Wall clock time and date at job start Mon Mar 30 2020 07:47:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.45630 * 2 1 4 4 C 1.53037 * 109.45854 * 240.02877 * 2 1 3 5 5 C 1.53194 * 109.31156 * 178.62930 * 4 2 1 6 6 N 1.46926 * 108.77794 * 54.62806 * 5 4 2 7 7 C 1.34779 * 120.62912 * 126.37212 * 6 5 4 8 8 O 1.21273 * 120.00093 * 180.02562 * 7 6 5 9 9 C 1.50706 * 119.99767 * 359.97438 * 7 6 5 10 10 C 1.53000 * 109.46735 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00362 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99850 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47052 * 89.99717 * 16 14 12 18 18 H 1.48495 * 109.47307 * 209.99656 * 16 14 12 19 19 H 1.48500 * 109.47143 * 330.00164 * 16 14 12 20 20 C 1.46924 * 118.74196 * 306.64678 * 6 5 4 21 21 C 1.52765 * 109.00392 * 53.30571 * 20 6 5 22 22 H 1.08998 * 109.38841 * 65.52013 * 21 20 6 23 23 C 1.53003 * 109.56197 * 185.55495 * 21 20 6 24 24 H 1.09000 * 109.47403 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47263 * 299.97014 * 1 2 3 26 26 H 1.09002 * 109.47431 * 59.97117 * 1 2 3 27 27 H 1.08996 * 109.50402 * 58.67223 * 4 2 1 28 28 H 1.09001 * 109.49746 * 298.57643 * 4 2 1 29 29 H 1.09005 * 109.58610 * 294.84283 * 5 4 2 30 30 H 1.08997 * 109.70387 * 174.49465 * 5 4 2 31 31 H 1.09001 * 109.46797 * 60.00350 * 9 7 6 32 32 H 1.08992 * 109.47518 * 300.00347 * 9 7 6 33 33 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 34 34 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 35 35 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 36 36 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 37 37 H 0.96994 * 119.99814 * 180.02562 * 15 14 12 38 38 H 1.08991 * 109.58859 * 173.14216 * 20 6 5 39 39 H 1.09000 * 109.58813 * 293.57228 * 20 6 5 40 40 H 1.08994 * 109.47405 * 179.97438 * 23 21 20 41 41 H 1.09005 * 109.47041 * 299.96610 * 23 21 20 42 42 H 1.08998 * 109.47212 * 59.96347 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5713 -0.6890 -1.2640 6 7 4.0676 -1.2492 0.0004 7 6 4.9610 -2.2583 0.0005 8 8 5.3627 -2.7124 1.0509 9 6 5.4599 -2.8232 -1.3046 10 6 6.4567 -3.9497 -1.0248 11 6 6.9637 -4.5228 -2.3496 12 6 7.9450 -5.6328 -2.0742 13 1 8.1829 -5.9029 -1.0559 14 6 8.5384 -6.3043 -3.1220 15 7 9.3944 -7.2734 -2.8816 16 14 8.1253 -5.8387 -4.8833 17 1 9.0645 -4.7876 -5.3506 18 1 8.2489 -7.0354 -5.7537 19 1 6.7343 -5.3226 -4.9456 20 6 3.5669 -0.6926 1.2645 21 6 2.0396 -0.7207 1.2501 22 1 1.6968 -1.7554 1.2387 23 6 1.5024 -0.0186 2.4990 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5134 0.8903 26 1 -0.3634 0.5143 -0.8897 27 1 1.6573 -0.2209 -2.1398 28 1 1.6976 -1.7557 -1.2382 29 1 3.9145 0.3405 -1.3671 30 1 3.9436 -1.2835 -2.0983 31 1 5.9516 -2.0363 -1.8767 32 1 4.6189 -3.2162 -1.8756 33 1 7.2979 -3.5571 -0.4534 34 1 5.9647 -4.7365 -0.4529 35 1 6.1228 -4.9153 -2.9213 36 1 7.4558 -3.7359 -2.9213 37 1 9.8120 -7.7455 -3.6188 38 1 3.9342 -1.2909 2.0982 39 1 3.9095 0.3366 1.3718 40 1 0.4128 -0.0391 2.4870 41 1 1.8656 -0.5323 3.3891 42 1 1.8464 1.0156 2.5106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594333870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:54 Heat of formation + Delta-G solvation = -70.132645 kcal Electronic energy + Delta-G solvation = -19010.012970 eV Core-core repulsion = 16181.638824 eV Total energy + Delta-G solvation = -2828.374146 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 4.03 seconds Orbital eigenvalues (eV) -40.30873 -38.11236 -34.48018 -34.31097 -32.56501 -31.97224 -28.98766 -28.43936 -26.70483 -24.06060 -22.96027 -22.43728 -20.42863 -19.92084 -18.83710 -16.83887 -16.62210 -15.87264 -15.62256 -15.05376 -14.72124 -14.28184 -14.14899 -13.86013 -13.55070 -13.16429 -12.92515 -12.65979 -12.35761 -12.28446 -12.11696 -11.96098 -11.82763 -11.58277 -11.31476 -11.02922 -10.95467 -10.76713 -10.65917 -10.47483 -9.95889 -9.77821 -9.66450 -9.35820 -9.10491 -8.62381 -8.49058 -5.98716 -3.96340 2.86958 3.04181 3.32867 3.39846 3.42848 4.35024 4.43714 4.48824 4.49799 4.71229 4.86378 5.02000 5.13737 5.18635 5.23828 5.29053 5.34548 5.37959 5.44507 5.52596 5.58946 5.59485 5.62654 5.66045 5.69067 5.76801 5.85334 5.93143 6.01604 6.14094 6.18430 6.52308 6.59285 6.73187 6.95202 7.39163 7.48006 7.48868 7.84927 8.40003 8.61713 9.08253 9.63367 11.15071 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.038592 B = 0.003964 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.371767 B = 7061.128493 C = 7567.262866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.087 4.087 3 H 0.071 0.929 4 C -0.132 4.132 5 C 0.106 3.894 6 N -0.621 5.621 7 C 0.515 3.485 8 O -0.536 6.536 9 C -0.140 4.140 10 C -0.087 4.087 11 C -0.014 4.014 12 C -0.518 4.518 13 H 0.072 0.928 14 C 0.064 3.936 15 N -0.905 5.905 16 Si 0.881 3.119 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.266 1.266 20 C 0.115 3.885 21 C -0.102 4.102 22 H 0.074 0.926 23 C -0.147 4.147 24 H 0.054 0.946 25 H 0.058 0.942 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.087 0.913 32 H 0.087 0.913 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.015 0.985 36 H 0.011 0.989 37 H 0.262 0.738 38 H 0.091 0.909 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.057 0.943 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.157 18.602 3.980 26.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.106 4.106 3 H 0.089 0.911 4 C -0.170 4.170 5 C -0.017 4.017 6 N -0.356 5.356 7 C 0.305 3.695 8 O -0.412 6.412 9 C -0.180 4.180 10 C -0.126 4.126 11 C -0.051 4.051 12 C -0.556 4.556 13 H 0.091 0.909 14 C -0.137 4.137 15 N -0.544 5.544 16 Si 0.709 3.291 17 H -0.203 1.203 18 H -0.215 1.215 19 H -0.191 1.191 20 C -0.007 4.007 21 C -0.122 4.122 22 H 0.092 0.908 23 C -0.204 4.204 24 H 0.073 0.927 25 H 0.077 0.923 26 H 0.072 0.928 27 H 0.093 0.907 28 H 0.087 0.913 29 H 0.085 0.915 30 H 0.109 0.891 31 H 0.105 0.895 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.079 0.921 35 H 0.033 0.967 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.109 0.891 39 H 0.080 0.920 40 H 0.079 0.921 41 H 0.076 0.924 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -18.801 18.207 4.459 26.549 hybrid contribution -0.191 0.224 -1.072 1.111 sum -18.991 18.431 3.387 26.681 Atomic orbital electron populations 1.21887 0.95087 1.01922 1.01671 1.21151 0.95709 0.99385 0.94318 0.91102 1.22004 0.95241 1.01641 0.98111 1.21739 0.94084 0.99375 0.86498 1.48209 1.44222 1.36420 1.06768 1.21175 0.77716 0.78207 0.92425 1.90673 1.57202 1.59298 1.34007 1.21888 1.01290 1.00722 0.94091 1.21274 0.96617 0.94981 0.99680 1.19603 0.96311 0.96153 0.93078 1.21172 1.23379 1.15873 0.95191 0.90939 1.25056 0.94728 0.94760 0.99129 1.69925 1.29352 1.23241 1.31909 0.86758 0.79380 0.77972 0.85021 1.20345 1.21452 1.19052 1.21496 0.92911 0.98823 0.87500 1.21464 0.95257 1.00431 0.95006 0.90784 1.21824 1.01159 1.00416 0.97035 0.92690 0.92323 0.92756 0.90661 0.91286 0.91545 0.89142 0.89462 0.89464 0.92119 0.92114 0.96701 0.97113 0.92809 0.89058 0.92023 0.92055 0.92421 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.96 8.81 37.16 0.33 -0.63 16 2 C -0.09 -0.65 2.23 -90.58 -0.20 -0.85 16 3 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 4 C -0.13 -1.03 5.36 -26.61 -0.14 -1.18 16 5 C 0.11 0.98 6.34 -3.71 -0.02 0.96 16 6 N -0.62 -7.79 2.98 -173.03 -0.52 -8.31 16 7 C 0.52 8.48 7.70 -10.98 -0.08 8.39 16 8 O -0.54 -10.96 15.39 5.56 0.09 -10.87 16 9 C -0.14 -2.26 4.05 -27.88 -0.11 -2.38 16 10 C -0.09 -1.86 4.44 -26.73 -0.12 -1.98 16 11 C -0.01 -0.34 4.04 -27.89 -0.11 -0.46 16 12 C -0.52 -15.32 9.66 -34.44 -0.33 -15.65 16 13 H 0.07 2.33 7.99 -52.49 -0.42 1.91 16 14 C 0.06 1.91 5.47 -17.82 -0.10 1.81 16 15 N -0.90 -28.63 13.96 55.43 0.77 -27.85 16 16 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 17 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -7.11 7.11 56.52 0.40 -6.70 16 19 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 20 C 0.12 1.28 5.69 -3.93 -0.02 1.26 16 21 C -0.10 -0.91 2.40 -90.72 -0.22 -1.12 16 22 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 23 C -0.15 -1.06 8.81 37.16 0.33 -0.73 16 24 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 25 H 0.06 0.35 6.40 -51.93 -0.33 0.01 16 26 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 27 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 0.81 5.93 -51.93 -0.31 0.51 16 31 H 0.09 1.25 7.94 -51.93 -0.41 0.83 16 32 H 0.09 1.25 7.70 -51.93 -0.40 0.86 16 33 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 34 H 0.06 1.37 8.10 -51.93 -0.42 0.95 16 35 H 0.01 0.35 7.20 -51.93 -0.37 -0.02 16 36 H 0.01 0.25 7.57 -51.93 -0.39 -0.14 16 37 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 38 H 0.09 1.21 7.01 -51.93 -0.36 0.84 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.39 6.40 -51.93 -0.33 0.06 16 41 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 LS Contribution 325.61 15.07 4.91 4.91 Total: -1.00 -33.67 325.61 -7.80 -41.47 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -7.57 Total: -4.03 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -0.81 Total: -12.56 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.26 Total: -36.16 kcal Atomic # 8 Polarization: -10.96 SS G_CDS: 0.09 Total: -10.87 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -33.67 -7.80 -41.47 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594333870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.659 kcal (2) G-P(sol) polarization free energy of solvation -33.673 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.04 seconds