Wall clock time and date at job start Mon Mar 30 2020 07:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46226 * 2 1 4 4 C 1.53048 * 109.45916 * 240.04686 * 2 1 3 5 5 C 1.53196 * 109.30962 * 178.61273 * 4 2 1 6 6 N 1.46918 * 108.77816 * 54.63631 * 5 4 2 7 7 C 1.34777 * 120.63472 * 126.41170 * 6 5 4 8 8 O 1.21278 * 120.00339 * 179.97438 * 7 6 5 9 9 C 1.50703 * 119.99784 * 359.97438 * 7 6 5 10 10 C 1.53000 * 109.47181 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47200 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47164 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00127 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99928 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99983 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99853 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47367 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46748 * 119.99971 * 16 14 12 19 19 H 1.48495 * 109.46817 * 239.99677 * 16 14 12 20 20 C 1.46930 * 118.73785 * 306.38980 * 6 5 4 21 21 C 1.53038 * 109.46406 * 119.97629 * 2 1 3 22 22 H 1.08993 * 109.49916 * 301.34315 * 21 2 1 23 23 C 1.53002 * 109.49351 * 61.43523 * 21 2 1 24 24 H 1.09002 * 109.47153 * 300.02071 * 1 2 3 25 25 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47261 * 60.02243 * 1 2 3 27 27 H 1.08997 * 109.49665 * 298.56540 * 4 2 1 28 28 H 1.08999 * 109.49809 * 58.66352 * 4 2 1 29 29 H 1.08997 * 109.58906 * 294.84511 * 5 4 2 30 30 H 1.09001 * 109.58607 * 174.42373 * 5 4 2 31 31 H 1.09009 * 109.46654 * 300.00187 * 9 7 6 32 32 H 1.08998 * 109.46979 * 59.99995 * 9 7 6 33 33 H 1.09004 * 109.46475 * 299.99811 * 10 9 7 34 34 H 1.08998 * 109.47557 * 59.99872 * 10 9 7 35 35 H 1.08996 * 109.46918 * 299.99854 * 11 10 9 36 36 H 1.09007 * 109.46851 * 59.99560 * 11 10 9 37 37 H 0.96998 * 119.99927 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.58853 * 293.81635 * 20 6 5 39 39 H 1.09001 * 109.58713 * 173.39130 * 20 6 5 40 40 H 1.08999 * 109.47391 * 60.00500 * 23 21 2 41 41 H 1.09005 * 109.47394 * 180.02562 * 23 21 2 42 42 H 1.09003 * 109.47283 * 299.99828 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0398 -0.7205 -1.2503 5 6 3.5714 -0.6883 -1.2644 6 7 4.0679 -1.2487 -0.0004 7 6 4.9622 -2.2571 -0.0006 8 8 5.3647 -2.7108 1.0496 9 6 5.4619 -2.8208 -1.3058 10 6 6.4595 -3.9467 -1.0265 11 6 6.9673 -4.5185 -2.3516 12 6 7.9504 -5.6270 -2.0765 13 1 8.1895 -5.8964 -1.0583 14 6 8.5455 -6.2966 -3.1247 15 7 8.2547 -5.9682 -4.3645 16 14 9.7636 -7.6712 -2.7836 17 1 9.9162 -7.8447 -1.3167 18 1 9.2643 -8.9349 -3.3828 19 1 11.0789 -7.3262 -3.3803 20 6 3.5714 -0.6888 1.2640 21 6 2.0399 -0.7209 1.2499 22 1 1.6573 -0.2212 2.1397 23 6 1.5598 -2.1736 1.2330 24 1 -0.3633 0.5142 0.8898 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5135 -0.8902 27 1 1.6978 -1.7554 -1.2387 28 1 1.6572 -0.2203 -2.1399 29 1 3.9143 0.3412 -1.3674 30 1 3.9417 -1.2840 -2.0988 31 1 4.6211 -3.2143 -1.8772 32 1 5.9529 -2.0333 -1.8774 33 1 7.3003 -3.5535 -0.4549 34 1 5.9682 -4.7341 -0.4550 35 1 6.1268 -4.9115 -2.9236 36 1 7.4588 -3.7308 -2.9227 37 1 8.6731 -6.4396 -5.1018 38 1 3.9143 0.3407 1.3674 39 1 3.9417 -1.2849 2.0980 40 1 1.9441 -2.6730 0.3437 41 1 1.9228 -2.6867 2.1236 42 1 0.4701 -2.1960 1.2201 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594333863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:28 Heat of formation + Delta-G solvation = -70.535777 kcal Electronic energy + Delta-G solvation = -19186.011589 eV Core-core repulsion = 16357.619962 eV Total energy + Delta-G solvation = -2828.391627 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 5.14 seconds Orbital eigenvalues (eV) -40.37045 -38.07290 -34.25872 -34.16582 -32.31515 -31.73809 -28.81049 -28.19188 -26.60536 -23.99831 -23.37116 -22.66170 -20.51416 -19.41869 -18.33795 -16.89863 -16.21517 -15.69136 -15.50665 -15.24686 -14.60244 -14.39376 -14.24407 -13.66985 -13.41442 -13.26679 -12.86011 -12.48970 -12.21194 -12.16307 -11.85659 -11.83599 -11.51829 -11.31612 -11.25455 -10.90074 -10.79806 -10.60650 -10.49860 -10.48063 -10.41320 -9.64266 -9.56752 -9.21619 -8.97012 -8.53790 -8.30213 -5.95747 -3.96828 2.95760 3.12960 3.35138 3.42334 3.48412 4.44559 4.47202 4.51398 4.56247 4.84966 4.97911 5.04716 5.16009 5.20459 5.34621 5.40426 5.40825 5.52933 5.59841 5.62394 5.68861 5.72350 5.74053 5.75711 5.77595 5.79299 5.98259 6.05447 6.06104 6.28934 6.30789 6.62111 6.76354 6.97318 7.19552 7.55230 7.73895 7.86596 8.05325 8.48189 8.50042 9.10529 9.67069 11.15828 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.042682 B = 0.003813 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.860908 B = 7341.267630 C = 7602.709754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 H 0.070 0.930 4 C -0.134 4.134 5 C 0.106 3.894 6 N -0.618 5.618 7 C 0.515 3.485 8 O -0.539 6.539 9 C -0.137 4.137 10 C -0.095 4.095 11 C 0.020 3.980 12 C -0.516 4.516 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.114 3.886 21 C -0.101 4.101 22 H 0.077 0.923 23 C -0.147 4.147 24 H 0.053 0.947 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.259 0.741 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.053 0.947 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.230 14.611 6.905 22.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.088 0.912 4 C -0.172 4.172 5 C -0.017 4.017 6 N -0.354 5.354 7 C 0.305 3.695 8 O -0.415 6.415 9 C -0.177 4.177 10 C -0.133 4.133 11 C -0.017 4.017 12 C -0.555 4.555 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.210 1.210 19 H -0.211 1.211 20 C -0.009 4.009 21 C -0.120 4.120 22 H 0.095 0.905 23 C -0.204 4.204 24 H 0.072 0.928 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.072 0.928 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.954 14.306 7.298 22.637 hybrid contribution 0.577 -0.629 -0.037 0.854 sum -15.376 13.677 7.260 21.822 Atomic orbital electron populations 1.21878 0.95142 1.02045 1.01461 1.21121 0.95640 0.99134 0.94654 0.91205 1.22053 0.95317 1.01907 0.97938 1.21734 0.94041 0.99351 0.86551 1.48174 1.44197 1.36323 1.06660 1.21244 0.77594 0.78152 0.92495 1.90655 1.57339 1.59419 1.34097 1.21861 1.01269 1.00738 0.93830 1.21450 0.96310 0.94843 1.00681 1.19133 0.95913 0.95613 0.91014 1.21319 1.24164 1.17240 0.92746 0.92535 1.25021 0.96984 0.97406 0.95137 1.69971 1.43832 1.41794 0.98170 0.86542 0.81056 0.82031 0.78450 1.19680 1.21049 1.21057 1.21567 0.92975 0.98610 0.87724 1.21512 0.95284 0.97097 0.98097 0.90457 1.21879 1.00531 0.95556 1.02483 0.92820 0.92304 0.92764 0.90887 0.90801 0.91599 0.89048 0.89521 0.89494 0.92752 0.92764 0.96642 0.96633 0.93155 0.92084 0.89069 0.92123 0.92769 0.92638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.87 37.16 0.33 -0.68 16 2 C -0.09 -0.68 2.45 -90.58 -0.22 -0.90 16 3 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 4 C -0.13 -1.12 5.02 -26.61 -0.13 -1.25 16 5 C 0.11 1.05 6.34 -3.71 -0.02 1.03 16 6 N -0.62 -7.95 2.41 -172.77 -0.42 -8.37 16 7 C 0.52 8.70 7.70 -10.98 -0.08 8.62 16 8 O -0.54 -11.13 15.39 5.56 0.09 -11.05 16 9 C -0.14 -2.36 4.05 -27.88 -0.11 -2.47 16 10 C -0.09 -2.10 4.44 -26.73 -0.12 -2.22 16 11 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 12 C -0.52 -15.13 9.11 -34.44 -0.31 -15.44 16 13 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 14 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 16 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 17 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 H -0.28 -6.98 7.11 56.52 0.40 -6.57 16 20 C 0.11 1.29 5.83 -3.71 -0.02 1.27 16 21 C -0.10 -0.91 2.72 -90.50 -0.25 -1.16 16 22 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 23 C -0.15 -1.50 8.38 37.16 0.31 -1.19 16 24 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.06 0.42 6.46 -51.93 -0.34 0.09 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.07 0.69 6.34 -51.93 -0.33 0.36 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.90 5.93 -51.93 -0.31 0.60 16 31 H 0.09 1.36 7.69 -51.92 -0.40 0.96 16 32 H 0.09 1.37 7.94 -51.93 -0.41 0.95 16 33 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 34 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.02 0.42 8.14 -51.92 -0.42 0.00 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.22 7.01 -51.93 -0.36 0.86 16 40 H 0.06 0.72 5.97 -51.93 -0.31 0.41 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.48 6.47 -51.93 -0.34 0.15 16 LS Contribution 324.78 15.07 4.89 4.89 Total: -1.00 -32.77 324.78 -8.00 -40.76 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -7.40 Total: -4.41 kcal Atomic # 6 Polarization: -11.62 SS G_CDS: -0.87 Total: -12.49 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: 0.32 Total: -34.89 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.77 -8.00 -40.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594333863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.773 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.14 seconds