Wall clock time and date at job start Mon Mar 30 2020 07:47:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09008 * 109.45700 * 2 1 4 4 C 1.53070 * 109.45504 * 119.82005 * 2 1 3 5 5 C 1.53195 * 109.29524 * 181.24323 * 4 2 1 6 6 N 1.46919 * 108.89273 * 305.57804 * 5 4 2 7 7 C 1.34784 * 120.63188 * 233.51696 * 6 5 4 8 8 O 1.21280 * 119.99866 * 180.02562 * 7 6 5 9 9 C 1.50702 * 119.99526 * 359.97438 * 7 6 5 10 10 C 1.53006 * 109.46708 * 180.02562 * 9 7 6 11 11 C 1.52991 * 109.46961 * 179.97438 * 10 9 7 12 12 C 1.50699 * 109.47279 * 179.97438 * 11 10 9 13 13 H 1.07997 * 120.00017 * 0.02562 * 12 11 10 14 14 C 1.37872 * 120.00121 * 179.97438 * 12 11 10 15 15 N 1.31514 * 120.00448 * 0.02562 * 14 12 11 16 16 Si 1.86800 * 119.99957 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47154 * 0.02562 * 16 14 12 18 18 H 1.48503 * 109.46960 * 120.00193 * 16 14 12 19 19 H 1.48500 * 109.47430 * 239.99976 * 16 14 12 20 20 C 1.46928 * 118.73982 * 53.53793 * 6 5 4 21 21 C 1.53039 * 109.46010 * 240.03230 * 2 1 3 22 22 H 1.09002 * 109.49876 * 58.66085 * 21 2 1 23 23 C 1.52998 * 109.49648 * 298.56575 * 21 2 1 24 24 H 1.09000 * 109.46983 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47301 * 299.96937 * 1 2 3 26 26 H 1.09005 * 109.47321 * 59.96742 * 1 2 3 27 27 H 1.08997 * 109.38860 * 61.36510 * 4 2 1 28 28 H 1.09003 * 109.62046 * 301.25852 * 4 2 1 29 29 H 1.09002 * 109.58720 * 185.71834 * 5 4 2 30 30 H 1.08996 * 109.58651 * 65.43731 * 5 4 2 31 31 H 1.08996 * 109.47104 * 299.99859 * 9 7 6 32 32 H 1.08994 * 109.47167 * 60.00297 * 9 7 6 33 33 H 1.08997 * 109.46808 * 300.00166 * 10 9 7 34 34 H 1.08997 * 109.46847 * 59.99778 * 10 9 7 35 35 H 1.08998 * 109.47657 * 300.00374 * 11 10 9 36 36 H 1.09005 * 109.47296 * 59.99975 * 11 10 9 37 37 H 0.96997 * 120.00683 * 179.97438 * 15 14 12 38 38 H 1.08998 * 109.58787 * 66.18123 * 20 6 5 39 39 H 1.09007 * 109.58600 * 186.46436 * 20 6 5 40 40 H 1.08997 * 109.47256 * 300.15605 * 23 21 2 41 41 H 1.09000 * 109.47485 * 60.15968 * 23 21 2 42 42 H 1.09005 * 109.47116 * 180.16184 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7177 1.2522 5 6 3.5714 -0.6884 1.2642 6 7 4.0679 -1.2487 0.0000 7 6 4.9621 -2.2572 0.0000 8 8 5.3646 -2.7107 -1.0503 9 6 5.4627 -2.8203 1.3052 10 6 6.4611 -3.9455 1.0256 11 6 6.9698 -4.5167 2.3505 12 6 7.9526 -5.6254 2.0753 13 1 8.1910 -5.8953 1.0571 14 6 8.5484 -6.2945 3.1232 15 7 8.2586 -5.9657 4.3632 16 14 9.7673 -7.6683 2.7820 17 1 9.9196 -7.8418 1.3151 18 1 11.0826 -7.3225 3.3783 19 1 9.2691 -8.9324 3.3813 20 6 3.5713 -0.6885 -1.2643 21 6 2.0398 -0.7208 -1.2501 22 1 1.6572 -0.2208 -2.1398 23 6 1.5597 -2.1734 -1.2335 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3634 0.5133 0.8902 26 1 -0.3634 0.5144 -0.8897 27 1 1.6957 -1.7519 1.2418 28 1 1.6593 -0.2161 2.1420 29 1 3.9418 -1.2843 2.0984 30 1 3.9164 0.3402 1.3684 31 1 5.9541 -2.0325 1.8761 32 1 4.6224 -3.2135 1.8773 33 1 5.9700 -4.7333 0.4544 34 1 7.3013 -3.5518 0.4536 35 1 7.4609 -3.7287 2.9214 36 1 6.1297 -4.9103 2.9230 37 1 8.6774 -6.4366 5.1005 38 1 3.9142 0.3409 -1.3675 39 1 3.9437 -1.2831 -2.0986 40 1 1.9417 -2.6722 -0.3428 41 1 0.4700 -2.1958 -1.2233 42 1 1.9255 -2.6871 -2.1225 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594333865.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:37 Heat of formation + Delta-G solvation = -89.222280 kcal Electronic energy + Delta-G solvation = -19185.893327 eV Core-core repulsion = 16356.691392 eV Total energy + Delta-G solvation = -2829.201935 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 2.55 seconds Orbital eigenvalues (eV) -41.43033 -39.16274 -36.15887 -35.23018 -34.04857 -32.82705 -30.07707 -29.35086 -27.80780 -25.70174 -24.26129 -23.60920 -22.22559 -20.64706 -19.22943 -18.52645 -17.97584 -16.91550 -16.73189 -16.44203 -15.98054 -15.74280 -15.05174 -14.76410 -14.59261 -14.40490 -14.20744 -13.88708 -13.70331 -13.23625 -13.10952 -12.85067 -12.70093 -12.60958 -12.49253 -12.45778 -12.25603 -11.95595 -11.65302 -11.58156 -11.46737 -11.31255 -11.18176 -11.13695 -10.64164 -10.55154 -9.58370 -8.20769 -6.30750 1.39074 1.39266 1.53318 1.64012 2.05136 2.41483 3.12035 3.57764 3.77683 3.85875 3.89537 4.10998 4.17183 4.22386 4.25294 4.43072 4.51095 4.63225 4.67907 4.76472 4.80632 4.86263 4.89114 4.94125 4.96683 5.04529 5.07794 5.09423 5.14396 5.17695 5.22469 5.34638 5.43463 5.52723 5.60132 5.67733 5.73997 5.85545 6.26484 6.41287 6.84349 7.21050 7.37930 8.90964 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.042682 B = 0.003813 C = 0.003681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.858634 B = 7341.998515 C = 7603.783297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.083 4.083 3 H 0.083 0.917 4 C -0.131 4.131 5 C 0.097 3.903 6 N -0.607 5.607 7 C 0.513 3.487 8 O -0.587 6.587 9 C -0.128 4.128 10 C -0.081 4.081 11 C 0.027 3.973 12 C -0.548 4.548 13 H 0.050 0.950 14 C 0.004 3.996 15 N -0.928 5.928 16 Si 0.962 3.038 17 H -0.269 1.269 18 H -0.274 1.274 19 H -0.274 1.274 20 C 0.109 3.891 21 C -0.094 4.094 22 H 0.095 0.905 23 C -0.146 4.146 24 H 0.052 0.948 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.096 0.904 29 H 0.090 0.910 30 H 0.088 0.912 31 H 0.106 0.894 32 H 0.103 0.897 33 H 0.038 0.962 34 H 0.039 0.961 35 H 0.002 0.998 36 H 0.001 0.999 37 H 0.265 0.735 38 H 0.081 0.919 39 H 0.064 0.936 40 H 0.041 0.959 41 H 0.071 0.929 42 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.252 15.881 -6.599 24.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.101 4.101 3 H 0.101 0.899 4 C -0.169 4.169 5 C -0.024 4.024 6 N -0.340 5.340 7 C 0.303 3.697 8 O -0.468 6.468 9 C -0.167 4.167 10 C -0.119 4.119 11 C -0.010 4.010 12 C -0.586 4.586 13 H 0.068 0.932 14 C -0.194 4.194 15 N -0.569 5.569 16 Si 0.787 3.213 17 H -0.193 1.193 18 H -0.200 1.200 19 H -0.200 1.200 20 C -0.013 4.013 21 C -0.113 4.113 22 H 0.113 0.887 23 C -0.203 4.203 24 H 0.071 0.929 25 H 0.082 0.918 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.109 0.891 30 H 0.106 0.894 31 H 0.124 0.876 32 H 0.122 0.878 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.020 0.980 36 H 0.019 0.981 37 H 0.074 0.926 38 H 0.099 0.901 39 H 0.083 0.917 40 H 0.060 0.940 41 H 0.090 0.910 42 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -17.015 15.618 -6.974 24.126 hybrid contribution 0.849 -0.978 -0.033 1.296 sum -16.166 14.640 -7.007 22.907 Atomic orbital electron populations 1.21845 0.94097 1.01926 1.02357 1.21118 0.96426 0.99355 0.93246 0.89911 1.22050 0.93871 1.01649 0.99297 1.22035 0.95320 1.00256 0.84818 1.48183 1.42503 1.34706 1.08624 1.21071 0.78273 0.78952 0.91389 1.90637 1.59503 1.61362 1.35294 1.21679 1.00682 0.99611 0.94738 1.21159 0.96885 0.96000 0.97899 1.19007 0.94804 0.94628 0.92532 1.21707 1.25468 1.18656 0.92734 0.93201 1.25900 0.98788 0.99908 0.94834 1.70066 1.44792 1.42955 0.99044 0.85443 0.78641 0.78796 0.78449 1.19328 1.19981 1.19978 1.21731 0.94668 0.98853 0.86045 1.21501 0.93330 0.96604 0.99902 0.88669 1.21858 1.01517 0.96180 1.00721 0.92924 0.91797 0.92067 0.92180 0.88571 0.89126 0.89422 0.87620 0.87841 0.94354 0.94238 0.97991 0.98067 0.92624 0.90104 0.91704 0.94007 0.90976 0.94436 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.51 8.87 71.98 0.64 -0.87 16 2 C -0.08 -1.04 2.45 -10.76 -0.03 -1.06 16 3 H 0.08 0.88 8.14 -2.38 -0.02 0.86 16 4 C -0.13 -1.83 5.03 30.68 0.15 -1.67 16 5 C 0.10 1.69 6.34 86.36 0.55 2.24 16 6 N -0.61 -15.02 2.41 -818.90 -1.98 -16.99 16 7 C 0.51 17.48 7.70 87.66 0.67 18.16 16 8 O -0.59 -25.17 15.39 -3.03 -0.05 -25.21 16 9 C -0.13 -4.38 4.05 29.85 0.12 -4.26 16 10 C -0.08 -3.72 4.44 30.59 0.14 -3.58 16 11 C 0.03 1.48 4.97 29.84 0.15 1.63 16 12 C -0.55 -32.78 9.11 25.60 0.23 -32.54 16 13 H 0.05 2.97 7.74 -2.91 -0.02 2.95 16 14 C 0.00 0.22 5.46 84.65 0.46 0.68 16 15 N -0.93 -56.68 13.29 21.45 0.28 -56.39 16 16 Si 0.96 45.67 29.54 68.60 2.03 47.70 16 17 H -0.27 -12.51 7.11 99.48 0.71 -11.81 16 18 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 19 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 20 C 0.11 2.36 5.83 86.36 0.50 2.87 16 21 C -0.09 -1.53 2.72 -10.72 -0.03 -1.56 16 22 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 23 C -0.15 -2.88 8.38 71.98 0.60 -2.27 16 24 H 0.05 0.62 6.47 -2.39 -0.02 0.61 16 25 H 0.06 0.57 8.14 -2.39 -0.02 0.55 16 26 H 0.06 0.56 8.14 -2.38 -0.02 0.55 16 27 H 0.06 1.02 6.35 -2.39 -0.02 1.01 16 28 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.09 1.60 5.93 -2.39 -0.01 1.59 16 30 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.11 3.23 7.94 -2.39 -0.02 3.21 16 32 H 0.10 3.20 7.69 -2.39 -0.02 3.18 16 33 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 34 H 0.04 1.89 8.10 -2.39 -0.02 1.87 16 35 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 36 H 0.00 0.05 8.14 -2.38 -0.02 0.03 16 37 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 38 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 39 H 0.06 1.77 7.00 -2.38 -0.02 1.76 16 40 H 0.04 0.98 5.98 -2.39 -0.01 0.96 16 41 H 0.07 1.16 6.47 -2.39 -0.02 1.14 16 42 H 0.04 0.85 8.14 -2.38 -0.02 0.83 16 Total: -1.00 -71.95 324.81 5.42 -66.53 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: 0.97 Total: 6.64 kcal Atomic # 6 Polarization: -26.43 SS G_CDS: 4.17 Total: -22.26 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -1.69 Total: -73.38 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.05 Total: -25.21 kcal Atomic # 14 Polarization: 45.67 SS G_CDS: 2.03 Total: 47.70 kcal Total: -71.95 5.42 -66.53 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594333865.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.695 kcal (2) G-P(sol) polarization free energy of solvation -71.949 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.644 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.55 seconds