Wall clock time and date at job start Mon Mar 30 2020 07:42:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09004 * 109.52446 * 2 1 4 4 C 1.53046 * 109.49463 * 239.91899 * 2 1 3 5 5 C 1.53046 * 109.53579 * 178.68106 * 4 2 1 6 6 H 1.08998 * 109.49687 * 301.41384 * 5 4 2 7 7 C 1.53001 * 109.49636 * 181.31494 * 5 4 2 8 8 C 1.53193 * 109.31028 * 61.36644 * 5 4 2 9 9 N 1.46927 * 108.77663 * 305.36644 * 8 5 4 10 10 C 1.34778 * 120.62805 * 233.63128 * 9 8 5 11 11 O 1.21285 * 120.00278 * 179.97438 * 10 9 8 12 12 C 1.50698 * 120.00102 * 359.97438 * 10 9 8 13 13 C 1.52996 * 109.47245 * 179.97438 * 12 10 9 14 14 C 1.53002 * 109.47194 * 179.97438 * 13 12 10 15 15 C 1.50703 * 109.47101 * 179.97438 * 14 13 12 16 16 H 1.08002 * 120.00139 * 0.02562 * 15 14 13 17 17 C 1.37880 * 119.99870 * 180.02562 * 15 14 13 18 18 N 1.31511 * 119.99863 * 359.97438 * 17 15 14 19 19 Si 1.86805 * 119.99769 * 180.02562 * 17 15 14 20 20 H 1.48492 * 109.47103 * 89.99895 * 19 17 15 21 21 H 1.48500 * 109.46610 * 209.99744 * 19 17 15 22 22 H 1.48496 * 109.47042 * 329.99413 * 19 17 15 23 23 C 1.46919 * 118.74179 * 53.60344 * 9 8 5 24 24 H 1.08996 * 109.47004 * 180.02562 * 1 2 3 25 25 H 1.09002 * 109.46907 * 300.08092 * 1 2 3 26 26 H 1.08999 * 109.46909 * 60.07829 * 1 2 3 27 27 H 1.08993 * 109.45866 * 298.70281 * 4 2 1 28 28 H 1.09000 * 109.45949 * 58.66617 * 4 2 1 29 29 H 1.08998 * 109.46509 * 60.00272 * 7 5 4 30 30 H 1.08997 * 109.47078 * 179.97438 * 7 5 4 31 31 H 1.08994 * 109.46924 * 300.00572 * 7 5 4 32 32 H 1.09000 * 109.58615 * 185.57833 * 8 5 4 33 33 H 1.08998 * 109.58446 * 65.14816 * 8 5 4 34 34 H 1.09000 * 109.46874 * 299.99970 * 12 10 9 35 35 H 1.08997 * 109.47596 * 59.99862 * 12 10 9 36 36 H 1.09000 * 109.47218 * 299.99831 * 13 12 10 37 37 H 1.09004 * 109.47212 * 60.00094 * 13 12 10 38 38 H 1.09000 * 109.47225 * 300.00225 * 14 13 12 39 39 H 1.08997 * 109.47296 * 60.00148 * 14 13 12 40 40 H 0.97003 * 119.99845 * 179.97438 * 18 17 15 41 41 H 1.09002 * 109.59216 * 186.60571 * 23 9 8 42 42 H 1.09006 * 109.58250 * 66.18466 * 23 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8944 1.0274 0.0000 4 6 2.0408 -0.7231 -1.2484 5 6 3.5709 -0.6950 -1.2661 6 1 3.9159 0.3389 -1.2542 7 6 4.0798 -1.3894 -2.5309 8 6 4.1053 -1.4267 -0.0309 9 7 3.5046 -0.8292 1.1695 10 6 4.2812 -0.3857 2.1778 11 8 3.7733 0.1061 3.1633 12 6 5.7807 -0.5008 2.0808 13 6 6.4192 0.0726 3.3474 14 6 7.9415 -0.0449 3.2491 15 6 8.5705 0.5205 4.4965 16 1 7.9468 0.9229 5.2811 17 6 9.9422 0.5240 4.6361 18 7 10.7016 0.0335 3.6810 19 14 10.7218 1.2241 6.1826 20 1 10.8704 0.1465 7.1934 21 1 12.0581 1.7823 5.8541 22 1 9.8567 2.3000 6.7295 23 6 2.0414 -0.7238 1.2495 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5151 0.8893 26 1 -0.3633 0.5126 -0.8907 27 1 1.6967 -1.7572 -1.2353 28 1 1.6582 -0.2245 -2.1389 29 1 3.6969 -0.8702 -3.4095 30 1 5.1695 -1.3688 -2.5433 31 1 3.7354 -2.4235 -2.5412 32 1 5.1896 -1.3246 0.0136 33 1 3.8375 -2.4818 -0.0869 34 1 6.0585 -1.5495 1.9761 35 1 6.1325 0.0566 1.2127 36 1 6.1413 1.1214 3.4516 37 1 6.0675 -0.4845 4.2158 38 1 8.2191 -1.0938 3.1451 39 1 8.2936 0.5119 2.3808 40 1 11.6667 0.0363 3.7790 41 1 1.7638 -0.1579 2.1388 42 1 1.6053 -1.7216 1.2980 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594214755.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:42:04 Heat of formation + Delta-G solvation = -95.263190 kcal Electronic energy + Delta-G solvation = -18972.374710 eV Core-core repulsion = 16142.910822 eV Total energy + Delta-G solvation = -2829.463888 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 5.01 seconds Orbital eigenvalues (eV) -41.34767 -38.98525 -36.17829 -34.91368 -34.42962 -33.91090 -30.03138 -27.74574 -27.56759 -26.72416 -25.18999 -22.31472 -21.73205 -21.16386 -19.95243 -18.50892 -17.95217 -16.95848 -16.84493 -16.47851 -15.92035 -15.74373 -15.26602 -14.90392 -14.32108 -14.12811 -13.98052 -13.78061 -13.68057 -13.25905 -13.10428 -12.95420 -12.86288 -12.64230 -12.53994 -12.44594 -12.33150 -11.80040 -11.78514 -11.58473 -11.50618 -11.46335 -11.29673 -11.17636 -10.69640 -10.54822 -9.63049 -8.20660 -6.30713 1.39302 1.40564 1.52170 1.59178 2.00114 2.41514 3.12180 3.54635 3.72886 3.85075 3.93333 3.95923 4.15123 4.21145 4.29870 4.37070 4.53271 4.60154 4.67165 4.71380 4.79236 4.83702 4.85516 4.91498 4.93918 5.04914 5.08671 5.08853 5.16979 5.21271 5.29819 5.31613 5.40680 5.52126 5.53945 5.60767 5.73592 5.85211 6.25972 6.36818 6.84103 7.16219 7.37857 8.90913 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.035528 B = 0.003883 C = 0.003576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.919213 B = 7209.405402 C = 7828.757964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.103 4.103 3 H 0.055 0.945 4 C -0.103 4.103 5 C -0.106 4.106 6 H 0.061 0.939 7 C -0.141 4.141 8 C 0.102 3.898 9 N -0.612 5.612 10 C 0.513 3.487 11 O -0.587 6.587 12 C -0.127 4.127 13 C -0.082 4.082 14 C 0.028 3.972 15 C -0.549 4.549 16 H 0.050 0.950 17 C 0.004 3.996 18 N -0.928 5.928 19 Si 0.962 3.038 20 H -0.271 1.271 21 H -0.277 1.277 22 H -0.269 1.269 23 C 0.111 3.889 24 H 0.068 0.932 25 H 0.050 0.950 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.078 0.922 29 H 0.065 0.935 30 H 0.057 0.943 31 H 0.067 0.933 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.106 0.894 35 H 0.104 0.896 36 H 0.038 0.962 37 H 0.040 0.960 38 H 0.002 0.998 39 H 0.001 0.999 40 H 0.265 0.735 41 H 0.064 0.936 42 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.688 -4.670 -15.081 24.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.122 4.122 3 H 0.073 0.927 4 C -0.140 4.140 5 C -0.126 4.126 6 H 0.079 0.921 7 C -0.198 4.198 8 C -0.019 4.019 9 N -0.344 5.344 10 C 0.303 3.697 11 O -0.468 6.468 12 C -0.167 4.167 13 C -0.120 4.120 14 C -0.010 4.010 15 C -0.587 4.587 16 H 0.068 0.932 17 C -0.194 4.194 18 N -0.568 5.568 19 Si 0.787 3.213 20 H -0.197 1.197 21 H -0.202 1.202 22 H -0.193 1.193 23 C -0.012 4.012 24 H 0.087 0.913 25 H 0.069 0.931 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.084 0.916 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.106 0.894 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.057 0.943 37 H 0.058 0.942 38 H 0.020 0.980 39 H 0.019 0.981 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -18.785 -4.455 -14.617 24.215 hybrid contribution 0.725 0.493 0.965 1.304 sum -18.060 -3.963 -13.652 22.984 Atomic orbital electron populations 1.21727 0.92902 1.02819 1.02304 1.21469 0.97080 0.99047 0.94629 0.92665 1.21642 0.94002 1.01408 0.96994 1.21502 0.96487 0.99843 0.94728 0.92069 1.21731 1.01352 1.00981 0.95772 1.22127 0.99135 0.97839 0.82841 1.48246 1.07047 1.60640 1.18489 1.21128 0.90329 0.76293 0.81986 1.90638 1.76398 1.46633 1.33094 1.21681 0.89887 1.04338 1.00761 1.21171 0.95813 0.99232 0.95788 1.19006 0.90766 0.95577 0.95608 1.21683 0.92335 1.40265 1.04410 0.93157 1.25903 0.97898 0.95668 0.99936 1.70063 1.05065 1.47044 1.34673 0.85493 0.77731 0.78824 0.79294 1.19660 1.20192 1.19346 1.21753 0.79027 1.01314 0.99059 0.91342 0.93052 0.91200 0.90457 0.90385 0.91567 0.92345 0.91370 0.89132 0.89432 0.87556 0.87795 0.94300 0.94152 0.97974 0.98055 0.92617 0.91714 0.90124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.81 9.20 71.98 0.66 -1.15 16 2 C -0.10 -1.76 2.87 -10.71 -0.03 -1.79 16 3 H 0.05 1.15 8.14 -2.38 -0.02 1.13 16 4 C -0.10 -1.35 4.45 30.63 0.14 -1.21 16 5 C -0.11 -1.61 2.87 -10.71 -0.03 -1.64 16 6 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 7 C -0.14 -1.59 9.20 71.98 0.66 -0.92 16 8 C 0.10 1.89 5.63 86.36 0.49 2.37 16 9 N -0.61 -15.72 2.97 -818.92 -2.43 -18.16 16 10 C 0.51 17.79 7.70 87.66 0.67 18.47 16 11 O -0.59 -25.46 15.40 -3.05 -0.05 -25.51 16 12 C -0.13 -4.41 4.05 29.85 0.12 -4.29 16 13 C -0.08 -3.76 4.44 30.59 0.14 -3.62 16 14 C 0.03 1.49 4.97 29.85 0.15 1.64 16 15 C -0.55 -32.86 9.11 25.60 0.23 -32.63 16 16 H 0.05 2.99 7.74 -2.91 -0.02 2.96 16 17 C 0.00 0.24 5.46 84.66 0.46 0.70 16 18 N -0.93 -56.72 13.29 21.45 0.28 -56.44 16 19 Si 0.96 45.65 29.54 68.60 2.03 47.67 16 20 H -0.27 -12.40 7.11 99.48 0.71 -11.70 16 21 H -0.28 -12.60 7.11 99.48 0.71 -11.90 16 22 H -0.27 -12.46 7.11 99.48 0.71 -11.76 16 23 C 0.11 2.48 5.72 86.36 0.49 2.98 16 24 H 0.07 0.74 8.14 -2.39 -0.02 0.72 16 25 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 26 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 27 H 0.08 0.85 8.14 -2.39 -0.02 0.83 16 28 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 30 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.63 8.14 -2.39 -0.02 0.61 16 32 H 0.09 1.70 5.93 -2.39 -0.01 1.68 16 33 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 34 H 0.11 3.28 7.94 -2.39 -0.02 3.26 16 35 H 0.10 3.25 7.69 -2.39 -0.02 3.23 16 36 H 0.04 1.87 8.10 -2.39 -0.02 1.85 16 37 H 0.04 1.93 8.10 -2.39 -0.02 1.91 16 38 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 39 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 40 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.06 1.81 7.01 -2.39 -0.02 1.79 16 42 H 0.08 1.52 8.14 -2.38 -0.02 1.50 16 Total: -1.00 -71.86 332.98 4.93 -66.93 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: 0.95 Total: 6.61 kcal Atomic # 6 Polarization: -25.26 SS G_CDS: 4.15 Total: -21.10 kcal Atomic # 7 Polarization: -72.44 SS G_CDS: -2.15 Total: -74.59 kcal Atomic # 8 Polarization: -25.46 SS G_CDS: -0.05 Total: -25.51 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.67 kcal Total: -71.86 4.93 -66.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594214755.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.337 kcal (2) G-P(sol) polarization free energy of solvation -71.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.927 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.01 seconds