -24.56 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 1.88 Total: 46.00 kcal Total: -77.44 3.22 -74.22 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594015932.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.507 kcal (2) G-P(sol) polarization free energy of solvation -77.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.221 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds