Wall clock time and date at job start Mon Mar 30 2020 07:42:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.52446 * 2 1 4 4 C 1.53046 * 109.49463 * 239.91899 * 2 1 3 5 5 C 1.53046 * 109.53579 * 178.68106 * 4 2 1 6 6 H 1.08998 * 109.49687 * 301.41384 * 5 4 2 7 7 C 1.53001 * 109.49636 * 181.31494 * 5 4 2 8 8 C 1.53193 * 109.31028 * 61.36644 * 5 4 2 9 9 N 1.46927 * 108.77663 * 305.36644 * 8 5 4 10 10 C 1.34778 * 120.62805 * 233.63128 * 9 8 5 11 11 O 1.21285 * 120.00278 * 179.97438 * 10 9 8 12 12 C 1.50698 * 120.00102 * 359.97438 * 10 9 8 13 13 C 1.52996 * 109.47245 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47194 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.47101 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00139 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99870 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99863 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99769 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47103 * 89.99895 * 19 17 15 21 21 H 1.48500 * 109.46610 * 209.99744 * 19 17 15 22 22 H 1.48496 * 109.47042 * 329.99413 * 19 17 15 23 23 C 1.46919 * 118.74179 * 53.60344 * 9 8 5 24 24 H 1.08996 * 109.47004 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46907 * 300.08092 * 1 2 3 26 26 H 1.08999 * 109.46909 * 60.07829 * 1 2 3 27 27 H 1.08993 * 109.45866 * 298.70281 * 4 2 1 28 28 H 1.09000 * 109.45949 * 58.66617 * 4 2 1 29 29 H 1.08998 * 109.46509 * 60.00272 * 7 5 4 30 30 H 1.08997 * 109.47078 * 179.97438 * 7 5 4 31 31 H 1.08994 * 109.46924 * 300.00572 * 7 5 4 32 32 H 1.09000 * 109.58615 * 185.57833 * 8 5 4 33 33 H 1.08998 * 109.58446 * 65.14816 * 8 5 4 34 34 H 1.09000 * 109.46874 * 299.99970 * 12 10 9 35 35 H 1.08997 * 109.47596 * 59.99862 * 12 10 9 36 36 H 1.09000 * 109.47218 * 299.99831 * 13 12 10 37 37 H 1.09004 * 109.47212 * 60.00094 * 13 12 10 38 38 H 1.09000 * 109.47225 * 300.00225 * 14 13 12 39 39 H 1.08997 * 109.47296 * 60.00148 * 14 13 12 40 40 H 0.97003 * 119.99845 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.59216 * 186.60571 * 23 9 8 42 42 H 1.09006 * 109.58250 * 66.18466 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0274 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 3.5709 -0.6950 -1.2661 6 1 3.9159 0.3389 -1.2542 7 6 4.0798 -1.3894 -2.5309 8 6 4.1053 -1.4267 -0.0309 9 7 3.5046 -0.8292 1.1695 10 6 4.2812 -0.3857 2.1778 11 8 3.7733 0.1061 3.1633 12 6 5.7807 -0.5008 2.0808 13 6 6.4192 0.0726 3.3474 14 6 7.9415 -0.0449 3.2491 15 6 8.5705 0.5205 4.4965 16 1 7.9468 0.9229 5.2811 17 6 9.9422 0.5240 4.6361 18 7 10.7016 0.0335 3.6810 19 14 10.7218 1.2241 6.1826 20 1 10.8704 0.1465 7.1934 21 1 12.0581 1.7823 5.8541 22 1 9.8567 2.3000 6.7295 23 6 2.0414 -0.7238 1.2495 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5151 0.8893 26 1 -0.3633 0.5126 -0.8907 27 1 1.6967 -1.7572 -1.2353 28 1 1.6582 -0.2245 -2.1389 29 1 3.6969 -0.8702 -3.4095 30 1 5.1695 -1.3688 -2.5433 31 1 3.7354 -2.4235 -2.5412 32 1 5.1896 -1.3246 0.0136 33 1 3.8375 -2.4818 -0.0869 34 1 6.0585 -1.5495 1.9761 35 1 6.1325 0.0566 1.2127 36 1 6.1413 1.1214 3.4516 37 1 6.0675 -0.4845 4.2158 38 1 8.2191 -1.0938 3.1451 39 1 8.2936 0.5119 2.3808 40 1 11.6667 0.0363 3.7790 41 1 1.7638 -0.1579 2.1388 42 1 1.6053 -1.7216 1.2980 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594214755.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:06 Heat of formation + Delta-G solvation = -76.488413 kcal Electronic energy + Delta-G solvation = -18971.560575 eV Core-core repulsion = 16142.910822 eV Total energy + Delta-G solvation = -2828.649753 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.21837 -37.88860 -34.32856 -33.86173 -33.52548 -31.94582 -28.32112 -26.95686 -26.73793 -25.47242 -23.44741 -21.05921 -20.66561 -20.01057 -18.75198 -16.81744 -16.27011 -15.76103 -15.53512 -15.06027 -14.98468 -14.39871 -13.91784 -13.68047 -13.26968 -12.95006 -12.90853 -12.49429 -12.34609 -12.28055 -12.12696 -11.83981 -11.63010 -11.33104 -11.07894 -11.00557 -10.78325 -10.77241 -10.60263 -10.50683 -10.45279 -9.63988 -9.58194 -9.22113 -8.98299 -8.55723 -8.29683 -5.95466 -3.96636 2.93449 3.10478 3.36516 3.42141 3.47268 4.37817 4.51006 4.54248 4.57389 4.70772 4.96927 5.05211 5.15544 5.27102 5.32602 5.36603 5.40625 5.44198 5.45800 5.57326 5.61321 5.67833 5.73831 5.74212 5.81343 5.85862 5.93605 5.96811 6.02207 6.21030 6.29139 6.58881 6.76252 6.97153 7.19454 7.53422 7.73754 7.86698 8.05460 8.46473 8.49905 9.10422 9.67172 11.16073 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.035528 B = 0.003883 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.919213 B = 7209.405402 C = 7828.757964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.108 4.108 3 H 0.074 0.926 4 C -0.108 4.108 5 C -0.110 4.110 6 H 0.076 0.924 7 C -0.145 4.145 8 C 0.111 3.889 9 N -0.622 5.622 10 C 0.515 3.485 11 O -0.539 6.539 12 C -0.137 4.137 13 C -0.095 4.095 14 C 0.021 3.979 15 C -0.517 4.517 16 H 0.056 0.944 17 C 0.055 3.945 18 N -0.898 5.898 19 Si 0.892 3.108 20 H -0.281 1.281 21 H -0.287 1.287 22 H -0.273 1.273 23 C 0.115 3.885 24 H 0.055 0.945 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.063 0.937 28 H 0.063 0.937 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.056 0.944 32 H 0.091 0.909 33 H 0.066 0.934 34 H 0.087 0.913 35 H 0.087 0.913 36 H 0.054 0.946 37 H 0.054 0.946 38 H 0.015 0.985 39 H 0.015 0.985 40 H 0.259 0.741 41 H 0.090 0.910 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.987 -3.946 -13.848 23.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.127 4.127 3 H 0.092 0.908 4 C -0.145 4.145 5 C -0.129 4.129 6 H 0.094 0.906 7 C -0.203 4.203 8 C -0.012 4.012 9 N -0.356 5.356 10 C 0.305 3.695 11 O -0.415 6.415 12 C -0.177 4.177 13 C -0.133 4.133 14 C -0.016 4.016 15 C -0.556 4.556 16 H 0.074 0.926 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.720 3.280 20 H -0.207 1.207 21 H -0.213 1.213 22 H -0.198 1.198 23 C -0.008 4.008 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.082 0.918 28 H 0.082 0.918 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.110 0.890 33 H 0.085 0.915 34 H 0.105 0.895 35 H 0.105 0.895 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.034 0.966 39 H 0.034 0.966 40 H 0.069 0.931 41 H 0.109 0.891 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -18.064 -3.708 -13.331 22.755 hybrid contribution 0.525 0.296 0.637 0.877 sum -17.539 -3.412 -12.694 21.918 Atomic orbital electron populations 1.21754 0.94525 1.01918 1.01981 1.21519 0.95798 1.00294 0.95137 0.90797 1.21649 0.94750 1.00700 0.97434 1.21534 0.95854 1.00714 0.94784 0.90584 1.21767 1.01498 1.00456 0.96596 1.21816 0.99111 0.96668 0.83607 1.48215 1.06380 1.62266 1.18748 1.21274 0.90320 0.76233 0.81662 1.90657 1.75785 1.44072 1.31009 1.21860 0.89543 1.03341 1.02931 1.21456 0.98228 1.00017 0.93619 1.19130 0.88282 0.97073 0.97157 1.21282 0.91495 1.39425 1.03355 0.92586 1.25019 0.97448 0.95579 0.96468 1.69964 1.04543 1.46466 1.32803 0.86593 0.78574 0.79368 0.83496 1.20682 1.21275 1.19833 1.21581 0.80122 1.00314 0.98743 0.92564 0.92374 0.92455 0.91816 0.91781 0.92423 0.92083 0.92510 0.89037 0.91530 0.89462 0.89468 0.92744 0.92731 0.96626 0.96629 0.93097 0.89133 0.92021 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.20 37.16 0.34 -0.74 16 2 C -0.11 -1.00 2.87 -90.50 -0.26 -1.26 16 3 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 4 C -0.11 -0.86 4.45 -26.68 -0.12 -0.98 16 5 C -0.11 -0.95 2.87 -90.50 -0.26 -1.21 16 6 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 7 C -0.15 -1.03 9.20 37.16 0.34 -0.69 16 8 C 0.11 1.14 5.63 -3.71 -0.02 1.12 16 9 N -0.62 -8.24 2.97 -172.77 -0.51 -8.75 16 10 C 0.52 8.86 7.70 -10.99 -0.08 8.78 16 11 O -0.54 -11.29 15.40 5.55 0.09 -11.20 16 12 C -0.14 -2.38 4.05 -27.89 -0.11 -2.49 16 13 C -0.10 -2.12 4.44 -26.73 -0.12 -2.24 16 14 C 0.02 0.54 4.97 -27.88 -0.14 0.40 16 15 C -0.52 -15.17 9.11 -34.44 -0.31 -15.49 16 16 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.29 13.29 55.43 0.74 -26.56 16 19 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 20 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 22 H -0.27 -6.72 7.11 56.52 0.40 -6.32 16 23 C 0.12 1.34 5.72 -3.72 -0.02 1.32 16 24 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.94 5.93 -51.93 -0.31 0.63 16 33 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.09 1.38 7.94 -51.93 -0.41 0.97 16 35 H 0.09 1.38 7.69 -51.93 -0.40 0.98 16 36 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 37 H 0.05 1.26 8.10 -51.93 -0.42 0.84 16 38 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 41 H 0.09 1.23 7.01 -51.93 -0.36 0.87 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 332.98 15.07 5.02 5.02 Total: -1.00 -32.85 332.98 -8.34 -41.20 By element: Atomic # 1 Polarization: 2.83 SS G_CDS: -7.79 Total: -4.95 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -0.86 Total: -11.95 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.22 Total: -35.31 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.20 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.85 -8.34 -41.20 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594214755.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.292 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.197 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds