Wall clock time and date at job start Mon Mar 30 2020 07:47:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.45700 * 2 1 4 4 C 1.53070 * 109.45504 * 119.82005 * 2 1 3 5 5 C 1.53195 * 109.29524 * 181.24323 * 4 2 1 6 6 N 1.46919 * 108.89273 * 305.57804 * 5 4 2 7 7 C 1.34784 * 120.63188 * 233.51696 * 6 5 4 8 8 O 1.21280 * 119.99866 * 180.02562 * 7 6 5 9 9 C 1.50702 * 119.99526 * 359.97438 * 7 6 5 10 10 C 1.53006 * 109.46708 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.46961 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47279 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00017 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00121 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00448 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99957 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47154 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46960 * 120.00193 * 16 14 12 19 19 H 1.48500 * 109.47430 * 239.99976 * 16 14 12 20 20 C 1.46928 * 118.73982 * 53.53793 * 6 5 4 21 21 C 1.53039 * 109.46010 * 240.03230 * 2 1 3 22 22 H 1.09002 * 109.49876 * 58.66085 * 21 2 1 23 23 C 1.52998 * 109.49648 * 298.56575 * 21 2 1 24 24 H 1.09000 * 109.46983 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47301 * 299.96937 * 1 2 3 26 26 H 1.09005 * 109.47321 * 59.96742 * 1 2 3 27 27 H 1.08997 * 109.38860 * 61.36510 * 4 2 1 28 28 H 1.09003 * 109.62046 * 301.25852 * 4 2 1 29 29 H 1.09002 * 109.58720 * 185.71834 * 5 4 2 30 30 H 1.08996 * 109.58651 * 65.43731 * 5 4 2 31 31 H 1.08996 * 109.47104 * 299.99859 * 9 7 6 32 32 H 1.08994 * 109.47167 * 60.00297 * 9 7 6 33 33 H 1.08997 * 109.46808 * 300.00166 * 10 9 7 34 34 H 1.08997 * 109.46847 * 59.99778 * 10 9 7 35 35 H 1.08998 * 109.47657 * 300.00374 * 11 10 9 36 36 H 1.09005 * 109.47296 * 59.99975 * 11 10 9 37 37 H 0.96997 * 120.00683 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.58787 * 66.18123 * 20 6 5 39 39 H 1.09007 * 109.58600 * 186.46436 * 20 6 5 40 40 H 1.08997 * 109.47256 * 300.15605 * 23 21 2 41 41 H 1.09000 * 109.47485 * 60.15968 * 23 21 2 42 42 H 1.09005 * 109.47116 * 180.16184 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7177 1.2522 5 6 3.5714 -0.6884 1.2642 6 7 4.0679 -1.2487 0.0000 7 6 4.9621 -2.2572 0.0000 8 8 5.3646 -2.7107 -1.0503 9 6 5.4627 -2.8203 1.3052 10 6 6.4611 -3.9455 1.0256 11 6 6.9698 -4.5167 2.3505 12 6 7.9526 -5.6254 2.0753 13 1 8.1910 -5.8953 1.0571 14 6 8.5484 -6.2945 3.1232 15 7 8.2586 -5.9657 4.3632 16 14 9.7673 -7.6683 2.7820 17 1 9.9196 -7.8418 1.3151 18 1 11.0826 -7.3225 3.3783 19 1 9.2691 -8.9324 3.3813 20 6 3.5713 -0.6885 -1.2643 21 6 2.0398 -0.7208 -1.2501 22 1 1.6572 -0.2208 -2.1398 23 6 1.5597 -2.1734 -1.2335 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5133 0.8902 26 1 -0.3634 0.5144 -0.8897 27 1 1.6957 -1.7519 1.2418 28 1 1.6593 -0.2161 2.1420 29 1 3.9418 -1.2843 2.0984 30 1 3.9164 0.3402 1.3684 31 1 5.9541 -2.0325 1.8761 32 1 4.6224 -3.2135 1.8773 33 1 5.9700 -4.7333 0.4544 34 1 7.3013 -3.5518 0.4536 35 1 7.4609 -3.7287 2.9214 36 1 6.1297 -4.9103 2.9230 37 1 8.6774 -6.4366 5.1005 38 1 3.9142 0.3409 -1.3675 39 1 3.9437 -1.2831 -2.0986 40 1 1.9417 -2.6722 -0.3428 41 1 0.4700 -2.1958 -1.2233 42 1 1.9255 -2.6871 -2.1225 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594333865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:42 Heat of formation + Delta-G solvation = -70.625646 kcal Electronic energy + Delta-G solvation = -19185.086916 eV Core-core repulsion = 16356.691392 eV Total energy + Delta-G solvation = -2828.395524 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 3.32 seconds Orbital eigenvalues (eV) -40.36653 -38.07078 -34.25860 -34.16569 -32.31651 -31.73918 -28.81049 -28.19224 -26.60549 -23.99868 -23.37127 -22.66289 -20.51485 -19.41984 -18.33617 -16.89871 -16.21556 -15.69046 -15.50787 -15.24834 -14.60253 -14.39360 -14.24110 -13.66905 -13.41598 -13.26644 -12.86088 -12.48909 -12.21178 -12.16406 -11.85590 -11.83788 -11.51623 -11.31632 -11.25585 -10.90149 -10.79804 -10.60689 -10.49867 -10.47911 -10.41495 -9.64281 -9.56803 -9.21697 -8.97005 -8.53785 -8.30199 -5.95709 -3.96851 2.95710 3.12926 3.35125 3.42339 3.48417 4.44660 4.46948 4.51384 4.56271 4.84868 4.97852 5.04619 5.15954 5.20585 5.34598 5.40426 5.40699 5.52911 5.59973 5.62293 5.69060 5.72403 5.74105 5.75641 5.77525 5.79336 5.98204 6.05428 6.06148 6.28919 6.30766 6.62100 6.76329 6.97326 7.19540 7.55195 7.73900 7.86570 8.05324 8.48140 8.50004 9.10522 9.67081 11.15852 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.042682 B = 0.003813 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.858634 B = 7341.998515 C = 7603.783297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 H 0.069 0.931 4 C -0.134 4.134 5 C 0.106 3.894 6 N -0.618 5.618 7 C 0.515 3.485 8 O -0.539 6.539 9 C -0.137 4.137 10 C -0.095 4.095 11 C 0.020 3.980 12 C -0.516 4.516 13 H 0.056 0.944 14 C 0.055 3.945 15 N -0.898 5.898 16 Si 0.891 3.109 17 H -0.272 1.272 18 H -0.284 1.284 19 H -0.284 1.284 20 C 0.114 3.886 21 C -0.100 4.100 22 H 0.077 0.923 23 C -0.147 4.147 24 H 0.058 0.942 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.054 0.946 34 H 0.054 0.946 35 H 0.015 0.985 36 H 0.015 0.985 37 H 0.259 0.741 38 H 0.061 0.939 39 H 0.091 0.909 40 H 0.060 0.940 41 H 0.055 0.945 42 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.241 14.606 -6.903 22.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.105 4.105 3 H 0.088 0.912 4 C -0.172 4.172 5 C -0.017 4.017 6 N -0.353 5.353 7 C 0.305 3.695 8 O -0.415 6.415 9 C -0.177 4.177 10 C -0.133 4.133 11 C -0.017 4.017 12 C -0.555 4.555 13 H 0.075 0.925 14 C -0.145 4.145 15 N -0.538 5.538 16 Si 0.719 3.281 17 H -0.197 1.197 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.009 4.009 21 C -0.120 4.120 22 H 0.096 0.904 23 C -0.204 4.204 24 H 0.077 0.923 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.091 0.909 28 H 0.092 0.908 29 H 0.109 0.891 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.072 0.928 34 H 0.072 0.928 35 H 0.034 0.966 36 H 0.034 0.966 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.109 0.891 40 H 0.079 0.921 41 H 0.074 0.926 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.963 14.301 -7.296 22.640 hybrid contribution 0.579 -0.629 0.039 0.855 sum -15.384 13.673 -7.257 21.824 Atomic orbital electron populations 1.21877 0.95140 1.02045 1.01463 1.21122 0.95639 0.99148 0.94637 0.91225 1.22054 0.95303 1.01924 0.97919 1.21725 0.94054 0.99364 0.86543 1.48172 1.44202 1.36319 1.06654 1.21246 0.77595 0.78146 0.92494 1.90655 1.57353 1.59418 1.34082 1.21859 1.01256 1.00752 0.93830 1.21449 0.96299 0.94854 1.00679 1.19133 0.95919 0.95610 0.91016 1.21317 1.24171 1.17226 0.92748 0.92534 1.25019 0.96984 0.97406 0.95136 1.69970 1.43840 1.41796 0.98170 0.86543 0.81064 0.82022 0.78450 1.19682 1.21058 1.21051 1.21566 0.92972 0.98616 0.87728 1.21508 0.95271 0.97098 0.98087 0.90449 1.21876 1.00526 0.95553 1.02489 0.92304 0.92765 0.92818 0.90911 0.90769 0.89065 0.91617 0.89496 0.89517 0.92764 0.92750 0.96628 0.96645 0.93152 0.92102 0.89067 0.92131 0.92637 0.92765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.87 37.16 0.33 -0.68 16 2 C -0.09 -0.68 2.45 -90.57 -0.22 -0.90 16 3 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 4 C -0.13 -1.12 5.03 -26.59 -0.13 -1.25 16 5 C 0.11 1.05 6.34 -3.71 -0.02 1.03 16 6 N -0.62 -7.95 2.41 -172.77 -0.42 -8.37 16 7 C 0.52 8.70 7.70 -10.98 -0.08 8.62 16 8 O -0.54 -11.13 15.39 5.56 0.09 -11.05 16 9 C -0.14 -2.36 4.05 -27.88 -0.11 -2.47 16 10 C -0.09 -2.10 4.44 -26.73 -0.12 -2.22 16 11 C 0.02 0.53 4.97 -27.89 -0.14 0.39 16 12 C -0.52 -15.12 9.11 -34.44 -0.31 -15.44 16 13 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 14 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 15 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 16 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 17 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 18 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 19 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 20 C 0.11 1.29 5.83 -3.71 -0.02 1.27 16 21 C -0.10 -0.91 2.72 -90.50 -0.25 -1.16 16 22 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 23 C -0.15 -1.50 8.38 37.16 0.31 -1.19 16 24 H 0.06 0.42 6.47 -51.93 -0.34 0.09 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.07 0.68 6.35 -51.93 -0.33 0.35 16 28 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.09 0.90 5.93 -51.93 -0.31 0.60 16 30 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.09 1.37 7.94 -51.93 -0.41 0.95 16 32 H 0.09 1.36 7.69 -51.93 -0.40 0.96 16 33 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 34 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 35 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 36 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.09 1.22 7.00 -51.92 -0.36 0.86 16 40 H 0.06 0.71 5.98 -51.93 -0.31 0.40 16 41 H 0.05 0.48 6.47 -51.93 -0.34 0.15 16 42 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 324.81 15.07 4.89 4.89 Total: -1.00 -32.77 324.81 -8.00 -40.76 By element: Atomic # 1 Polarization: 2.99 SS G_CDS: -7.41 Total: -4.41 kcal Atomic # 6 Polarization: -11.61 SS G_CDS: -0.87 Total: -12.48 kcal Atomic # 7 Polarization: -35.22 SS G_CDS: 0.32 Total: -34.90 kcal Atomic # 8 Polarization: -11.13 SS G_CDS: 0.09 Total: -11.05 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -32.77 -8.00 -40.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594333865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.862 kcal (2) G-P(sol) polarization free energy of solvation -32.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.764 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.32 seconds