Wall clock time and date at job start Mon Mar 30 2020 07:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47333 * 2 1 4 4 C 1.50700 * 109.47541 * 239.99684 * 2 1 3 5 5 H 1.08002 * 120.00239 * 240.00520 * 4 2 1 6 6 C 1.37874 * 119.99931 * 59.99937 * 4 2 1 7 7 N 1.31517 * 120.00030 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00182 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46936 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47181 * 119.99838 * 8 6 4 11 11 H 1.48498 * 109.47212 * 240.00088 * 8 6 4 12 12 C 1.50706 * 109.47184 * 119.99836 * 2 1 3 13 13 O 1.21278 * 120.00163 * 119.99918 * 12 2 1 14 14 N 1.34781 * 119.99804 * 300.00359 * 12 2 1 15 15 C 1.46499 * 119.99874 * 179.97438 * 14 12 2 16 16 H 1.08992 * 109.47397 * 34.99792 * 15 14 12 17 17 C 1.53000 * 109.46840 * 274.99457 * 15 14 12 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47317 * 59.99960 * 18 17 15 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 22 22 C 1.53002 * 109.46982 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 24 24 H 1.08993 * 109.47194 * 179.97438 * 23 20 19 25 25 C 1.53006 * 109.47127 * 59.99878 * 23 20 19 26 26 H 1.09002 * 109.47333 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47578 * 300.00408 * 1 2 3 28 28 H 1.09000 * 109.46781 * 60.00343 * 1 2 3 29 29 H 0.96996 * 120.00179 * 179.97438 * 7 6 4 30 30 H 0.97002 * 119.99716 * 359.97438 * 14 12 2 31 31 H 1.09002 * 109.47398 * 300.00326 * 17 15 14 32 32 H 1.09001 * 109.47194 * 60.00507 * 17 15 14 33 33 H 1.08996 * 109.47853 * 180.02562 * 18 17 15 34 34 H 1.09002 * 109.47153 * 300.00319 * 18 17 15 35 35 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 37 37 H 1.09002 * 109.47067 * 299.99652 * 22 20 19 38 38 H 1.09000 * 109.47312 * 59.99678 * 22 20 19 39 39 H 1.09004 * 109.46930 * 179.97438 * 22 20 19 40 40 H 1.09001 * 109.46801 * 300.00272 * 25 23 20 41 41 H 1.08998 * 109.46505 * 59.99871 * 25 23 20 42 42 H 1.09000 * 109.47050 * 180.02562 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 3.1467 -2.2871 -3.6036 10 1 1.1663 -1.5869 -4.8159 11 1 3.1468 -0.1876 -4.8164 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1193 14 7 1.7066 -0.2499 2.4546 15 6 2.1945 -0.9408 3.6508 16 1 3.1935 -1.3333 3.4617 17 6 1.2499 -2.0943 3.9944 18 6 1.7590 -2.8154 5.2440 19 6 1.8102 -1.8322 6.4151 20 6 2.7548 -0.6786 6.0715 21 1 3.7540 -1.0711 5.8827 22 6 2.8055 0.3051 7.2423 23 6 2.2457 0.0426 4.8218 24 1 2.9183 0.8647 4.5774 25 6 0.8430 0.5936 5.0868 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7096 1.1616 -3.4844 30 1 1.1492 0.5390 2.5435 31 1 0.2507 -1.7017 4.1836 32 1 1.2131 -2.7946 3.1600 33 1 1.0864 -3.6375 5.4886 34 1 2.7582 -3.2080 5.0552 35 1 2.1734 -2.3458 7.3052 36 1 0.8110 -1.4396 6.6038 37 1 1.8062 0.6975 7.4307 38 1 3.1680 -0.2085 8.1328 39 1 3.4788 1.1267 6.9977 40 1 0.1702 -0.2283 5.3316 41 1 0.8796 1.2940 5.9211 42 1 0.4802 1.1070 4.1964 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596632695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:05 Heat of formation + Delta-G solvation = -73.694281 kcal Electronic energy + Delta-G solvation = -19754.585310 eV Core-core repulsion = 16926.056720 eV Total energy + Delta-G solvation = -2828.528590 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.01212 -38.07006 -33.96297 -33.65721 -32.54756 -30.85954 -29.66431 -27.16637 -25.73560 -25.08611 -22.99100 -21.85083 -20.96385 -19.25029 -18.40170 -16.39838 -16.09894 -15.67371 -15.02293 -14.70762 -14.44661 -14.13816 -13.95347 -13.50728 -13.03413 -12.78557 -12.60697 -12.43104 -12.20778 -12.00982 -11.57948 -11.50666 -11.30837 -11.05929 -10.98362 -10.72732 -10.66086 -10.63410 -10.39295 -10.22280 -10.06260 -10.03073 -9.88921 -8.91385 -8.52477 -8.32433 -8.24691 -5.99279 -4.01875 3.34688 3.42046 3.50718 3.82193 3.97347 4.50881 4.61182 4.70883 4.80398 5.10900 5.17305 5.28167 5.33298 5.34179 5.44399 5.47330 5.61017 5.65659 5.73309 5.76889 5.87622 5.93046 5.97722 6.07701 6.11034 6.15808 6.30141 6.33040 6.37001 6.51429 6.63522 6.67160 6.88039 6.98445 7.25035 7.53161 7.80311 8.04588 8.22033 8.54301 9.07875 9.34872 9.63797 11.08447 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.041261 B = 0.004804 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.442065 B = 5826.909124 C = 6063.766143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.027 3.973 3 H 0.051 0.949 4 C -0.497 4.497 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.519 3.481 13 O -0.548 6.548 14 N -0.743 5.743 15 C 0.151 3.849 16 H 0.080 0.920 17 C -0.130 4.130 18 C -0.116 4.116 19 C -0.115 4.115 20 C -0.084 4.084 21 H 0.070 0.930 22 C -0.147 4.147 23 C -0.092 4.092 24 H 0.073 0.927 25 C -0.154 4.154 26 H 0.030 0.970 27 H 0.011 0.989 28 H 0.092 0.908 29 H 0.259 0.741 30 H 0.393 0.607 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.060 0.940 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.065 0.935 37 H 0.058 0.942 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.057 0.943 42 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.780 -0.119 18.461 18.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.006 3.994 3 H 0.068 0.932 4 C -0.536 4.536 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.309 3.691 13 O -0.424 6.424 14 N -0.396 5.396 15 C 0.046 3.954 16 H 0.098 0.902 17 C -0.169 4.169 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.103 4.103 21 H 0.089 0.911 22 C -0.205 4.205 23 C -0.111 4.111 24 H 0.092 0.908 25 C -0.211 4.211 26 H 0.049 0.951 27 H 0.030 0.970 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.228 0.772 31 H 0.082 0.918 32 H 0.086 0.914 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.081 0.919 41 H 0.076 0.924 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.335 -0.733 18.208 18.226 hybrid contribution -0.019 0.008 -0.820 0.820 sum -0.354 -0.725 17.388 17.407 Atomic orbital electron populations 1.21722 0.96629 0.99715 1.00802 1.18875 0.94089 0.96805 0.89599 0.93172 1.21200 1.30675 1.12692 0.89025 0.90767 1.24954 0.95187 0.95095 0.99099 1.69884 1.37344 1.23182 1.23328 0.86417 0.78601 0.79803 0.82556 1.19580 1.21091 1.21090 1.21934 0.78324 0.84262 0.84596 1.90517 1.38075 1.26947 1.86817 1.46420 1.55335 1.32391 1.05490 1.20761 0.98373 0.91874 0.84419 0.90198 1.21957 0.99323 0.97976 0.97661 1.21485 1.01487 0.97697 0.94763 1.21650 0.99834 0.96029 0.97760 1.21093 0.99381 0.95498 0.94368 0.91138 1.21877 1.01888 0.99067 0.97636 1.21367 0.97708 0.97779 0.94292 0.90837 1.22005 0.96605 1.01030 1.01423 0.95083 0.97020 0.88939 0.93098 0.77184 0.91820 0.91421 0.92140 0.91976 0.92326 0.91679 0.92350 0.92940 0.92762 0.91852 0.92438 0.92646 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 8.87 37.15 0.33 -2.72 16 2 C 0.03 0.69 2.64 -92.92 -0.25 0.45 16 3 H 0.05 1.32 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -14.35 8.37 -34.44 -0.29 -14.63 16 5 H 0.07 2.27 6.75 -52.49 -0.35 1.91 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.51 11.32 55.43 0.63 -24.88 16 8 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 9 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 C 0.52 12.02 7.11 -10.98 -0.08 11.94 16 13 O -0.55 -14.49 15.12 5.56 0.08 -14.41 16 14 N -0.74 -13.14 4.89 -53.81 -0.26 -13.40 16 15 C 0.15 2.28 2.15 -67.93 -0.15 2.14 16 16 H 0.08 1.40 7.58 -51.93 -0.39 1.00 16 17 C -0.13 -1.85 5.22 -26.73 -0.14 -1.99 16 18 C -0.12 -1.33 5.92 -26.73 -0.16 -1.48 16 19 C -0.12 -1.11 4.93 -26.73 -0.13 -1.24 16 20 C -0.08 -0.84 2.50 -90.62 -0.23 -1.07 16 21 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 22 C -0.15 -1.23 8.84 37.16 0.33 -0.90 16 23 C -0.09 -1.07 2.41 -90.62 -0.22 -1.29 16 24 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 25 C -0.15 -1.58 7.97 37.16 0.30 -1.28 16 26 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 28 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 29 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 30 H 0.39 6.16 6.28 -40.82 -0.26 5.91 16 31 H 0.06 0.85 6.43 -51.93 -0.33 0.51 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.60 6.43 -51.93 -0.33 0.27 16 37 H 0.06 0.46 6.43 -51.93 -0.33 0.13 16 38 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 40 H 0.06 0.64 4.81 -51.93 -0.25 0.40 16 41 H 0.06 0.51 6.43 -51.93 -0.33 0.18 16 42 H 0.05 0.59 6.50 -51.93 -0.34 0.25 16 LS Contribution 315.42 15.07 4.75 4.75 Total: -1.00 -30.73 315.42 -7.59 -38.32 By element: Atomic # 1 Polarization: 10.10 SS G_CDS: -7.00 Total: 3.11 kcal Atomic # 6 Polarization: -9.80 SS G_CDS: -0.77 Total: -10.57 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.36 Total: -38.28 kcal Atomic # 8 Polarization: -14.49 SS G_CDS: 0.08 Total: -14.41 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -30.73 -7.59 -38.32 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596632695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.378 kcal (2) G-P(sol) polarization free energy of solvation -30.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.106 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.694 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds