Wall clock time and date at job start Mon Mar 30 2020 07:47:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.46226 * 2 1 4 4 C 1.53048 * 109.45916 * 240.04686 * 2 1 3 5 5 C 1.53196 * 109.30962 * 178.61273 * 4 2 1 6 6 N 1.46918 * 108.77816 * 54.63631 * 5 4 2 7 7 C 1.34777 * 120.63472 * 126.41170 * 6 5 4 8 8 O 1.21278 * 120.00339 * 179.97438 * 7 6 5 9 9 C 1.50703 * 119.99784 * 359.97438 * 7 6 5 10 10 C 1.53000 * 109.47181 * 180.02562 * 9 7 6 11 11 C 1.52999 * 109.47200 * 180.02562 * 10 9 7 12 12 C 1.50695 * 109.47164 * 179.97438 * 11 10 9 13 13 H 1.08002 * 120.00127 * 359.97438 * 12 11 10 14 14 C 1.37881 * 119.99928 * 180.02562 * 12 11 10 15 15 N 1.31509 * 119.99983 * 359.97438 * 14 12 11 16 16 Si 1.86803 * 119.99853 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47367 * 359.97438 * 16 14 12 18 18 H 1.48499 * 109.46748 * 119.99971 * 16 14 12 19 19 H 1.48495 * 109.46817 * 239.99677 * 16 14 12 20 20 C 1.46930 * 118.73785 * 306.38980 * 6 5 4 21 21 C 1.53038 * 109.46406 * 119.97629 * 2 1 3 22 22 H 1.08993 * 109.49916 * 301.34315 * 21 2 1 23 23 C 1.53002 * 109.49351 * 61.43523 * 21 2 1 24 24 H 1.09002 * 109.47153 * 300.02071 * 1 2 3 25 25 H 1.09001 * 109.46832 * 180.02562 * 1 2 3 26 26 H 1.09004 * 109.47261 * 60.02243 * 1 2 3 27 27 H 1.08997 * 109.49665 * 298.56540 * 4 2 1 28 28 H 1.08999 * 109.49809 * 58.66352 * 4 2 1 29 29 H 1.08997 * 109.58906 * 294.84511 * 5 4 2 30 30 H 1.09001 * 109.58607 * 174.42373 * 5 4 2 31 31 H 1.09009 * 109.46654 * 300.00187 * 9 7 6 32 32 H 1.08998 * 109.46979 * 59.99995 * 9 7 6 33 33 H 1.09004 * 109.46475 * 299.99811 * 10 9 7 34 34 H 1.08998 * 109.47557 * 59.99872 * 10 9 7 35 35 H 1.08996 * 109.46918 * 299.99854 * 11 10 9 36 36 H 1.09007 * 109.46851 * 59.99560 * 11 10 9 37 37 H 0.96998 * 119.99927 * 180.02562 * 15 14 12 38 38 H 1.08998 * 109.58853 * 293.81635 * 20 6 5 39 39 H 1.09001 * 109.58713 * 173.39130 * 20 6 5 40 40 H 1.08999 * 109.47391 * 60.00500 * 23 21 2 41 41 H 1.09005 * 109.47394 * 180.02562 * 23 21 2 42 42 H 1.09003 * 109.47283 * 299.99828 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0278 0.0000 4 6 2.0398 -0.7205 -1.2503 5 6 3.5714 -0.6883 -1.2644 6 7 4.0679 -1.2487 -0.0004 7 6 4.9622 -2.2571 -0.0006 8 8 5.3647 -2.7108 1.0496 9 6 5.4619 -2.8208 -1.3058 10 6 6.4595 -3.9467 -1.0265 11 6 6.9673 -4.5185 -2.3516 12 6 7.9504 -5.6270 -2.0765 13 1 8.1895 -5.8964 -1.0583 14 6 8.5455 -6.2966 -3.1247 15 7 8.2547 -5.9682 -4.3645 16 14 9.7636 -7.6712 -2.7836 17 1 9.9162 -7.8447 -1.3167 18 1 9.2643 -8.9349 -3.3828 19 1 11.0789 -7.3262 -3.3803 20 6 3.5714 -0.6888 1.2640 21 6 2.0399 -0.7209 1.2499 22 1 1.6573 -0.2212 2.1397 23 6 1.5598 -2.1736 1.2330 24 1 -0.3633 0.5142 0.8898 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5135 -0.8902 27 1 1.6978 -1.7554 -1.2387 28 1 1.6572 -0.2203 -2.1399 29 1 3.9143 0.3412 -1.3674 30 1 3.9417 -1.2840 -2.0988 31 1 4.6211 -3.2143 -1.8772 32 1 5.9529 -2.0333 -1.8774 33 1 7.3003 -3.5535 -0.4549 34 1 5.9682 -4.7341 -0.4550 35 1 6.1268 -4.9115 -2.9236 36 1 7.4588 -3.7308 -2.9227 37 1 8.6731 -6.4396 -5.1018 38 1 3.9143 0.3407 1.3674 39 1 3.9417 -1.2849 2.0980 40 1 1.9441 -2.6730 0.3437 41 1 1.9228 -2.6867 2.1236 42 1 0.4701 -2.1960 1.2201 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594333863.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:25 Heat of formation + Delta-G solvation = -89.130974 kcal Electronic energy + Delta-G solvation = -19186.817937 eV Core-core repulsion = 16357.619962 eV Total energy + Delta-G solvation = -2829.197975 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 3.01 seconds Orbital eigenvalues (eV) -41.43333 -39.16551 -36.15832 -35.23094 -34.04847 -32.82477 -30.07660 -29.35097 -27.80740 -25.70101 -24.26129 -23.60825 -22.22483 -20.64565 -19.23102 -18.52637 -17.97550 -16.91567 -16.73079 -16.44190 -15.97942 -15.74306 -15.05426 -14.76313 -14.59230 -14.40648 -14.20686 -13.88601 -13.70350 -13.23753 -13.10918 -12.84937 -12.70019 -12.60930 -12.49208 -12.45788 -12.25716 -11.95506 -11.65205 -11.58129 -11.46655 -11.31243 -11.18328 -11.13561 -10.64117 -10.55168 -9.58351 -8.20805 -6.30727 1.39096 1.39263 1.53325 1.64083 2.05196 2.41484 3.12033 3.57751 3.77816 3.85963 3.89546 4.11049 4.17233 4.22376 4.25472 4.43154 4.51048 4.63236 4.67862 4.76539 4.80611 4.86197 4.89115 4.94143 4.96667 5.04517 5.07758 5.09346 5.14445 5.17709 5.22467 5.34607 5.43449 5.52716 5.60191 5.67777 5.74017 5.85541 6.26519 6.41340 6.84359 7.21116 7.37918 8.90940 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.042682 B = 0.003813 C = 0.003682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.860908 B = 7341.267630 C = 7602.709754 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 H 0.083 0.917 4 C -0.131 4.131 5 C 0.098 3.902 6 N -0.607 5.607 7 C 0.513 3.487 8 O -0.587 6.587 9 C -0.128 4.128 10 C -0.081 4.081 11 C 0.027 3.973 12 C -0.548 4.548 13 H 0.050 0.950 14 C 0.004 3.996 15 N -0.928 5.928 16 Si 0.962 3.038 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.274 1.274 20 C 0.109 3.891 21 C -0.095 4.095 22 H 0.095 0.905 23 C -0.146 4.146 24 H 0.060 0.940 25 H 0.052 0.948 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.095 0.905 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.103 0.897 32 H 0.106 0.894 33 H 0.039 0.961 34 H 0.038 0.962 35 H 0.001 0.999 36 H 0.002 0.998 37 H 0.265 0.735 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.036 0.964 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.240 15.888 6.601 24.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 H 0.101 0.899 4 C -0.169 4.169 5 C -0.024 4.024 6 N -0.340 5.340 7 C 0.303 3.697 8 O -0.468 6.468 9 C -0.167 4.167 10 C -0.119 4.119 11 C -0.010 4.010 12 C -0.586 4.586 13 H 0.068 0.932 14 C -0.194 4.194 15 N -0.568 5.568 16 Si 0.787 3.213 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.200 1.200 20 C -0.013 4.013 21 C -0.114 4.114 22 H 0.113 0.887 23 C -0.203 4.203 24 H 0.079 0.921 25 H 0.071 0.929 26 H 0.082 0.918 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.124 0.876 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.019 0.981 36 H 0.020 0.980 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.056 0.944 42 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -17.004 15.624 6.975 24.122 hybrid contribution 0.846 -0.979 0.034 1.295 sum -16.158 14.645 7.009 22.906 Atomic orbital electron populations 1.21846 0.94100 1.01926 1.02356 1.21117 0.96425 0.99342 0.93257 0.89887 1.22048 0.93895 1.01627 0.99318 1.22044 0.95298 1.00248 0.84826 1.48185 1.42495 1.34712 1.08629 1.21069 0.78271 0.78960 0.91389 1.90636 1.59490 1.61365 1.35310 1.21681 1.00696 0.99597 0.94739 1.21161 0.96892 0.95992 0.97900 1.19008 0.94798 0.94631 0.92531 1.21708 1.25463 1.18671 0.92731 0.93202 1.25902 0.98787 0.99909 0.94835 1.70067 1.44784 1.42952 0.99044 0.85443 0.78639 0.78798 0.78450 1.19327 1.19979 1.19978 1.21732 0.94671 0.98847 0.86041 1.21505 0.93344 0.96601 0.99911 0.88681 1.21861 1.01520 0.96184 1.00718 0.92069 0.92925 0.91796 0.92161 0.88609 0.89398 0.89109 0.87845 0.87615 0.94242 0.94354 0.98062 0.97999 0.92626 0.90083 0.91707 0.94002 0.94433 0.90980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.87 71.98 0.64 -0.87 16 2 C -0.08 -1.04 2.45 -10.77 -0.03 -1.06 16 3 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 4 C -0.13 -1.83 5.02 30.68 0.15 -1.68 16 5 C 0.10 1.69 6.34 86.37 0.55 2.24 16 6 N -0.61 -15.01 2.41 -818.91 -1.97 -16.99 16 7 C 0.51 17.48 7.70 87.66 0.67 18.16 16 8 O -0.59 -25.17 15.39 -3.02 -0.05 -25.22 16 9 C -0.13 -4.38 4.05 29.85 0.12 -4.26 16 10 C -0.08 -3.72 4.44 30.59 0.14 -3.58 16 11 C 0.03 1.48 4.97 29.85 0.15 1.63 16 12 C -0.55 -32.78 9.11 25.60 0.23 -32.55 16 13 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 14 C 0.00 0.22 5.46 84.66 0.46 0.68 16 15 N -0.93 -56.67 13.29 21.45 0.28 -56.38 16 16 Si 0.96 45.67 29.54 68.60 2.03 47.70 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 20 C 0.11 2.36 5.83 86.36 0.50 2.87 16 21 C -0.09 -1.54 2.72 -10.72 -0.03 -1.57 16 22 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 23 C -0.15 -2.88 8.38 71.98 0.60 -2.28 16 24 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 25 H 0.05 0.62 6.46 -2.39 -0.02 0.61 16 26 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 27 H 0.06 1.03 6.34 -2.39 -0.02 1.01 16 28 H 0.10 0.97 8.14 -2.39 -0.02 0.96 16 29 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 30 H 0.09 1.60 5.93 -2.39 -0.01 1.59 16 31 H 0.10 3.20 7.69 -2.38 -0.02 3.18 16 32 H 0.11 3.23 7.94 -2.39 -0.02 3.21 16 33 H 0.04 1.89 8.10 -2.38 -0.02 1.87 16 34 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 35 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 36 H 0.00 0.09 8.14 -2.38 -0.02 0.07 16 37 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 1.77 7.01 -2.39 -0.02 1.76 16 40 H 0.04 0.98 5.97 -2.39 -0.01 0.96 16 41 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.07 1.16 6.47 -2.39 -0.02 1.14 16 Total: -1.00 -71.95 324.78 5.43 -66.53 By element: Atomic # 1 Polarization: 5.68 SS G_CDS: 0.97 Total: 6.64 kcal Atomic # 6 Polarization: -26.45 SS G_CDS: 4.17 Total: -22.28 kcal Atomic # 7 Polarization: -71.68 SS G_CDS: -1.69 Total: -73.37 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.05 Total: -25.22 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.95 5.43 -66.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594333863.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.603 kcal (2) G-P(sol) polarization free energy of solvation -71.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.01 seconds