Wall clock time and date at job start Mon Mar 30 2020 06:47:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50703 * 109.46747 * 240.00334 * 2 1 3 5 5 H 1.08001 * 120.00037 * 239.99519 * 4 2 1 6 6 C 1.37875 * 120.00214 * 60.00163 * 4 2 1 7 7 N 1.31520 * 119.99609 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47001 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47188 * 120.00103 * 8 6 4 11 11 H 1.48497 * 109.47104 * 240.00206 * 8 6 4 12 12 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 13 13 O 1.21283 * 119.99803 * 119.99700 * 12 2 1 14 14 N 1.34777 * 119.99675 * 300.27576 * 12 2 1 15 15 C 1.46496 * 120.00345 * 359.72090 * 14 12 2 16 16 C 1.46497 * 119.99525 * 179.72583 * 14 12 2 17 17 H 1.08996 * 109.47805 * 359.97438 * 16 14 12 18 18 C 1.53007 * 109.47236 * 119.99976 * 16 14 12 19 19 C 1.52998 * 109.47442 * 179.97438 * 18 16 14 20 20 C 1.52993 * 109.47135 * 300.00094 * 19 18 16 21 21 C 1.53001 * 109.47313 * 59.99816 * 20 19 18 22 22 C 1.53001 * 109.47063 * 239.99409 * 16 14 12 23 23 H 1.08998 * 109.47418 * 300.00350 * 22 16 14 24 24 C 1.53001 * 109.46912 * 60.00358 * 22 16 14 25 25 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 27 27 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 28 28 H 0.97006 * 119.99301 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.47115 * 90.00316 * 15 14 12 30 30 H 1.08995 * 109.47364 * 210.00706 * 15 14 12 31 31 H 1.09002 * 109.47090 * 330.00257 * 15 14 12 32 32 H 1.09011 * 109.46614 * 299.99781 * 18 16 14 33 33 H 1.08996 * 109.46839 * 59.99267 * 18 16 14 34 34 H 1.08997 * 109.47243 * 179.97438 * 19 18 16 35 35 H 1.09007 * 109.47079 * 59.99930 * 19 18 16 36 36 H 1.08998 * 109.47052 * 299.99786 * 20 19 18 37 37 H 1.09003 * 109.47174 * 179.97438 * 20 19 18 38 38 H 1.09005 * 109.47285 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.47086 * 59.99991 * 21 20 19 40 40 H 1.09007 * 109.47032 * 59.99882 * 24 22 16 41 41 H 1.08995 * 109.47152 * 179.97438 * 24 22 16 42 42 H 1.08998 * 109.47208 * 300.00312 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3223 -1.1193 -4.0081 9 1 3.1471 -2.2862 -3.6040 10 1 1.1676 -1.5863 -4.8166 11 1 3.1471 -0.1856 -4.8161 12 6 2.0323 -0.7105 1.2304 13 8 2.7295 -1.6966 1.1190 14 7 1.7021 -0.2534 2.4545 15 6 0.8599 0.9377 2.5891 16 6 2.1855 -0.9476 3.6505 17 1 2.7914 -1.8037 3.3539 18 6 3.0327 0.0113 4.4895 19 6 3.5370 -0.7135 5.7389 20 6 2.3433 -1.1958 6.5655 21 6 1.4961 -2.1547 5.7267 22 6 0.9920 -1.4302 4.4774 23 1 0.3857 -0.5744 4.7742 24 6 0.1448 -2.3891 3.6386 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 0.7089 1.1616 -3.4844 29 1 -0.1883 0.6403 2.6175 30 1 1.1144 1.4604 3.5110 31 1 1.0271 1.5988 1.7387 32 1 3.8830 0.3551 3.9004 33 1 2.4263 0.8671 4.7861 34 1 4.1409 -0.0305 6.3363 35 1 4.1433 -1.5696 5.4425 36 1 1.7371 -0.3398 6.8619 37 1 2.7026 -1.7126 7.4555 38 1 0.6454 -2.4979 6.3154 39 1 2.1023 -3.0107 5.4303 40 1 0.7512 -3.2450 3.3418 41 1 -0.7051 -2.7333 4.2277 42 1 -0.2148 -1.8727 2.7486 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596735730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:28 Heat of formation + Delta-G solvation = -59.547117 kcal Electronic energy + Delta-G solvation = -20179.282280 eV Core-core repulsion = 17351.367157 eV Total energy + Delta-G solvation = -2827.915123 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.87862 -37.76821 -34.46840 -33.70802 -32.40178 -30.83169 -29.19849 -26.63528 -25.92410 -25.02352 -23.15812 -21.60730 -21.08180 -19.40880 -18.47847 -16.41645 -15.76095 -15.59802 -14.76034 -14.70298 -14.41749 -14.19408 -13.91490 -13.24400 -13.08124 -12.78837 -12.53286 -12.28015 -12.08776 -11.87749 -11.75427 -11.45270 -11.15873 -11.03552 -10.97571 -10.82058 -10.66383 -10.43909 -10.39764 -10.26803 -10.16761 -10.05554 -9.88222 -8.89337 -8.51757 -8.23203 -7.93165 -5.99269 -4.01701 3.34408 3.41774 3.50090 3.72333 3.77918 4.50238 4.68638 4.80631 4.91084 5.13162 5.22439 5.34040 5.42642 5.49289 5.53003 5.60150 5.61661 5.74944 5.84277 5.90958 5.95790 5.99349 6.08198 6.08467 6.17644 6.18693 6.27002 6.29692 6.41732 6.51695 6.63655 6.71777 6.90586 6.99323 7.26977 7.53355 7.80265 8.03015 8.17613 8.45992 9.07441 9.30641 9.63626 11.08346 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.037079 B = 0.005481 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.969898 B = 5106.965283 C = 5185.188610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.031 3.969 3 H 0.050 0.950 4 C -0.497 4.497 5 H 0.073 0.927 6 C 0.057 3.943 7 N -0.897 5.897 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.522 3.478 13 O -0.547 6.547 14 N -0.623 5.623 15 C 0.084 3.916 16 C 0.144 3.856 17 H 0.096 0.904 18 C -0.128 4.128 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.112 4.112 22 C -0.097 4.097 23 H 0.068 0.932 24 C -0.143 4.143 25 H 0.028 0.972 26 H 0.025 0.975 27 H 0.091 0.909 28 H 0.259 0.741 29 H 0.051 0.949 30 H 0.055 0.945 31 H 0.078 0.922 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.061 0.939 39 H 0.063 0.937 40 H 0.053 0.947 41 H 0.047 0.953 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.092 -0.042 16.725 16.761 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.010 3.990 3 H 0.068 0.932 4 C -0.536 4.536 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.313 3.687 13 O -0.423 6.423 14 N -0.358 5.358 15 C -0.059 4.059 16 C 0.039 3.961 17 H 0.114 0.886 18 C -0.166 4.166 19 C -0.154 4.154 20 C -0.156 4.156 21 C -0.150 4.150 22 C -0.116 4.116 23 H 0.086 0.914 24 C -0.201 4.201 25 H 0.047 0.953 26 H 0.044 0.956 27 H 0.109 0.891 28 H 0.069 0.931 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.072 0.928 41 H 0.066 0.934 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -0.788 -0.469 16.485 16.510 hybrid contribution 0.170 -0.265 -0.827 0.885 sum -0.618 -0.733 15.657 15.687 Atomic orbital electron populations 1.21970 0.96627 0.99870 1.01560 1.18832 0.94189 0.96598 0.89357 0.93207 1.21208 1.30640 1.12685 0.89066 0.90850 1.24943 0.95189 0.95096 0.99059 1.69891 1.37341 1.23170 1.23297 0.86426 0.78611 0.79805 0.82592 1.19600 1.21098 1.21085 1.22000 0.78196 0.84130 0.84350 1.90507 1.38367 1.27122 1.86287 1.48076 1.52705 1.29373 1.05661 1.21808 0.94224 0.87831 1.02024 1.20948 0.94387 0.95825 0.84893 0.88639 1.21891 0.99855 0.98627 0.96267 1.21492 0.97528 1.00217 0.96170 1.21544 0.96968 0.99199 0.97906 1.21569 0.99312 0.98304 0.95821 1.21421 0.96786 0.98448 0.94952 0.91366 1.21756 0.99021 0.99378 0.99908 0.95330 0.95595 0.89092 0.93120 0.93048 0.92596 0.90306 0.91680 0.91879 0.92084 0.91870 0.92133 0.92244 0.92053 0.91862 0.92760 0.93354 0.92069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.30 8.60 37.16 0.32 -2.98 16 2 C 0.03 0.79 1.83 -92.92 -0.17 0.62 16 3 H 0.05 1.31 7.41 -51.93 -0.38 0.92 16 4 C -0.50 -14.34 8.37 -34.44 -0.29 -14.63 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.89 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.40 11.32 55.43 0.63 -24.78 16 8 Si 0.90 22.10 29.54 -169.99 -5.02 17.08 16 9 H -0.27 -6.76 7.11 56.52 0.40 -6.36 16 10 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 C 0.52 12.15 7.07 -10.98 -0.08 12.07 16 13 O -0.55 -14.53 14.79 5.55 0.08 -14.45 16 14 N -0.62 -11.24 2.00 -173.94 -0.35 -11.58 16 15 C 0.08 1.27 7.85 59.84 0.47 1.74 16 16 C 0.14 2.23 1.97 -67.93 -0.13 2.09 16 17 H 0.10 1.75 6.90 -51.93 -0.36 1.39 16 18 C -0.13 -1.65 5.18 -26.73 -0.14 -1.79 16 19 C -0.12 -1.24 5.92 -26.74 -0.16 -1.40 16 20 C -0.12 -1.14 5.92 -26.73 -0.16 -1.30 16 21 C -0.11 -1.21 5.20 -26.75 -0.14 -1.35 16 22 C -0.10 -1.26 2.11 -90.64 -0.19 -1.45 16 23 H 0.07 0.84 7.67 -51.93 -0.40 0.44 16 24 C -0.14 -2.07 9.04 37.16 0.34 -1.73 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.03 0.49 4.51 -51.93 -0.23 0.26 16 27 H 0.09 2.32 6.07 -51.93 -0.32 2.01 16 28 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 29 H 0.05 0.73 6.94 -51.93 -0.36 0.37 16 30 H 0.06 0.68 6.43 -51.93 -0.33 0.35 16 31 H 0.08 1.28 6.02 -51.93 -0.31 0.96 16 32 H 0.06 0.93 8.14 -51.92 -0.42 0.50 16 33 H 0.06 0.75 6.66 -51.93 -0.35 0.40 16 34 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.71 8.14 -51.92 -0.42 0.28 16 36 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 1.02 7.60 -51.93 -0.39 0.62 16 LS Contribution 316.04 15.07 4.76 4.76 Total: -1.00 -30.70 316.04 -7.48 -38.18 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -7.16 Total: -0.63 kcal Atomic # 6 Polarization: -8.17 SS G_CDS: -0.42 Total: -8.59 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.28 Total: -36.36 kcal Atomic # 8 Polarization: -14.53 SS G_CDS: 0.08 Total: -14.45 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -30.70 -7.48 -38.18 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596735730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.368 kcal (2) G-P(sol) polarization free energy of solvation -30.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.071 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.179 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds