Wall clock time and date at job start Mon Mar 30 2020 07:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.41424 * 2 1 4 4 C 1.54696 * 110.39173 * 237.85585 * 2 1 3 5 5 C 1.55146 * 101.67728 * 204.36494 * 4 2 1 6 6 C 1.54321 * 102.94464 * 35.33557 * 5 4 2 7 7 C 1.52999 * 109.88448 * 218.38758 * 6 5 4 8 8 C 1.53006 * 110.01343 * 97.29792 * 6 5 4 9 9 N 1.47017 * 107.27070 * 337.80774 * 6 5 4 10 10 C 1.34778 * 125.65046 * 178.90372 * 9 6 5 11 11 O 1.21279 * 120.00259 * 185.21399 * 10 9 6 12 12 C 1.50701 * 119.99898 * 5.21156 * 10 9 6 13 13 C 1.52997 * 109.47394 * 179.03722 * 12 10 9 14 14 C 1.52992 * 109.47561 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47326 * 180.02562 * 14 13 12 16 16 H 1.07992 * 119.99873 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99997 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99643 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99967 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47190 * 90.00274 * 19 17 15 21 21 H 1.48506 * 109.46942 * 210.00210 * 19 17 15 22 22 H 1.48500 * 109.47114 * 330.00120 * 19 17 15 23 23 H 1.08995 * 109.46798 * 304.43094 * 1 2 3 24 24 H 1.08995 * 109.46732 * 64.43543 * 1 2 3 25 25 H 1.08999 * 109.46939 * 184.43325 * 1 2 3 26 26 H 1.09003 * 111.10296 * 86.19486 * 4 2 1 27 27 H 1.09004 * 110.84653 * 322.42279 * 4 2 1 28 28 H 1.08997 * 110.72317 * 276.97133 * 5 4 2 29 29 H 1.09006 * 110.72213 * 153.69733 * 5 4 2 30 30 H 1.09000 * 109.47131 * 187.91843 * 7 6 5 31 31 H 1.08996 * 109.47563 * 307.91926 * 7 6 5 32 32 H 1.09003 * 109.47178 * 67.91579 * 7 6 5 33 33 H 1.09002 * 109.46759 * 294.96327 * 8 6 5 34 34 H 1.09003 * 109.46653 * 54.95790 * 8 6 5 35 35 H 1.08996 * 109.47467 * 174.96527 * 8 6 5 36 36 H 1.09003 * 109.47193 * 59.03834 * 12 10 9 37 37 H 1.08995 * 109.47210 * 299.04119 * 12 10 9 38 38 H 1.09003 * 109.46859 * 59.99908 * 13 12 10 39 39 H 1.09004 * 109.47005 * 300.00518 * 13 12 10 40 40 H 1.09003 * 109.47354 * 59.99911 * 14 13 12 41 41 H 1.09004 * 109.47139 * 300.00136 * 14 13 12 42 42 H 0.97007 * 120.00025 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0691 -0.7715 -1.2277 5 6 3.4758 -1.2022 -0.7351 6 6 3.2462 -1.4812 0.7652 7 6 4.4514 -0.9983 1.5746 8 6 3.0335 -2.9793 0.9927 9 7 2.0431 -0.7386 1.1682 10 6 1.4965 -0.7376 2.4001 11 8 0.4472 -0.1622 2.5975 12 6 2.1890 -1.4515 3.5323 13 6 1.3774 -1.2772 4.8175 14 6 2.0807 -2.0014 5.9671 15 6 1.2809 -1.8302 7.2328 16 1 0.3631 -1.2614 7.2188 17 6 1.7211 -2.3999 8.4088 18 7 2.8392 -3.0921 8.4259 19 14 0.7302 -2.1871 9.9779 20 1 -0.2505 -3.2957 10.0982 21 1 1.6450 -2.2063 11.1475 22 1 0.0083 -0.8901 9.9354 23 1 -0.3633 0.5810 0.8476 24 1 -0.3632 0.4435 -0.9270 25 1 -0.3633 -1.0246 0.0794 26 1 2.1425 -0.1206 -2.0990 27 1 1.4475 -1.6406 -1.4433 28 1 4.1959 -0.3955 -0.8716 29 1 3.8047 -2.1053 -1.2494 30 1 4.3472 -1.3227 2.6100 31 1 5.3644 -1.4181 1.1526 32 1 4.5012 0.0899 1.5380 33 1 2.1125 -3.2941 0.5019 34 1 3.8749 -3.5330 0.5760 35 1 2.9616 -3.1778 2.0620 36 1 3.1850 -1.0312 3.6718 37 1 2.2721 -2.5123 3.2961 38 1 0.3814 -1.6975 4.6780 39 1 1.2942 -0.2163 5.0536 40 1 3.0766 -1.5807 6.1064 41 1 2.1642 -3.0623 5.7312 42 1 3.1491 -3.4926 9.2533 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594043126.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:03 Heat of formation + Delta-G solvation = -54.538929 kcal Electronic energy + Delta-G solvation = -19599.948943 eV Core-core repulsion = 16772.250991 eV Total energy + Delta-G solvation = -2827.697952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.60394 -37.69760 -34.60100 -33.50297 -31.95541 -31.48609 -28.69979 -27.75560 -27.46443 -24.16274 -23.77087 -21.95302 -20.67624 -19.88752 -18.33130 -16.62544 -16.29919 -15.77808 -15.29735 -14.57496 -14.39186 -13.98357 -13.79660 -13.74041 -13.31451 -13.09899 -12.91871 -12.50395 -12.42812 -12.19009 -11.83420 -11.72378 -11.55913 -11.39084 -11.06024 -10.94645 -10.85429 -10.75496 -10.64844 -10.49924 -10.27055 -9.58794 -9.45324 -9.17147 -8.93360 -8.53153 -8.29333 -5.95185 -3.96288 2.98774 3.09139 3.36559 3.42213 3.47341 4.31513 4.34976 4.51731 4.65645 4.90595 4.96797 5.08254 5.11062 5.34863 5.40835 5.44672 5.47273 5.52810 5.55227 5.62035 5.62601 5.68482 5.78235 5.83040 5.88972 6.01023 6.01525 6.13560 6.24042 6.33694 6.44813 6.63207 6.78157 6.98795 7.20229 7.72109 7.77074 7.87088 8.05816 8.50088 8.54618 9.10724 9.67485 11.16343 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.035689 B = 0.004516 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.362189 B = 6198.542569 C = 6737.167448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.133 3.867 3 H 0.069 0.931 4 C -0.131 4.131 5 C -0.122 4.122 6 C 0.155 3.845 7 C -0.170 4.170 8 C -0.168 4.168 9 N -0.616 5.616 10 C 0.533 3.467 11 O -0.534 6.534 12 C -0.146 4.146 13 C -0.095 4.095 14 C 0.021 3.979 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.891 3.109 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.274 1.274 23 H 0.083 0.917 24 H 0.054 0.946 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.059 0.941 33 H 0.059 0.941 34 H 0.067 0.933 35 H 0.074 0.926 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.423 2.763 -21.235 21.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.030 3.970 3 H 0.087 0.913 4 C -0.169 4.169 5 C -0.160 4.160 6 C 0.070 3.930 7 C -0.227 4.227 8 C -0.226 4.226 9 N -0.353 5.353 10 C 0.324 3.676 11 O -0.411 6.411 12 C -0.185 4.185 13 C -0.133 4.133 14 C -0.016 4.016 15 C -0.555 4.555 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.719 3.281 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 H 0.102 0.898 24 H 0.073 0.927 25 H 0.073 0.927 26 H 0.098 0.902 27 H 0.093 0.907 28 H 0.095 0.905 29 H 0.100 0.900 30 H 0.093 0.907 31 H 0.085 0.915 32 H 0.079 0.921 33 H 0.078 0.922 34 H 0.086 0.914 35 H 0.092 0.908 36 H 0.110 0.890 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.072 0.928 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 2.924 2.986 -20.909 21.323 hybrid contribution -0.342 -0.008 0.842 0.909 sum 2.582 2.978 -20.067 20.451 Atomic orbital electron populations 1.22109 0.93937 1.02942 1.02562 1.21783 0.95188 0.95265 0.84788 0.91280 1.22825 0.96292 1.00598 0.97146 1.22705 0.97431 1.02260 0.93587 1.20973 0.85482 0.92089 0.94443 1.22444 0.96881 1.01747 1.01661 1.22422 1.02210 0.94234 1.03716 1.48849 1.28210 1.48814 1.09394 1.20852 0.84651 0.80006 0.82114 1.90625 1.22594 1.45128 1.82716 1.22246 1.01042 1.00945 0.94278 1.21465 0.98402 1.01291 0.92190 1.19123 0.95616 0.95242 0.91619 1.21276 1.08151 1.32429 0.93651 0.92603 1.25013 0.95113 0.95326 0.99024 1.69965 1.21508 1.35093 1.27203 0.86601 0.79936 0.78588 0.82944 1.20691 1.21273 1.19842 0.89814 0.92715 0.92706 0.90208 0.90654 0.90501 0.90032 0.90657 0.91464 0.92144 0.92209 0.91418 0.90777 0.88995 0.89043 0.92766 0.92806 0.96660 0.96677 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.97 8.43 37.16 0.31 -1.66 16 2 C 0.13 1.54 3.78 -66.53 -0.25 1.29 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 4 C -0.13 -1.09 6.50 -24.70 -0.16 -1.25 16 5 C -0.12 -0.97 6.02 -24.90 -0.15 -1.12 16 6 C 0.16 1.64 0.80 -130.84 -0.10 1.54 16 7 C -0.17 -1.76 8.09 37.16 0.30 -1.46 16 8 C -0.17 -1.75 8.27 37.16 0.31 -1.44 16 9 N -0.62 -8.33 2.74 -148.58 -0.41 -8.74 16 10 C 0.53 9.24 7.33 -10.98 -0.08 9.16 16 11 O -0.53 -11.00 13.64 5.56 0.08 -10.92 16 12 C -0.15 -2.58 3.95 -27.88 -0.11 -2.69 16 13 C -0.10 -2.13 4.44 -26.74 -0.12 -2.25 16 14 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 15 C -0.52 -15.16 9.11 -34.44 -0.31 -15.47 16 16 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 19 Si 0.89 22.23 29.54 -169.99 -5.02 17.21 16 20 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 23 H 0.08 1.29 6.24 -51.93 -0.32 0.97 16 24 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 0.64 8.05 -51.93 -0.42 0.22 16 28 H 0.08 0.55 7.85 -51.93 -0.41 0.14 16 29 H 0.08 0.53 7.79 -51.93 -0.40 0.13 16 30 H 0.07 0.89 5.10 -51.93 -0.26 0.63 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 34 H 0.07 0.56 8.09 -51.93 -0.42 0.15 16 35 H 0.07 0.89 5.02 -51.93 -0.26 0.63 16 36 H 0.09 1.51 5.64 -51.93 -0.29 1.22 16 37 H 0.09 1.51 5.38 -51.93 -0.28 1.23 16 38 H 0.05 1.26 8.09 -51.93 -0.42 0.84 16 39 H 0.05 1.25 8.11 -51.93 -0.42 0.83 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.01 0.41 8.14 -51.93 -0.42 -0.01 16 42 H 0.26 7.42 8.31 -40.82 -0.34 7.09 16 LS Contribution 322.34 15.07 4.86 4.86 Total: -1.00 -32.66 322.34 -7.62 -40.28 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -7.26 Total: -2.73 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -0.60 Total: -13.40 kcal Atomic # 7 Polarization: -35.62 SS G_CDS: 0.33 Total: -35.29 kcal Atomic # 8 Polarization: -11.00 SS G_CDS: 0.08 Total: -10.92 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.66 -7.62 -40.28 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594043126.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.258 kcal (2) G-P(sol) polarization free energy of solvation -32.660 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.918 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.281 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds