Wall clock time and date at job start Mon Mar 30 2020 06:47:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 13 13 O 1.21285 * 120.00039 * 120.00069 * 12 2 1 14 14 N 1.34780 * 120.00249 * 299.99993 * 12 2 1 15 15 C 1.46502 * 119.99699 * 0.02562 * 14 12 2 16 16 C 1.46500 * 120.00188 * 179.97438 * 14 12 2 17 17 H 1.08998 * 109.46965 * 0.02562 * 16 14 12 18 18 C 1.53005 * 109.47186 * 240.00167 * 16 14 12 19 19 C 1.52989 * 109.46937 * 180.02562 * 18 16 14 20 20 C 1.52996 * 109.47583 * 59.99850 * 19 18 16 21 21 C 1.52997 * 109.47210 * 300.00246 * 20 19 18 22 22 C 1.52993 * 109.47548 * 59.99554 * 21 20 19 23 23 H 1.09007 * 109.47171 * 59.99757 * 22 21 20 24 24 C 1.52997 * 109.47548 * 179.97438 * 22 21 20 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.46966 * 89.99800 * 15 14 12 30 30 H 1.09001 * 109.47307 * 209.99867 * 15 14 12 31 31 H 1.09000 * 109.47042 * 329.99852 * 15 14 12 32 32 H 1.09005 * 109.46580 * 300.00232 * 18 16 14 33 33 H 1.08995 * 109.46781 * 60.00053 * 18 16 14 34 34 H 1.08999 * 109.47464 * 299.99939 * 19 18 16 35 35 H 1.09001 * 109.47314 * 180.02562 * 19 18 16 36 36 H 1.08998 * 109.47826 * 179.97438 * 20 19 18 37 37 H 1.09011 * 109.47198 * 59.99932 * 20 19 18 38 38 H 1.08999 * 109.46778 * 299.99263 * 21 20 19 39 39 H 1.09002 * 109.47504 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47472 * 179.97438 * 24 22 21 41 41 H 1.08995 * 109.47339 * 300.00380 * 24 22 21 42 42 H 1.08998 * 109.46892 * 60.00247 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 0.8640 0.9409 2.5890 16 6 2.1946 -0.9408 3.6508 17 1 2.8002 -1.7971 3.3542 18 6 1.0042 -1.4213 4.4834 19 6 1.5138 -2.1422 5.7329 20 6 2.3637 -1.1805 6.5658 21 6 3.5540 -0.7000 5.7332 22 6 3.0445 0.0210 4.4837 23 1 2.4389 0.8775 4.7799 24 6 4.2348 0.5020 3.6514 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7089 1.1612 -3.4844 29 1 -0.1839 0.6426 2.6225 30 1 1.1217 1.4666 3.5084 31 1 1.0271 1.5996 1.7360 32 1 0.3990 -0.5646 4.7800 33 1 0.3986 -2.1060 3.8899 34 1 2.1193 -2.9987 5.4367 35 1 0.6658 -2.4849 6.3259 36 1 2.7264 -1.6940 7.4562 37 1 1.7582 -0.3239 6.8621 38 1 4.1595 -1.5566 5.4370 39 1 4.1593 -0.0146 6.3264 40 1 3.8718 1.0153 2.7609 41 1 4.8399 1.1872 4.2449 42 1 4.8407 -0.3543 3.3551 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596735727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:23 Heat of formation + Delta-G solvation = -59.482780 kcal Electronic energy + Delta-G solvation = -20147.311662 eV Core-core repulsion = 17319.399329 eV Total energy + Delta-G solvation = -2827.912333 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.87565 -37.77184 -34.46511 -33.71321 -32.40144 -30.82106 -29.20218 -26.60987 -25.96588 -25.02602 -23.09849 -21.69671 -21.04624 -19.41111 -18.47294 -16.42356 -15.72767 -15.59535 -14.88066 -14.63237 -14.41589 -14.24049 -13.77790 -13.22439 -13.15960 -12.80346 -12.51845 -12.20197 -12.18588 -11.86717 -11.75215 -11.45315 -11.20858 -10.99532 -10.97139 -10.83735 -10.67828 -10.46181 -10.37613 -10.24919 -10.15852 -10.08643 -9.87932 -8.90465 -8.51563 -8.22971 -7.92847 -5.98996 -4.01587 3.36091 3.41579 3.48413 3.72561 3.77595 4.50196 4.68445 4.80460 4.90926 5.12811 5.22082 5.34218 5.43217 5.48766 5.54864 5.56851 5.63841 5.73178 5.82696 5.92826 5.94473 5.99878 6.07812 6.10452 6.17262 6.18651 6.25283 6.29284 6.41434 6.50852 6.62897 6.71527 6.91068 6.99450 7.26924 7.53398 7.80329 8.03007 8.17639 8.46090 9.07110 9.30620 9.63663 11.08553 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.036486 B = 0.005495 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.230618 B = 5094.440276 C = 5223.746396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.032 3.968 3 H 0.050 0.950 4 C -0.499 4.499 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.522 3.478 13 O -0.547 6.547 14 N -0.624 5.624 15 C 0.085 3.915 16 C 0.144 3.856 17 H 0.096 0.904 18 C -0.126 4.126 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.112 4.112 22 C -0.098 4.098 23 H 0.069 0.931 24 C -0.143 4.143 25 H 0.027 0.973 26 H 0.091 0.909 27 H 0.025 0.975 28 H 0.260 0.740 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.062 0.938 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.059 0.941 37 H 0.060 0.940 38 H 0.063 0.937 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.048 0.952 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.074 0.798 16.719 16.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.011 3.989 3 H 0.068 0.932 4 C -0.537 4.537 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.313 3.687 13 O -0.423 6.423 14 N -0.358 5.358 15 C -0.059 4.059 16 C 0.040 3.960 17 H 0.114 0.886 18 C -0.165 4.165 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.150 4.150 22 C -0.118 4.118 23 H 0.087 0.913 24 C -0.200 4.200 25 H 0.047 0.953 26 H 0.109 0.891 27 H 0.044 0.956 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.080 0.920 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.067 0.933 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 0.380 0.378 16.475 16.484 hybrid contribution 0.141 -0.302 -0.822 0.887 sum 0.521 0.075 15.653 15.662 Atomic orbital electron populations 1.21972 0.96665 0.99880 1.01563 1.18824 0.94168 0.96583 0.89338 0.93198 1.21164 1.30752 1.12706 0.89082 0.90907 1.24938 0.95180 0.95076 0.99043 1.69870 1.37261 1.23156 1.23411 0.86477 0.79453 0.79264 0.82169 1.20717 1.21329 1.19783 1.22002 0.78183 0.84135 0.84353 1.90506 1.38335 1.27158 1.86295 1.48081 1.52609 1.29471 1.05659 1.21806 0.94150 0.87863 1.02048 1.20949 0.94503 0.95704 0.84885 0.88639 1.21871 0.98090 1.00316 0.96201 1.21495 0.99379 0.98381 0.96185 1.21544 0.97026 0.99147 0.97901 1.21568 0.97458 1.00133 0.95803 1.21444 0.97009 0.98289 0.95039 0.91272 1.21748 0.97348 1.01058 0.99879 0.95345 0.89069 0.95608 0.93054 0.93077 0.92587 0.90298 0.91964 0.91717 0.91884 0.92093 0.92242 0.92139 0.91846 0.92045 0.92180 0.93303 0.92705 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.60 37.16 0.32 -3.01 16 2 C 0.03 0.80 1.83 -92.93 -0.17 0.63 16 3 H 0.05 1.31 7.40 -51.93 -0.38 0.92 16 4 C -0.50 -14.38 8.37 -34.44 -0.29 -14.67 16 5 H 0.07 2.23 6.75 -52.49 -0.35 1.87 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.41 11.32 55.43 0.63 -24.78 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.09 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.52 12.16 7.07 -10.98 -0.08 12.08 16 13 O -0.55 -14.53 14.79 5.55 0.08 -14.45 16 14 N -0.62 -11.24 1.99 -173.92 -0.35 -11.59 16 15 C 0.08 1.27 7.86 59.85 0.47 1.74 16 16 C 0.14 2.23 1.97 -67.93 -0.13 2.09 16 17 H 0.10 1.75 6.90 -51.93 -0.36 1.39 16 18 C -0.13 -1.65 5.20 -26.73 -0.14 -1.79 16 19 C -0.12 -1.25 5.92 -26.74 -0.16 -1.41 16 20 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 21 C -0.11 -1.20 5.20 -26.74 -0.14 -1.34 16 22 C -0.10 -1.27 2.09 -90.62 -0.19 -1.46 16 23 H 0.07 0.84 6.66 -51.92 -0.35 0.49 16 24 C -0.14 -2.03 9.04 37.16 0.34 -1.70 16 25 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.09 2.33 6.07 -51.93 -0.32 2.02 16 27 H 0.03 0.49 4.53 -51.93 -0.24 0.26 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.05 0.73 6.95 -51.93 -0.36 0.37 16 30 H 0.06 0.69 6.43 -51.93 -0.33 0.35 16 31 H 0.08 1.28 6.01 -51.93 -0.31 0.97 16 32 H 0.06 0.75 7.67 -51.93 -0.40 0.35 16 33 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.06 0.55 8.14 -51.92 -0.42 0.13 16 38 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.98 7.60 -51.93 -0.39 0.58 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 316.05 15.07 4.76 4.76 Total: -1.00 -30.69 316.05 -7.47 -38.16 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.16 Total: -0.62 kcal Atomic # 6 Polarization: -8.16 SS G_CDS: -0.42 Total: -8.58 kcal Atomic # 7 Polarization: -36.65 SS G_CDS: 0.28 Total: -36.37 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.08 Total: -14.45 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.69 -7.47 -38.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596735727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.321 kcal (2) G-P(sol) polarization free energy of solvation -30.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.008 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds