Wall clock time and date at job start Mon Mar 30 2020 07:01:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09002 * 109.47333 * 2 1 4 4 C 1.50700 * 109.47541 * 239.99684 * 2 1 3 5 5 H 1.08002 * 120.00239 * 240.00520 * 4 2 1 6 6 C 1.37874 * 119.99931 * 59.99937 * 4 2 1 7 7 N 1.31517 * 120.00030 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00182 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46936 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47181 * 119.99838 * 8 6 4 11 11 H 1.48498 * 109.47212 * 240.00088 * 8 6 4 12 12 C 1.50706 * 109.47184 * 119.99836 * 2 1 3 13 13 O 1.21278 * 120.00163 * 119.99918 * 12 2 1 14 14 N 1.34781 * 119.99804 * 300.00359 * 12 2 1 15 15 C 1.46499 * 119.99874 * 179.97438 * 14 12 2 16 16 H 1.08992 * 109.47397 * 34.99792 * 15 14 12 17 17 C 1.53000 * 109.46840 * 274.99457 * 15 14 12 18 18 C 1.52997 * 109.47060 * 180.02562 * 17 15 14 19 19 C 1.52999 * 109.47317 * 59.99960 * 18 17 15 20 20 C 1.53005 * 109.47159 * 300.00546 * 19 18 17 21 21 H 1.09002 * 109.46935 * 299.99411 * 20 19 18 22 22 C 1.53002 * 109.46982 * 179.97438 * 20 19 18 23 23 C 1.52997 * 109.47452 * 59.99536 * 20 19 18 24 24 H 1.08993 * 109.47194 * 179.97438 * 23 20 19 25 25 C 1.53006 * 109.47127 * 59.99878 * 23 20 19 26 26 H 1.09002 * 109.47333 * 180.02562 * 1 2 3 27 27 H 1.08994 * 109.47578 * 300.00408 * 1 2 3 28 28 H 1.09000 * 109.46781 * 60.00343 * 1 2 3 29 29 H 0.96996 * 120.00179 * 179.97438 * 7 6 4 30 30 H 0.97002 * 119.99716 * 359.97438 * 14 12 2 31 31 H 1.09002 * 109.47398 * 300.00326 * 17 15 14 32 32 H 1.09001 * 109.47194 * 60.00507 * 17 15 14 33 33 H 1.08996 * 109.47853 * 180.02562 * 18 17 15 34 34 H 1.09002 * 109.47153 * 300.00319 * 18 17 15 35 35 H 1.09000 * 109.47486 * 180.02562 * 19 18 17 36 36 H 1.09002 * 109.46716 * 60.00091 * 19 18 17 37 37 H 1.09002 * 109.47067 * 299.99652 * 22 20 19 38 38 H 1.09000 * 109.47312 * 59.99678 * 22 20 19 39 39 H 1.09004 * 109.46930 * 179.97438 * 22 20 19 40 40 H 1.09001 * 109.46801 * 300.00272 * 25 23 20 41 41 H 1.08998 * 109.46505 * 59.99871 * 25 23 20 42 42 H 1.09000 * 109.47050 * 180.02562 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 3.1467 -2.2871 -3.6036 10 1 1.1663 -1.5869 -4.8159 11 1 3.1468 -0.1876 -4.8164 12 6 2.0323 -0.7104 1.2305 13 8 2.7295 -1.6965 1.1193 14 7 1.7066 -0.2499 2.4546 15 6 2.1945 -0.9408 3.6508 16 1 3.1935 -1.3333 3.4617 17 6 1.2499 -2.0943 3.9944 18 6 1.7590 -2.8154 5.2440 19 6 1.8102 -1.8322 6.4151 20 6 2.7548 -0.6786 6.0715 21 1 3.7540 -1.0711 5.8827 22 6 2.8055 0.3051 7.2423 23 6 2.2457 0.0426 4.8218 24 1 2.9183 0.8647 4.5774 25 6 0.8430 0.5936 5.0868 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 0.7096 1.1616 -3.4844 30 1 1.1492 0.5390 2.5435 31 1 0.2507 -1.7017 4.1836 32 1 1.2131 -2.7946 3.1600 33 1 1.0864 -3.6375 5.4886 34 1 2.7582 -3.2080 5.0552 35 1 2.1734 -2.3458 7.3052 36 1 0.8110 -1.4396 6.6038 37 1 1.8062 0.6975 7.4307 38 1 3.1680 -0.2085 8.1328 39 1 3.4788 1.1267 6.9977 40 1 0.1702 -0.2283 5.3316 41 1 0.8796 1.2940 5.9211 42 1 0.4802 1.1070 4.1964 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596632695.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:05 Heat of formation + Delta-G solvation = -92.177895 kcal Electronic energy + Delta-G solvation = -19755.386820 eV Core-core repulsion = 16926.056720 eV Total energy + Delta-G solvation = -2829.330100 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.28870 -39.62405 -35.78343 -35.35154 -33.52298 -32.66734 -31.00665 -28.16239 -27.20949 -26.60749 -24.69151 -22.89478 -22.23683 -20.93520 -19.40509 -18.36207 -17.86117 -16.98595 -16.53030 -16.16279 -15.89582 -15.53991 -15.15960 -14.79040 -14.51803 -14.28395 -13.93031 -13.48398 -13.40411 -13.18080 -12.97721 -12.78068 -12.68239 -12.59446 -12.48998 -12.29798 -12.17753 -12.07514 -12.02862 -11.55503 -11.28275 -11.11597 -11.01904 -10.98007 -10.58403 -10.24378 -9.85705 -8.15749 -6.25991 1.38295 1.40009 1.53826 1.96200 2.36385 2.55279 3.13524 3.68308 3.75377 3.91383 4.16061 4.21666 4.27082 4.42419 4.42574 4.56271 4.58816 4.73320 4.75860 4.78264 4.85995 4.93747 4.98530 5.03453 5.06094 5.07083 5.15459 5.17362 5.24107 5.32239 5.40963 5.45430 5.50044 5.52051 5.68356 5.71662 5.77640 5.94580 6.21651 6.76231 6.88416 7.40077 7.58825 8.90325 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.041261 B = 0.004804 C = 0.004616 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 678.442065 B = 5826.909124 C = 6063.766143 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.022 3.978 3 H 0.039 0.961 4 C -0.528 4.528 5 H 0.046 0.954 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.273 1.273 12 C 0.520 3.480 13 O -0.589 6.589 14 N -0.721 5.721 15 C 0.147 3.853 16 H 0.050 0.950 17 C -0.126 4.126 18 C -0.113 4.113 19 C -0.109 4.109 20 C -0.084 4.084 21 H 0.060 0.940 22 C -0.143 4.143 23 C -0.085 4.085 24 H 0.069 0.931 25 C -0.152 4.152 26 H 0.021 0.979 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.265 0.735 30 H 0.406 0.594 31 H 0.078 0.922 32 H 0.028 0.972 33 H 0.073 0.927 34 H 0.051 0.949 35 H 0.076 0.924 36 H 0.077 0.923 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.669 0.577 20.387 20.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.001 3.999 3 H 0.057 0.943 4 C -0.566 4.566 5 H 0.064 0.936 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.206 1.206 10 H -0.198 1.198 11 H -0.199 1.199 12 C 0.309 3.691 13 O -0.469 6.469 14 N -0.374 5.374 15 C 0.043 3.957 16 H 0.068 0.932 17 C -0.164 4.164 18 C -0.151 4.151 19 C -0.147 4.147 20 C -0.103 4.103 21 H 0.078 0.922 22 C -0.200 4.200 23 C -0.104 4.104 24 H 0.088 0.912 25 C -0.209 4.209 26 H 0.040 0.960 27 H 0.069 0.931 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.244 0.756 31 H 0.096 0.904 32 H 0.047 0.953 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.095 0.905 36 H 0.096 0.904 37 H 0.087 0.913 38 H 0.082 0.918 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.097 0.903 42 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.252 0.003 20.174 20.213 hybrid contribution 0.271 -0.192 -1.396 1.435 sum -0.981 -0.189 18.778 18.805 Atomic orbital electron populations 1.21527 0.95018 0.99289 1.01648 1.18819 0.95376 0.95844 0.89832 0.94296 1.21310 1.31475 1.12630 0.91209 0.93564 1.25598 0.95205 0.95768 1.01403 1.69954 1.37286 1.23569 1.24232 0.85543 0.78373 0.78566 0.79401 1.20602 1.19810 1.19865 1.21541 0.78098 0.83676 0.85771 1.90494 1.40102 1.28764 1.87577 1.46184 1.54190 1.32277 1.04779 1.20972 0.96980 0.93248 0.84497 0.93185 1.21893 0.99920 0.96882 0.97738 1.21475 1.01017 0.98422 0.94204 1.21633 1.00465 0.95319 0.97238 1.21097 0.98912 0.96058 0.94197 0.92151 1.21836 1.02593 0.98564 0.96980 1.21328 0.99047 0.96720 0.93309 0.91221 1.22017 0.95220 1.01580 1.02101 0.96003 0.93055 0.91068 0.92595 0.75648 0.90392 0.95262 0.90812 0.93062 0.90503 0.90445 0.91341 0.91786 0.92804 0.91343 0.90265 0.93127 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.87 71.98 0.64 -4.81 16 2 C 0.02 1.17 2.64 -12.29 -0.03 1.13 16 3 H 0.04 2.09 8.14 -2.39 -0.02 2.07 16 4 C -0.53 -31.43 8.37 25.60 0.21 -31.22 16 5 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 6 C 0.02 1.10 5.30 84.65 0.45 1.55 16 7 N -0.91 -51.86 11.32 21.45 0.24 -51.62 16 8 Si 0.96 45.79 29.54 68.60 2.03 47.82 16 9 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 10 H -0.27 -12.49 7.11 99.48 0.71 -11.79 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 C 0.52 24.81 7.11 87.66 0.62 25.44 16 13 O -0.59 -32.78 15.12 -3.02 -0.05 -32.83 16 14 N -0.72 -25.57 4.89 -442.53 -2.16 -27.73 16 15 C 0.15 4.46 2.15 44.99 0.10 4.56 16 16 H 0.05 1.83 7.58 -2.39 -0.02 1.81 16 17 C -0.13 -3.53 5.22 30.59 0.16 -3.37 16 18 C -0.11 -2.44 5.92 30.59 0.18 -2.26 16 19 C -0.11 -1.77 4.93 30.60 0.15 -1.62 16 20 C -0.08 -1.47 2.50 -10.79 -0.03 -1.50 16 21 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 22 C -0.14 -1.89 8.84 71.98 0.64 -1.25 16 23 C -0.09 -1.82 2.41 -10.79 -0.03 -1.85 16 24 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 25 C -0.15 -2.65 7.97 71.98 0.57 -2.08 16 26 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 27 H 0.05 1.92 7.56 -2.39 -0.02 1.90 16 28 H 0.07 3.65 6.07 -2.39 -0.01 3.63 16 29 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 30 H 0.41 12.25 6.28 -92.71 -0.58 11.67 16 31 H 0.08 1.94 6.43 -2.39 -0.02 1.93 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 34 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 35 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.08 1.11 6.43 -2.39 -0.02 1.10 16 37 H 0.07 0.79 6.43 -2.39 -0.02 0.77 16 38 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 40 H 0.07 1.14 4.81 -2.39 -0.01 1.13 16 41 H 0.08 1.08 6.43 -2.39 -0.02 1.07 16 42 H 0.05 0.93 6.50 -2.39 -0.02 0.92 16 Total: -1.00 -68.35 315.42 4.11 -64.23 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: 0.41 Total: 17.40 kcal Atomic # 6 Polarization: -20.91 SS G_CDS: 3.64 Total: -17.27 kcal Atomic # 7 Polarization: -77.43 SS G_CDS: -1.92 Total: -79.35 kcal Atomic # 8 Polarization: -32.78 SS G_CDS: -0.05 Total: -32.83 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -68.35 4.11 -64.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596632695.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.943 kcal (2) G-P(sol) polarization free energy of solvation -68.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.235 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds