Wall clock time and date at job start Mon Mar 30 2020 07:47:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09007 * 109.45630 * 2 1 4 4 C 1.53037 * 109.45854 * 240.02877 * 2 1 3 5 5 C 1.53194 * 109.31156 * 178.62930 * 4 2 1 6 6 N 1.46926 * 108.77794 * 54.62806 * 5 4 2 7 7 C 1.34779 * 120.62912 * 126.37212 * 6 5 4 8 8 O 1.21273 * 120.00093 * 180.02562 * 7 6 5 9 9 C 1.50706 * 119.99767 * 359.97438 * 7 6 5 10 10 C 1.53000 * 109.46735 * 180.02562 * 9 7 6 11 11 C 1.52997 * 109.47060 * 180.02562 * 10 9 7 12 12 C 1.50697 * 109.47466 * 180.02562 * 11 10 9 13 13 H 1.08001 * 119.99890 * 0.02562 * 12 11 10 14 14 C 1.37876 * 120.00428 * 179.97438 * 12 11 10 15 15 N 1.31517 * 120.00362 * 180.02562 * 14 12 11 16 16 Si 1.86804 * 119.99850 * 359.97438 * 14 12 11 17 17 H 1.48504 * 109.47052 * 89.99717 * 16 14 12 18 18 H 1.48495 * 109.47307 * 209.99656 * 16 14 12 19 19 H 1.48500 * 109.47143 * 330.00164 * 16 14 12 20 20 C 1.46924 * 118.74196 * 306.64678 * 6 5 4 21 21 C 1.52765 * 109.00392 * 53.30571 * 20 6 5 22 22 H 1.08998 * 109.38841 * 65.52013 * 21 20 6 23 23 C 1.53003 * 109.56197 * 185.55495 * 21 20 6 24 24 H 1.09000 * 109.47403 * 179.97438 * 1 2 3 25 25 H 1.09005 * 109.47263 * 299.97014 * 1 2 3 26 26 H 1.09002 * 109.47431 * 59.97117 * 1 2 3 27 27 H 1.08996 * 109.50402 * 58.67223 * 4 2 1 28 28 H 1.09001 * 109.49746 * 298.57643 * 4 2 1 29 29 H 1.09005 * 109.58610 * 294.84283 * 5 4 2 30 30 H 1.08997 * 109.70387 * 174.49465 * 5 4 2 31 31 H 1.09001 * 109.46797 * 60.00350 * 9 7 6 32 32 H 1.08992 * 109.47518 * 300.00347 * 9 7 6 33 33 H 1.09002 * 109.47398 * 300.00410 * 10 9 7 34 34 H 1.09001 * 109.47194 * 60.00591 * 10 9 7 35 35 H 1.09002 * 109.47153 * 300.00319 * 11 10 9 36 36 H 1.08998 * 109.47533 * 59.99948 * 11 10 9 37 37 H 0.96994 * 119.99814 * 180.02562 * 15 14 12 38 38 H 1.08991 * 109.58859 * 173.14216 * 20 6 5 39 39 H 1.09000 * 109.58813 * 293.57228 * 20 6 5 40 40 H 1.08994 * 109.47405 * 179.97438 * 23 21 20 41 41 H 1.09005 * 109.47041 * 299.96610 * 23 21 20 42 42 H 1.08998 * 109.47212 * 59.96347 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8931 1.0278 0.0000 4 6 2.0398 -0.7209 -1.2500 5 6 3.5713 -0.6890 -1.2640 6 7 4.0676 -1.2492 0.0004 7 6 4.9610 -2.2583 0.0005 8 8 5.3627 -2.7124 1.0509 9 6 5.4599 -2.8232 -1.3046 10 6 6.4567 -3.9497 -1.0248 11 6 6.9637 -4.5228 -2.3496 12 6 7.9450 -5.6328 -2.0742 13 1 8.1829 -5.9029 -1.0559 14 6 8.5384 -6.3043 -3.1220 15 7 9.3944 -7.2734 -2.8816 16 14 8.1253 -5.8387 -4.8833 17 1 9.0645 -4.7876 -5.3506 18 1 8.2489 -7.0354 -5.7537 19 1 6.7343 -5.3226 -4.9456 20 6 3.5669 -0.6926 1.2645 21 6 2.0396 -0.7207 1.2501 22 1 1.6968 -1.7554 1.2387 23 6 1.5024 -0.0186 2.4990 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5134 0.8903 26 1 -0.3634 0.5143 -0.8897 27 1 1.6573 -0.2209 -2.1398 28 1 1.6976 -1.7557 -1.2382 29 1 3.9145 0.3405 -1.3671 30 1 3.9436 -1.2835 -2.0983 31 1 5.9516 -2.0363 -1.8767 32 1 4.6189 -3.2162 -1.8756 33 1 7.2979 -3.5571 -0.4534 34 1 5.9647 -4.7365 -0.4529 35 1 6.1228 -4.9153 -2.9213 36 1 7.4558 -3.7359 -2.9213 37 1 9.8120 -7.7455 -3.6188 38 1 3.9342 -1.2909 2.0982 39 1 3.9095 0.3366 1.3718 40 1 0.4128 -0.0391 2.4870 41 1 1.8656 -0.5323 3.3891 42 1 1.8464 1.0156 2.5106 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594333870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:47:51 Heat of formation + Delta-G solvation = -91.133663 kcal Electronic energy + Delta-G solvation = -19010.923642 eV Core-core repulsion = 16181.638824 eV Total energy + Delta-G solvation = -2829.284818 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.34603 -39.11769 -36.17966 -35.40367 -34.14677 -33.18132 -30.51170 -29.27043 -27.75777 -25.50740 -24.07132 -23.16056 -22.05202 -20.88746 -19.94274 -18.83484 -17.97674 -16.95600 -16.86831 -16.23878 -15.69533 -15.56262 -15.23520 -14.94491 -14.69915 -14.37041 -14.26475 -13.94529 -13.78225 -13.23845 -13.02956 -12.89437 -12.69454 -12.64250 -12.53681 -12.49088 -11.98199 -11.77976 -11.74082 -11.70557 -11.51173 -11.39150 -11.26776 -11.13402 -10.74982 -10.69773 -9.62417 -8.27664 -6.33626 1.38716 1.42660 1.54781 1.62065 2.02444 2.39563 3.07318 3.56406 3.76767 3.81611 3.90259 4.05114 4.10656 4.21341 4.31928 4.39360 4.54397 4.62313 4.66421 4.71320 4.77121 4.82989 4.86300 4.89498 4.93044 4.98241 5.03110 5.07740 5.08795 5.17029 5.23710 5.28313 5.47344 5.53105 5.56693 5.58929 5.64079 5.68039 6.30124 6.39845 6.74995 7.19094 7.30794 8.90181 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.038592 B = 0.003964 C = 0.003699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 725.371767 B = 7061.128493 C = 7567.262866 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.084 4.084 3 H 0.083 0.917 4 C -0.129 4.129 5 C 0.097 3.903 6 N -0.612 5.612 7 C 0.509 3.491 8 O -0.592 6.592 9 C -0.128 4.128 10 C -0.080 4.080 11 C -0.008 4.008 12 C -0.541 4.541 13 H 0.018 0.982 14 C -0.004 4.004 15 N -0.958 5.958 16 Si 0.963 3.037 17 H -0.263 1.263 18 H -0.286 1.286 19 H -0.235 1.235 20 C 0.111 3.889 21 C -0.097 4.097 22 H 0.053 0.947 23 C -0.143 4.143 24 H 0.046 0.954 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.100 0.900 28 H 0.055 0.945 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.117 0.883 32 H 0.114 0.886 33 H 0.035 0.965 34 H 0.033 0.967 35 H 0.031 0.969 36 H 0.030 0.970 37 H 0.267 0.733 38 H 0.061 0.939 39 H 0.079 0.921 40 H 0.072 0.928 41 H 0.048 0.952 42 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.581 21.592 1.173 30.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.103 4.103 3 H 0.101 0.899 4 C -0.167 4.167 5 C -0.025 4.025 6 N -0.345 5.345 7 C 0.299 3.701 8 O -0.473 6.473 9 C -0.168 4.168 10 C -0.119 4.119 11 C -0.045 4.045 12 C -0.579 4.579 13 H 0.036 0.964 14 C -0.200 4.200 15 N -0.598 5.598 16 Si 0.785 3.215 17 H -0.188 1.188 18 H -0.212 1.212 19 H -0.158 1.158 20 C -0.011 4.011 21 C -0.116 4.116 22 H 0.072 0.928 23 C -0.201 4.201 24 H 0.065 0.935 25 H 0.083 0.917 26 H 0.084 0.916 27 H 0.118 0.882 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.117 0.883 31 H 0.135 0.865 32 H 0.132 0.868 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.049 0.951 36 H 0.049 0.951 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.097 0.903 40 H 0.091 0.909 41 H 0.067 0.933 42 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.274 21.249 1.650 30.113 hybrid contribution 0.589 -0.727 -0.076 0.939 sum -20.684 20.522 1.574 29.180 Atomic orbital electron populations 1.21860 0.94125 1.01691 1.02594 1.21155 0.96453 0.99578 0.93083 0.89889 1.22006 0.94043 1.01303 0.99308 1.22096 0.95141 1.00458 0.84778 1.48271 1.42593 1.34870 1.08736 1.21242 0.78253 0.78896 0.91702 1.90658 1.59539 1.61424 1.35644 1.21736 1.00888 0.99559 0.94578 1.21049 0.97012 0.96118 0.97678 1.19533 0.95436 0.94808 0.94705 1.21559 1.25198 1.18079 0.93093 0.96385 1.26221 0.94167 0.94300 1.05280 1.70110 1.30897 1.24870 1.33970 0.85478 0.80909 0.78067 0.77063 1.18787 1.21170 1.15788 1.21618 0.94570 0.98866 0.86044 1.21408 0.93351 0.99884 0.96971 0.92814 1.21807 1.01816 1.00692 0.95782 0.93506 0.91693 0.91592 0.88177 0.92572 0.89352 0.88308 0.86510 0.86793 0.94629 0.94767 0.95094 0.95126 0.92473 0.92067 0.90257 0.90885 0.93301 0.91393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.81 71.98 0.63 -0.80 16 2 C -0.08 -1.00 2.23 -10.77 -0.02 -1.02 16 3 H 0.08 0.84 8.14 -2.38 -0.02 0.82 16 4 C -0.13 -1.56 5.36 30.67 0.16 -1.40 16 5 C 0.10 1.44 6.34 86.36 0.55 1.99 16 6 N -0.61 -14.42 2.98 -819.74 -2.44 -16.86 16 7 C 0.51 16.61 7.70 87.66 0.67 17.28 16 8 O -0.59 -25.38 15.39 -3.01 -0.05 -25.43 16 9 C -0.13 -3.90 4.05 29.85 0.12 -3.78 16 10 C -0.08 -3.48 4.44 30.59 0.14 -3.34 16 11 C -0.01 -0.36 4.04 29.85 0.12 -0.24 16 12 C -0.54 -33.06 9.66 25.60 0.25 -32.81 16 13 H 0.02 1.24 7.99 -2.91 -0.02 1.21 16 14 C 0.00 -0.23 5.47 84.65 0.46 0.23 16 15 N -0.96 -62.44 13.96 21.45 0.30 -62.14 16 16 Si 0.96 44.11 27.47 68.60 1.88 45.99 16 17 H -0.26 -11.41 7.11 99.48 0.71 -10.71 16 18 H -0.29 -12.90 7.11 99.48 0.71 -12.19 16 19 H -0.23 -9.55 6.54 99.48 0.65 -8.90 16 20 C 0.11 2.40 5.69 86.22 0.49 2.89 16 21 C -0.10 -1.58 2.40 -10.86 -0.03 -1.61 16 22 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 23 C -0.14 -1.84 8.81 71.98 0.63 -1.20 16 24 H 0.05 0.54 8.14 -2.39 -0.02 0.52 16 25 H 0.06 0.56 6.40 -2.38 -0.02 0.55 16 26 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 27 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.09 1.01 8.14 -2.38 -0.02 0.99 16 30 H 0.10 1.33 5.93 -2.39 -0.01 1.32 16 31 H 0.12 2.89 7.94 -2.39 -0.02 2.87 16 32 H 0.11 2.88 7.70 -2.39 -0.02 2.86 16 33 H 0.03 1.67 8.10 -2.39 -0.02 1.65 16 34 H 0.03 1.61 8.10 -2.39 -0.02 1.59 16 35 H 0.03 1.38 7.20 -2.39 -0.02 1.36 16 36 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 37 H 0.27 16.05 8.31 -92.71 -0.77 15.28 16 38 H 0.06 1.70 7.01 -2.39 -0.02 1.68 16 39 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.07 0.78 6.40 -2.39 -0.02 0.76 16 41 H 0.05 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -78.04 325.61 4.78 -73.26 By element: Atomic # 1 Polarization: 8.07 SS G_CDS: 0.90 Total: 8.98 kcal Atomic # 6 Polarization: -27.98 SS G_CDS: 4.18 Total: -23.80 kcal Atomic # 7 Polarization: -76.86 SS G_CDS: -2.14 Total: -79.00 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.05 Total: -25.43 kcal Atomic # 14 Polarization: 44.11 SS G_CDS: 1.88 Total: 45.99 kcal Total: -78.04 4.78 -73.26 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594333870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.876 kcal (2) G-P(sol) polarization free energy of solvation -78.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds