Wall clock time and date at job start Mon Mar 30 2020 06:47:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50697 * 109.47466 * 239.99773 * 2 1 3 5 5 H 1.07999 * 120.00055 * 240.00165 * 4 2 1 6 6 C 1.37878 * 119.99687 * 60.00188 * 4 2 1 7 7 N 1.31511 * 120.00458 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99926 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46980 * 89.99582 * 8 6 4 10 10 H 1.48493 * 109.47135 * 209.99651 * 8 6 4 11 11 H 1.48498 * 109.47274 * 330.00048 * 8 6 4 12 12 C 1.50699 * 109.47078 * 119.99793 * 2 1 3 13 13 O 1.21285 * 120.00039 * 120.00069 * 12 2 1 14 14 N 1.34780 * 120.00249 * 299.99993 * 12 2 1 15 15 C 1.46502 * 119.99699 * 0.02562 * 14 12 2 16 16 C 1.46500 * 120.00188 * 179.97438 * 14 12 2 17 17 H 1.08998 * 109.46965 * 0.02562 * 16 14 12 18 18 C 1.53005 * 109.47186 * 240.00167 * 16 14 12 19 19 C 1.52989 * 109.46937 * 180.02562 * 18 16 14 20 20 C 1.52996 * 109.47583 * 59.99850 * 19 18 16 21 21 C 1.52997 * 109.47210 * 300.00246 * 20 19 18 22 22 C 1.52993 * 109.47548 * 59.99554 * 21 20 19 23 23 H 1.09007 * 109.47171 * 59.99757 * 22 21 20 24 24 C 1.52997 * 109.47548 * 179.97438 * 22 21 20 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00191 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00172 * 1 2 3 28 28 H 0.96999 * 120.00480 * 179.97438 * 7 6 4 29 29 H 1.09005 * 109.46966 * 89.99800 * 15 14 12 30 30 H 1.09001 * 109.47307 * 209.99867 * 15 14 12 31 31 H 1.09000 * 109.47042 * 329.99852 * 15 14 12 32 32 H 1.09005 * 109.46580 * 300.00232 * 18 16 14 33 33 H 1.08995 * 109.46781 * 60.00053 * 18 16 14 34 34 H 1.08999 * 109.47464 * 299.99939 * 19 18 16 35 35 H 1.09001 * 109.47314 * 180.02562 * 19 18 16 36 36 H 1.08998 * 109.47826 * 179.97438 * 20 19 18 37 37 H 1.09011 * 109.47198 * 59.99932 * 20 19 18 38 38 H 1.08999 * 109.46778 * 299.99263 * 21 20 19 39 39 H 1.09002 * 109.47504 * 179.97438 * 21 20 19 40 40 H 1.09001 * 109.47472 * 179.97438 * 24 22 21 41 41 H 1.08995 * 109.47339 * 300.00380 * 24 22 21 42 42 H 1.08998 * 109.46892 * 60.00247 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3429 -2.1618 -4.4118 10 1 2.4867 -0.1415 -5.1122 11 1 3.6294 -1.7584 -3.7121 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 0.8640 0.9409 2.5890 16 6 2.1946 -0.9408 3.6508 17 1 2.8002 -1.7971 3.3542 18 6 1.0042 -1.4213 4.4834 19 6 1.5138 -2.1422 5.7329 20 6 2.3637 -1.1805 6.5658 21 6 3.5540 -0.7000 5.7332 22 6 3.0445 0.0210 4.4837 23 1 2.4389 0.8775 4.7799 24 6 4.2348 0.5020 3.6514 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 0.7089 1.1612 -3.4844 29 1 -0.1839 0.6426 2.6225 30 1 1.1217 1.4666 3.5084 31 1 1.0271 1.5996 1.7360 32 1 0.3990 -0.5646 4.7800 33 1 0.3986 -2.1060 3.8899 34 1 2.1193 -2.9987 5.4367 35 1 0.6658 -2.4849 6.3259 36 1 2.7264 -1.6940 7.4562 37 1 1.7582 -0.3239 6.8621 38 1 4.1595 -1.5566 5.4370 39 1 4.1593 -0.0146 6.3264 40 1 3.8718 1.0153 2.7609 41 1 4.8399 1.1872 4.2449 42 1 4.8407 -0.3543 3.3551 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596735727.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:22 Heat of formation + Delta-G solvation = -76.619880 kcal Electronic energy + Delta-G solvation = -20148.054782 eV Core-core repulsion = 17319.399329 eV Total energy + Delta-G solvation = -2828.655453 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.32254 -39.18626 -36.08968 -35.62466 -33.46279 -32.62351 -30.50723 -27.96484 -27.19286 -27.09042 -24.62397 -23.03134 -22.12253 -20.52239 -20.08385 -18.41456 -17.42903 -17.30120 -16.40219 -16.28456 -15.46461 -15.41921 -14.94847 -14.82448 -14.73376 -14.06573 -13.96209 -13.79224 -13.45921 -13.26337 -12.95920 -12.91663 -12.80438 -12.70263 -12.50292 -12.23754 -12.19347 -12.06342 -11.99589 -11.76972 -11.35012 -11.23790 -11.14037 -10.99027 -10.58224 -10.17585 -9.40518 -8.15696 -6.25956 1.38472 1.38821 1.51046 1.94405 2.23338 2.46234 3.13213 3.63417 3.82835 3.96231 4.13943 4.22042 4.24262 4.36076 4.51552 4.52555 4.55129 4.58353 4.71235 4.73144 4.77569 4.86820 4.93079 4.97473 5.00212 5.08134 5.09346 5.17478 5.22160 5.29096 5.30995 5.35860 5.44255 5.49232 5.58760 5.72580 5.82038 5.98683 6.21928 6.63218 6.82857 7.39925 7.54447 8.89961 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.036486 B = 0.005495 C = 0.005359 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 767.230618 B = 5094.440276 C = 5223.746396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.030 3.970 3 H 0.038 0.962 4 C -0.530 4.530 5 H 0.044 0.956 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.274 1.274 10 H -0.272 1.272 11 H -0.281 1.281 12 C 0.518 3.482 13 O -0.593 6.593 14 N -0.612 5.612 15 C 0.076 3.924 16 C 0.139 3.861 17 H 0.057 0.943 18 C -0.120 4.120 19 C -0.114 4.114 20 C -0.113 4.113 21 C -0.109 4.109 22 C -0.091 4.091 23 H 0.091 0.909 24 C -0.141 4.141 25 H 0.014 0.986 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.265 0.735 29 H 0.067 0.933 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.083 0.917 33 H 0.043 0.957 34 H 0.049 0.951 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.082 0.918 40 H 0.032 0.968 41 H 0.075 0.925 42 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.751 1.878 19.019 19.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.009 3.991 3 H 0.056 0.944 4 C -0.569 4.569 5 H 0.062 0.938 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.780 3.220 9 H -0.200 1.200 10 H -0.197 1.197 11 H -0.206 1.206 12 C 0.309 3.691 13 O -0.474 6.474 14 N -0.344 5.344 15 C -0.065 4.065 16 C 0.036 3.964 17 H 0.076 0.924 18 C -0.159 4.159 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.147 4.147 22 C -0.110 4.110 23 H 0.109 0.891 24 C -0.199 4.199 25 H 0.033 0.967 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.113 0.887 31 H 0.084 0.916 32 H 0.102 0.898 33 H 0.062 0.938 34 H 0.068 0.932 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.068 0.932 39 H 0.101 0.899 40 H 0.052 0.948 41 H 0.094 0.906 42 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -0.475 1.494 18.818 18.884 hybrid contribution 0.410 -0.605 -1.501 1.670 sum -0.066 0.890 17.317 17.340 Atomic orbital electron populations 1.21794 0.95134 0.99179 1.02458 1.18723 0.95346 0.95536 0.89534 0.94445 1.21293 1.31547 1.12650 0.91367 0.93810 1.25575 0.95204 0.95760 1.01304 1.69941 1.37173 1.23502 1.24266 0.85621 0.78567 0.78619 0.79225 1.19953 1.19696 1.20588 1.21622 0.78102 0.83619 0.85716 1.90476 1.40544 1.29137 1.87210 1.48007 1.51716 1.29852 1.04836 1.22036 0.94421 0.86584 1.03506 1.21169 0.95763 0.95165 0.84340 0.92420 1.21830 0.96733 1.00827 0.96464 1.21503 1.00195 0.98132 0.95405 1.21531 0.96234 0.99440 0.97813 1.21566 0.98238 0.99917 0.94973 1.21430 0.96051 0.98350 0.95160 0.89121 1.21738 0.98132 1.00471 0.99544 0.96652 0.91226 0.91557 0.92582 0.91471 0.88717 0.91567 0.89835 0.93803 0.93171 0.90123 0.90415 0.90525 0.93162 0.89928 0.94841 0.90587 0.94989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.01 8.60 71.98 0.62 -5.39 16 2 C 0.03 1.55 1.83 -12.29 -0.02 1.53 16 3 H 0.04 2.03 7.40 -2.39 -0.02 2.02 16 4 C -0.53 -31.88 8.37 25.60 0.21 -31.66 16 5 H 0.04 2.84 6.75 -2.91 -0.02 2.82 16 6 C 0.02 1.19 5.30 84.66 0.45 1.64 16 7 N -0.91 -51.92 11.32 21.45 0.24 -51.68 16 8 Si 0.95 46.06 29.54 68.60 2.03 48.09 16 9 H -0.27 -12.86 7.11 99.48 0.71 -12.15 16 10 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 11 H -0.28 -13.80 7.11 99.48 0.71 -13.09 16 12 C 0.52 25.13 7.07 87.66 0.62 25.75 16 13 O -0.59 -33.51 14.79 -3.05 -0.05 -33.56 16 14 N -0.61 -22.00 1.99 -822.56 -1.64 -23.64 16 15 C 0.08 2.12 7.86 127.77 1.00 3.13 16 16 C 0.14 4.24 1.97 44.99 0.09 4.33 16 17 H 0.06 2.22 6.90 -2.39 -0.02 2.21 16 18 C -0.12 -2.91 5.20 30.59 0.16 -2.75 16 19 C -0.11 -2.16 5.92 30.59 0.18 -1.98 16 20 C -0.11 -1.72 5.92 30.59 0.18 -1.53 16 21 C -0.11 -2.03 5.20 30.59 0.16 -1.87 16 22 C -0.09 -2.15 2.09 -10.80 -0.02 -2.17 16 23 H 0.09 1.80 6.66 -2.38 -0.02 1.79 16 24 C -0.14 -3.95 9.04 71.98 0.65 -3.30 16 25 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 26 H 0.07 3.59 6.07 -2.39 -0.01 3.57 16 27 H 0.07 2.50 4.53 -2.38 -0.01 2.49 16 28 H 0.26 14.27 8.31 -92.71 -0.77 13.50 16 29 H 0.07 1.70 6.95 -2.38 -0.02 1.68 16 30 H 0.09 1.94 6.43 -2.39 -0.02 1.92 16 31 H 0.07 2.06 6.01 -2.39 -0.01 2.04 16 32 H 0.08 1.68 7.67 -2.38 -0.02 1.66 16 33 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 38 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.03 1.09 7.60 -2.39 -0.02 1.07 16 41 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.03 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -70.05 316.05 5.84 -64.21 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 0.98 Total: 10.86 kcal Atomic # 6 Polarization: -18.57 SS G_CDS: 4.28 Total: -14.28 kcal Atomic # 7 Polarization: -73.92 SS G_CDS: -1.40 Total: -75.32 kcal Atomic # 8 Polarization: -33.51 SS G_CDS: -0.05 Total: -33.56 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -70.05 5.84 -64.21 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596735727.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.408 kcal (2) G-P(sol) polarization free energy of solvation -70.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds