Wall clock time and date at job start Mon Mar 30 2020 07:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08998 * 110.41424 * 2 1 4 4 C 1.54696 * 110.39173 * 237.85585 * 2 1 3 5 5 C 1.55146 * 101.67728 * 204.36494 * 4 2 1 6 6 C 1.54321 * 102.94464 * 35.33557 * 5 4 2 7 7 C 1.52999 * 109.88448 * 218.38758 * 6 5 4 8 8 C 1.53006 * 110.01343 * 97.29792 * 6 5 4 9 9 N 1.47017 * 107.27070 * 337.80774 * 6 5 4 10 10 C 1.34778 * 125.65046 * 178.90372 * 9 6 5 11 11 O 1.21279 * 120.00259 * 185.21399 * 10 9 6 12 12 C 1.50701 * 119.99898 * 5.21156 * 10 9 6 13 13 C 1.52997 * 109.47394 * 179.03722 * 12 10 9 14 14 C 1.52992 * 109.47561 * 180.02562 * 13 12 10 15 15 C 1.50702 * 109.47326 * 180.02562 * 14 13 12 16 16 H 1.07992 * 119.99873 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99997 * 179.97438 * 15 14 13 18 18 N 1.31513 * 119.99643 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 119.99967 * 179.97438 * 17 15 14 20 20 H 1.48501 * 109.47190 * 90.00274 * 19 17 15 21 21 H 1.48506 * 109.46942 * 210.00210 * 19 17 15 22 22 H 1.48500 * 109.47114 * 330.00120 * 19 17 15 23 23 H 1.08995 * 109.46798 * 304.43094 * 1 2 3 24 24 H 1.08995 * 109.46732 * 64.43543 * 1 2 3 25 25 H 1.08999 * 109.46939 * 184.43325 * 1 2 3 26 26 H 1.09003 * 111.10296 * 86.19486 * 4 2 1 27 27 H 1.09004 * 110.84653 * 322.42279 * 4 2 1 28 28 H 1.08997 * 110.72317 * 276.97133 * 5 4 2 29 29 H 1.09006 * 110.72213 * 153.69733 * 5 4 2 30 30 H 1.09000 * 109.47131 * 187.91843 * 7 6 5 31 31 H 1.08996 * 109.47563 * 307.91926 * 7 6 5 32 32 H 1.09003 * 109.47178 * 67.91579 * 7 6 5 33 33 H 1.09002 * 109.46759 * 294.96327 * 8 6 5 34 34 H 1.09003 * 109.46653 * 54.95790 * 8 6 5 35 35 H 1.08996 * 109.47467 * 174.96527 * 8 6 5 36 36 H 1.09003 * 109.47193 * 59.03834 * 12 10 9 37 37 H 1.08995 * 109.47210 * 299.04119 * 12 10 9 38 38 H 1.09003 * 109.46859 * 59.99908 * 13 12 10 39 39 H 1.09004 * 109.47005 * 300.00518 * 13 12 10 40 40 H 1.09003 * 109.47354 * 59.99911 * 14 13 12 41 41 H 1.09004 * 109.47139 * 300.00136 * 14 13 12 42 42 H 0.97007 * 120.00025 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9102 1.0215 0.0000 4 6 2.0691 -0.7715 -1.2277 5 6 3.4758 -1.2022 -0.7351 6 6 3.2462 -1.4812 0.7652 7 6 4.4514 -0.9983 1.5746 8 6 3.0335 -2.9793 0.9927 9 7 2.0431 -0.7386 1.1682 10 6 1.4965 -0.7376 2.4001 11 8 0.4472 -0.1622 2.5975 12 6 2.1890 -1.4515 3.5323 13 6 1.3774 -1.2772 4.8175 14 6 2.0807 -2.0014 5.9671 15 6 1.2809 -1.8302 7.2328 16 1 0.3631 -1.2614 7.2188 17 6 1.7211 -2.3999 8.4088 18 7 2.8392 -3.0921 8.4259 19 14 0.7302 -2.1871 9.9779 20 1 -0.2505 -3.2957 10.0982 21 1 1.6450 -2.2063 11.1475 22 1 0.0083 -0.8901 9.9354 23 1 -0.3633 0.5810 0.8476 24 1 -0.3632 0.4435 -0.9270 25 1 -0.3633 -1.0246 0.0794 26 1 2.1425 -0.1206 -2.0990 27 1 1.4475 -1.6406 -1.4433 28 1 4.1959 -0.3955 -0.8716 29 1 3.8047 -2.1053 -1.2494 30 1 4.3472 -1.3227 2.6100 31 1 5.3644 -1.4181 1.1526 32 1 4.5012 0.0899 1.5380 33 1 2.1125 -3.2941 0.5019 34 1 3.8749 -3.5330 0.5760 35 1 2.9616 -3.1778 2.0620 36 1 3.1850 -1.0312 3.6718 37 1 2.2721 -2.5123 3.2961 38 1 0.3814 -1.6975 4.6780 39 1 1.2942 -0.2163 5.0536 40 1 3.0766 -1.5807 6.1064 41 1 2.1642 -3.0623 5.7312 42 1 3.1491 -3.4926 9.2533 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594043126.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:03 Heat of formation + Delta-G solvation = -73.740224 kcal Electronic energy + Delta-G solvation = -19600.781573 eV Core-core repulsion = 16772.250991 eV Total energy + Delta-G solvation = -2828.530582 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.68223 -38.92199 -36.30423 -34.89138 -33.69684 -32.65955 -29.62740 -29.58661 -28.29220 -26.04285 -24.56241 -23.41371 -21.68320 -21.51318 -19.55779 -18.43111 -17.64663 -16.95026 -16.72511 -16.46766 -15.71453 -15.11277 -14.84574 -14.74054 -14.50174 -14.42078 -14.00756 -13.88652 -13.62437 -13.47746 -13.35345 -12.95278 -12.77184 -12.60985 -12.47346 -12.37663 -12.25139 -12.20415 -11.76008 -11.54468 -11.44991 -11.42876 -11.38396 -11.18769 -10.55619 -10.50921 -9.63859 -8.21241 -6.31518 1.38632 1.40002 1.51625 1.63594 2.00121 2.40944 3.11513 3.43446 3.57073 3.91383 3.95492 4.06845 4.13301 4.14921 4.18319 4.29659 4.43238 4.62878 4.65325 4.72857 4.73917 4.83035 4.87776 4.90567 4.99772 4.99883 5.03811 5.13734 5.15892 5.19842 5.29588 5.32326 5.36582 5.43232 5.51089 5.66288 5.71761 5.83789 6.25628 6.58450 6.82963 7.23640 7.37111 8.90400 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.035689 B = 0.004516 C = 0.004155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 784.362189 B = 6198.542569 C = 6737.167448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.122 3.878 3 H 0.074 0.926 4 C -0.120 4.120 5 C -0.113 4.113 6 C 0.145 3.855 7 C -0.169 4.169 8 C -0.167 4.167 9 N -0.611 5.611 10 C 0.530 3.470 11 O -0.578 6.578 12 C -0.136 4.136 13 C -0.081 4.081 14 C 0.029 3.971 15 C -0.549 4.549 16 H 0.050 0.950 17 C 0.005 3.995 18 N -0.928 5.928 19 Si 0.962 3.038 20 H -0.271 1.271 21 H -0.276 1.276 22 H -0.269 1.269 23 H 0.047 0.953 24 H 0.082 0.918 25 H 0.040 0.960 26 H 0.107 0.893 27 H 0.075 0.925 28 H 0.091 0.909 29 H 0.105 0.895 30 H 0.054 0.946 31 H 0.093 0.907 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.094 0.906 35 H 0.052 0.948 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.039 0.961 39 H 0.038 0.962 40 H 0.000 1.000 41 H 0.000 1.000 42 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.318 2.644 -23.023 23.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.019 3.981 3 H 0.092 0.908 4 C -0.157 4.157 5 C -0.150 4.150 6 C 0.061 3.939 7 C -0.226 4.226 8 C -0.225 4.225 9 N -0.345 5.345 10 C 0.320 3.680 11 O -0.458 6.458 12 C -0.175 4.175 13 C -0.119 4.119 14 C -0.008 4.008 15 C -0.587 4.587 16 H 0.068 0.932 17 C -0.193 4.193 18 N -0.568 5.568 19 Si 0.787 3.213 20 H -0.197 1.197 21 H -0.201 1.201 22 H -0.193 1.193 23 H 0.066 0.934 24 H 0.101 0.899 25 H 0.059 0.941 26 H 0.126 0.874 27 H 0.094 0.906 28 H 0.110 0.890 29 H 0.123 0.877 30 H 0.073 0.927 31 H 0.112 0.888 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.113 0.887 35 H 0.071 0.929 36 H 0.123 0.877 37 H 0.122 0.878 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.018 0.982 41 H 0.018 0.982 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.852 2.857 -22.742 23.242 hybrid contribution -0.578 0.018 1.352 1.471 sum 3.274 2.875 -21.390 21.829 Atomic orbital electron populations 1.22018 0.94938 1.01588 1.02452 1.22068 0.94547 0.95989 0.85470 0.90846 1.22809 0.96184 1.00589 0.96152 1.22737 0.97436 1.03922 0.90948 1.21333 0.84132 0.91776 0.96701 1.22431 0.97967 1.01645 1.00594 1.22414 1.03235 0.94464 1.02376 1.48875 1.28747 1.48280 1.08612 1.20610 0.84224 0.79788 0.83335 1.90616 1.24349 1.47110 1.83697 1.22091 1.00711 1.02200 0.92542 1.21175 0.97950 0.99443 0.93368 1.18990 0.94895 0.94524 0.92422 1.21663 1.08567 1.33086 0.95340 0.93156 1.25900 0.96201 0.94647 1.02575 1.70068 1.22821 1.35482 1.28467 0.85490 0.78538 0.78838 0.78454 1.19652 1.20136 1.19341 0.93356 0.89874 0.94066 0.87449 0.90588 0.89041 0.87685 0.92731 0.88803 0.92476 0.92572 0.88718 0.92947 0.87724 0.87773 0.94244 0.94266 0.98157 0.98185 0.92608 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.76 8.43 71.98 0.61 -3.15 16 2 C 0.12 2.63 3.78 45.39 0.17 2.80 16 3 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 4 C -0.12 -1.56 6.50 31.91 0.21 -1.36 16 5 C -0.11 -1.32 6.02 31.78 0.19 -1.13 16 6 C 0.14 2.73 0.80 3.96 0.00 2.74 16 7 C -0.17 -3.16 8.09 71.98 0.58 -2.58 16 8 C -0.17 -3.16 8.27 71.98 0.60 -2.57 16 9 N -0.61 -16.09 2.74 -742.39 -2.03 -18.12 16 10 C 0.53 18.87 7.33 87.66 0.64 19.51 16 11 O -0.58 -24.93 13.64 -3.03 -0.04 -24.97 16 12 C -0.14 -4.98 3.95 29.85 0.12 -4.86 16 13 C -0.08 -3.81 4.44 30.59 0.14 -3.68 16 14 C 0.03 1.58 4.97 29.85 0.15 1.73 16 15 C -0.55 -33.08 9.11 25.60 0.23 -32.85 16 16 H 0.05 3.01 7.74 -2.91 -0.02 2.99 16 17 C 0.00 0.29 5.46 84.66 0.46 0.75 16 18 N -0.93 -57.01 13.29 21.45 0.28 -56.72 16 19 Si 0.96 45.84 29.54 68.60 2.03 47.87 16 20 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 21 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 22 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 23 H 0.05 1.55 6.24 -2.39 -0.01 1.53 16 24 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 25 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 26 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 27 H 0.08 1.03 8.05 -2.38 -0.02 1.01 16 28 H 0.09 0.87 7.85 -2.39 -0.02 0.85 16 29 H 0.10 0.83 7.79 -2.38 -0.02 0.81 16 30 H 0.05 1.25 5.10 -2.39 -0.01 1.24 16 31 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.09 1.27 8.09 -2.39 -0.02 1.25 16 35 H 0.05 1.22 5.02 -2.39 -0.01 1.21 16 36 H 0.10 3.54 5.64 -2.39 -0.01 3.52 16 37 H 0.10 3.53 5.38 -2.39 -0.01 3.51 16 38 H 0.04 1.93 8.09 -2.39 -0.02 1.91 16 39 H 0.04 1.91 8.11 -2.39 -0.02 1.89 16 40 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 41 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 42 H 0.27 15.19 8.31 -92.70 -0.77 14.42 16 Total: -1.00 -72.88 322.34 5.31 -67.57 By element: Atomic # 1 Polarization: 8.05 SS G_CDS: 0.97 Total: 9.03 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: 4.10 Total: -24.66 kcal Atomic # 7 Polarization: -73.09 SS G_CDS: -1.75 Total: -74.84 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.04 Total: -24.97 kcal Atomic # 14 Polarization: 45.84 SS G_CDS: 2.03 Total: 47.87 kcal Total: -72.88 5.31 -67.57 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594043126.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.173 kcal (2) G-P(sol) polarization free energy of solvation -72.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.740 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds