Wall clock time and date at job start Mon Mar 30 2020 07:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.87515 * 2 1 4 4 C 1.54329 * 109.87827 * 238.82423 * 2 1 3 5 5 C 1.55158 * 102.93996 * 218.38728 * 4 2 1 6 6 C 1.53004 * 111.00492 * 277.42912 * 5 4 2 7 7 C 1.52998 * 111.00047 * 153.57867 * 5 4 2 8 8 C 1.54911 * 101.58033 * 35.50611 * 5 4 2 9 9 N 1.47022 * 109.88457 * 121.01682 * 2 1 3 10 10 C 1.34774 * 125.64778 * 298.39753 * 9 2 1 11 11 O 1.21281 * 120.00107 * 359.97438 * 10 9 2 12 12 C 1.50700 * 119.99832 * 179.97438 * 10 9 2 13 13 C 1.53003 * 109.47364 * 179.97438 * 12 10 9 14 14 C 1.53001 * 109.47462 * 180.02562 * 13 12 10 15 15 C 1.50697 * 109.46947 * 180.02562 * 14 13 12 16 16 H 1.08001 * 120.00443 * 359.97438 * 15 14 13 17 17 C 1.37874 * 119.99732 * 180.02562 * 15 14 13 18 18 N 1.31520 * 120.00300 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 120.00015 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47152 * 359.97438 * 19 17 15 21 21 H 1.48510 * 109.46735 * 119.99744 * 19 17 15 22 22 H 1.48500 * 109.47214 * 239.99694 * 19 17 15 23 23 H 1.09001 * 109.47002 * 300.43387 * 1 2 3 24 24 H 1.08993 * 109.46955 * 60.43824 * 1 2 3 25 25 H 1.09000 * 109.47050 * 180.43653 * 1 2 3 26 26 H 1.08993 * 110.72303 * 336.75372 * 4 2 1 27 27 H 1.09004 * 110.71473 * 100.02989 * 4 2 1 28 28 H 1.09001 * 109.46721 * 173.65155 * 6 5 4 29 29 H 1.08999 * 109.47074 * 293.64928 * 6 5 4 30 30 H 1.08994 * 109.46612 * 53.65402 * 6 5 4 31 31 H 1.08997 * 109.47547 * 306.35333 * 7 5 4 32 32 H 1.08997 * 109.47140 * 66.35359 * 7 5 4 33 33 H 1.09003 * 109.46920 * 186.34840 * 7 5 4 34 34 H 1.08998 * 110.36172 * 204.14938 * 8 5 4 35 35 H 1.08999 * 110.45928 * 81.87868 * 8 5 4 36 36 H 1.09002 * 109.47278 * 299.99616 * 12 10 9 37 37 H 1.08999 * 109.47373 * 59.99443 * 12 10 9 38 38 H 1.09002 * 109.46948 * 300.00233 * 13 12 10 39 39 H 1.08999 * 109.46991 * 59.99624 * 13 12 10 40 40 H 1.08994 * 109.46823 * 300.00052 * 14 13 12 41 41 H 1.09000 * 109.46930 * 60.00014 * 14 13 12 42 42 H 0.96988 * 120.00220 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.9006 1.0251 0.0000 4 6 2.0548 -0.7513 -1.2417 5 6 3.2876 -1.5152 -0.6904 6 6 4.5198 -0.6092 -0.6468 7 6 3.5649 -2.7751 -1.5129 8 6 2.8145 -1.8784 0.7393 9 7 2.0301 -0.7124 1.1849 10 6 1.8075 -0.3587 2.4662 11 8 1.1436 0.6248 2.7171 12 6 2.3834 -1.1852 3.5870 13 6 1.9855 -0.5706 4.9305 14 6 2.5707 -1.4094 6.0684 15 6 2.1782 -0.8043 7.3916 16 1 1.5722 0.0893 7.4183 17 6 2.5935 -1.3910 8.5681 18 7 3.3318 -2.4790 8.5357 19 14 2.1075 -0.6407 10.2084 20 1 1.2820 0.5711 9.9732 21 1 1.3242 -1.6294 10.9922 22 1 3.3303 -0.2672 10.9635 23 1 -0.3633 0.5206 0.8861 24 1 -0.3633 0.5070 -0.8938 25 1 -0.3633 -1.0276 0.0078 26 1 1.3051 -1.4482 -1.6163 27 1 2.3529 -0.0488 -2.0200 28 1 5.3385 -1.1329 -0.1533 29 1 4.8153 -0.3487 -1.6631 30 1 4.2833 0.2992 -0.0929 31 1 2.6606 -3.3815 -1.5649 32 1 3.8706 -2.4916 -2.5200 33 1 4.3611 -3.3499 -1.0399 34 1 3.6717 -2.0319 1.3949 35 1 2.1892 -2.7710 0.7185 36 1 1.9972 -2.2025 3.5238 37 1 3.4701 -1.2033 3.5038 38 1 2.3720 0.4466 4.9934 39 1 0.8988 -0.5521 5.0139 40 1 2.1846 -2.4267 6.0056 41 1 3.6574 -1.4273 5.9847 42 1 3.6236 -2.8919 9.3633 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594047322.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:08 Heat of formation + Delta-G solvation = -68.796397 kcal Electronic energy + Delta-G solvation = -19105.395808 eV Core-core repulsion = 16277.079606 eV Total energy + Delta-G solvation = -2828.316202 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.40559 -38.03117 -34.24484 -33.79612 -32.34608 -31.46216 -27.83494 -27.61164 -27.06690 -25.86555 -23.96813 -21.74855 -20.04135 -19.41762 -18.70726 -16.78952 -16.35370 -15.94285 -15.18283 -14.67957 -14.44612 -14.33093 -14.20490 -13.48367 -13.26352 -13.13401 -12.89547 -12.30140 -12.19993 -12.15918 -12.07242 -11.94983 -11.72287 -11.50931 -11.29656 -10.94039 -10.91500 -10.78561 -10.57657 -10.52841 -10.48647 -9.63454 -9.56716 -9.21468 -8.96156 -8.53667 -8.29766 -5.95302 -3.96453 2.98148 3.11116 3.35390 3.42541 3.48673 4.13749 4.29989 4.51580 4.52348 4.93386 4.94330 5.04628 5.13074 5.32095 5.32771 5.36815 5.40835 5.43600 5.53814 5.59305 5.60998 5.67443 5.72293 5.75850 5.78597 5.85068 5.90889 6.02044 6.12600 6.22178 6.28846 6.51906 6.77145 6.97965 7.19854 7.68106 7.75005 7.87132 8.05838 8.49458 8.50818 9.10926 9.67449 11.16306 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.035170 B = 0.003968 C = 0.003705 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 795.935446 B = 7054.064310 C = 7555.158008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.134 3.866 3 H 0.071 0.929 4 C -0.119 4.119 5 C -0.080 4.080 6 C -0.137 4.137 7 C -0.135 4.135 8 C 0.109 3.891 9 N -0.622 5.622 10 C 0.529 3.471 11 O -0.536 6.536 12 C -0.133 4.133 13 C -0.095 4.095 14 C 0.020 3.980 15 C -0.516 4.516 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.891 3.109 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.284 1.284 23 H 0.071 0.929 24 H 0.060 0.940 25 H 0.054 0.946 26 H 0.077 0.923 27 H 0.079 0.921 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.058 0.942 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.054 0.946 39 H 0.054 0.946 40 H 0.015 0.985 41 H 0.015 0.985 42 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.645 -0.467 -23.253 23.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.031 3.969 3 H 0.089 0.911 4 C -0.157 4.157 5 C -0.081 4.081 6 C -0.194 4.194 7 C -0.193 4.193 8 C -0.015 4.015 9 N -0.358 5.358 10 C 0.319 3.681 11 O -0.412 6.412 12 C -0.173 4.173 13 C -0.133 4.133 14 C -0.017 4.017 15 C -0.555 4.555 16 H 0.075 0.925 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.719 3.281 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.211 1.211 23 H 0.090 0.910 24 H 0.079 0.921 25 H 0.073 0.927 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.077 0.923 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.079 0.921 34 H 0.098 0.902 35 H 0.086 0.914 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 0.346 -0.019 -22.893 22.896 hybrid contribution -0.168 0.221 0.908 0.950 sum 0.178 0.203 -21.985 21.987 Atomic orbital electron populations 1.22139 0.95007 1.02133 1.02784 1.21472 0.94467 0.96319 0.84649 0.91084 1.22853 0.96964 0.99294 0.96566 1.21761 0.95399 0.96249 0.94682 1.21759 0.96334 0.99469 1.01827 1.21721 1.01987 0.96050 0.99507 1.22405 0.95487 0.88840 0.94745 1.48699 1.53410 1.28586 1.05120 1.20951 0.79754 0.85355 0.82002 1.90660 1.39666 1.27757 1.83121 1.21829 1.01589 0.99654 0.94249 1.21452 1.00815 0.99682 0.91321 1.19133 0.95985 0.94863 0.91693 1.21317 1.31995 1.11101 0.91036 0.92528 1.25020 0.95231 0.95028 0.99247 1.69973 1.36663 1.19979 1.27174 0.86544 0.78281 0.79308 0.83955 1.19679 1.21045 1.21051 0.91033 0.92128 0.92675 0.90418 0.90278 0.92142 0.92398 0.92282 0.92279 0.92201 0.92074 0.90223 0.91351 0.89584 0.89590 0.92740 0.92735 0.96629 0.96631 0.93155 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 9.10 37.16 0.34 -1.55 16 2 C 0.13 1.54 3.08 -66.95 -0.21 1.34 16 3 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 4 C -0.12 -0.97 5.45 -24.89 -0.14 -1.10 16 5 C -0.08 -0.65 0.96 -152.36 -0.15 -0.79 16 6 C -0.14 -1.11 8.61 37.16 0.32 -0.79 16 7 C -0.14 -0.85 8.66 37.16 0.32 -0.53 16 8 C 0.11 1.11 5.62 -2.53 -0.01 1.10 16 9 N -0.62 -8.33 3.05 -163.01 -0.50 -8.83 16 10 C 0.53 9.18 7.64 -10.99 -0.08 9.09 16 11 O -0.54 -11.22 15.02 5.56 0.08 -11.13 16 12 C -0.13 -2.35 4.71 -27.88 -0.13 -2.48 16 13 C -0.09 -2.12 4.44 -26.73 -0.12 -2.24 16 14 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -15.19 9.11 -34.44 -0.31 -15.50 16 16 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.37 13.29 55.43 0.74 -26.64 16 19 Si 0.89 22.26 29.54 -169.99 -5.02 17.24 16 20 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 21 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 23 H 0.07 1.05 6.88 -51.93 -0.36 0.69 16 24 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 26 H 0.08 0.58 7.72 -51.93 -0.40 0.17 16 27 H 0.08 0.55 8.05 -51.93 -0.42 0.13 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 29 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.58 7.81 -51.93 -0.41 0.17 16 31 H 0.06 0.36 8.11 -51.93 -0.42 -0.06 16 32 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.08 0.81 7.39 -51.93 -0.38 0.42 16 35 H 0.07 0.65 8.04 -51.93 -0.42 0.24 16 36 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.09 1.39 7.85 -51.93 -0.41 0.99 16 38 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 39 H 0.05 1.27 8.10 -51.93 -0.42 0.85 16 40 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 335.53 15.07 5.06 5.06 Total: -1.00 -33.02 335.53 -7.87 -40.89 By element: Atomic # 1 Polarization: 2.76 SS G_CDS: -7.82 Total: -5.06 kcal Atomic # 6 Polarization: -11.12 SS G_CDS: -0.41 Total: -11.53 kcal Atomic # 7 Polarization: -35.70 SS G_CDS: 0.24 Total: -35.46 kcal Atomic # 8 Polarization: -11.22 SS G_CDS: 0.08 Total: -11.13 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.02 -7.87 -40.89 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594047322.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.911 kcal (2) G-P(sol) polarization free energy of solvation -33.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.885 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds