Wall clock time and date at job start Mon Mar 30 2020 06:47:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08998 * 109.47126 * 2 1 4 4 C 1.50703 * 109.46747 * 240.00334 * 2 1 3 5 5 H 1.08001 * 120.00037 * 239.99519 * 4 2 1 6 6 C 1.37875 * 120.00214 * 60.00163 * 4 2 1 7 7 N 1.31520 * 119.99609 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00201 * 179.97438 * 6 4 2 9 9 H 1.48496 * 109.47001 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.47188 * 120.00103 * 8 6 4 11 11 H 1.48497 * 109.47104 * 240.00206 * 8 6 4 12 12 C 1.50700 * 109.47092 * 120.00550 * 2 1 3 13 13 O 1.21283 * 119.99803 * 119.99700 * 12 2 1 14 14 N 1.34777 * 119.99675 * 300.27576 * 12 2 1 15 15 C 1.46496 * 120.00345 * 359.72090 * 14 12 2 16 16 C 1.46497 * 119.99525 * 179.72583 * 14 12 2 17 17 H 1.08996 * 109.47805 * 359.97438 * 16 14 12 18 18 C 1.53007 * 109.47236 * 119.99976 * 16 14 12 19 19 C 1.52998 * 109.47442 * 179.97438 * 18 16 14 20 20 C 1.52993 * 109.47135 * 300.00094 * 19 18 16 21 21 C 1.53001 * 109.47313 * 59.99816 * 20 19 18 22 22 C 1.53001 * 109.47063 * 239.99409 * 16 14 12 23 23 H 1.08998 * 109.47418 * 300.00350 * 22 16 14 24 24 C 1.53001 * 109.46912 * 60.00358 * 22 16 14 25 25 H 1.09006 * 109.47458 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47239 * 299.99568 * 1 2 3 27 27 H 1.09005 * 109.47323 * 59.99789 * 1 2 3 28 28 H 0.97006 * 119.99301 * 180.02562 * 7 6 4 29 29 H 1.08997 * 109.47115 * 90.00316 * 15 14 12 30 30 H 1.08995 * 109.47364 * 210.00706 * 15 14 12 31 31 H 1.09002 * 109.47090 * 330.00257 * 15 14 12 32 32 H 1.09011 * 109.46614 * 299.99781 * 18 16 14 33 33 H 1.08996 * 109.46839 * 59.99267 * 18 16 14 34 34 H 1.08997 * 109.47243 * 179.97438 * 19 18 16 35 35 H 1.09007 * 109.47079 * 59.99930 * 19 18 16 36 36 H 1.08998 * 109.47052 * 299.99786 * 20 19 18 37 37 H 1.09003 * 109.47174 * 179.97438 * 20 19 18 38 38 H 1.09005 * 109.47285 * 180.02562 * 21 20 19 39 39 H 1.08998 * 109.47086 * 59.99991 * 21 20 19 40 40 H 1.09007 * 109.47032 * 59.99882 * 24 22 16 41 41 H 1.08995 * 109.47152 * 179.97438 * 24 22 16 42 42 H 1.08998 * 109.47208 * 300.00312 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0322 -0.7104 -1.2306 5 1 2.6532 -1.5885 -1.1316 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8304 -2.6033 8 14 2.3223 -1.1193 -4.0081 9 1 3.1471 -2.2862 -3.6040 10 1 1.1676 -1.5863 -4.8166 11 1 3.1471 -0.1856 -4.8161 12 6 2.0323 -0.7105 1.2304 13 8 2.7295 -1.6966 1.1190 14 7 1.7021 -0.2534 2.4545 15 6 0.8599 0.9377 2.5891 16 6 2.1855 -0.9476 3.6505 17 1 2.7914 -1.8037 3.3539 18 6 3.0327 0.0113 4.4895 19 6 3.5370 -0.7135 5.7389 20 6 2.3433 -1.1958 6.5655 21 6 1.4961 -2.1547 5.7267 22 6 0.9920 -1.4302 4.4774 23 1 0.3857 -0.5744 4.7742 24 6 0.1448 -2.3891 3.6386 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 0.7089 1.1616 -3.4844 29 1 -0.1883 0.6403 2.6175 30 1 1.1144 1.4604 3.5110 31 1 1.0271 1.5988 1.7387 32 1 3.8830 0.3551 3.9004 33 1 2.4263 0.8671 4.7861 34 1 4.1409 -0.0305 6.3363 35 1 4.1433 -1.5696 5.4425 36 1 1.7371 -0.3398 6.8619 37 1 2.7026 -1.7126 7.4555 38 1 0.6454 -2.4979 6.3154 39 1 2.1023 -3.0107 5.4303 40 1 0.7512 -3.2450 3.3418 41 1 -0.7051 -2.7333 4.2277 42 1 -0.2148 -1.8727 2.7486 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596735730.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:47:27 Heat of formation + Delta-G solvation = -76.709932 kcal Electronic energy + Delta-G solvation = -20180.026515 eV Core-core repulsion = 17351.367157 eV Total energy + Delta-G solvation = -2828.659358 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.32625 -39.18080 -36.09232 -35.62337 -33.44907 -32.64595 -30.49972 -27.99852 -27.15503 -27.07194 -24.69292 -22.94091 -22.15501 -20.52020 -20.08929 -18.41528 -17.43971 -17.30446 -16.45502 -16.15337 -15.56061 -15.36058 -15.02866 -14.90373 -14.59728 -14.17976 -13.88182 -13.77351 -13.45004 -13.27187 -12.96221 -12.91839 -12.79425 -12.70129 -12.47406 -12.24230 -12.19720 -12.04012 -11.98939 -11.78627 -11.36414 -11.22464 -11.15484 -10.96714 -10.58364 -10.17232 -9.40877 -8.15961 -6.26042 1.37054 1.38694 1.52509 1.94367 2.23567 2.46245 3.13001 3.63780 3.83159 3.96352 4.13953 4.21427 4.25164 4.36648 4.48871 4.53837 4.55618 4.59995 4.71133 4.73525 4.77602 4.86970 4.92547 4.98432 5.00406 5.07529 5.08941 5.18229 5.22336 5.29717 5.31387 5.36492 5.44504 5.48871 5.59253 5.72727 5.82371 5.98651 6.21977 6.63348 6.83042 7.39961 7.54530 8.89907 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.037079 B = 0.005481 C = 0.005399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.969898 B = 5106.965283 C = 5185.188610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.029 3.971 3 H 0.038 0.962 4 C -0.529 4.529 5 H 0.043 0.957 6 C 0.020 3.980 7 N -0.910 5.910 8 Si 0.954 3.046 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.272 1.272 12 C 0.518 3.482 13 O -0.593 6.593 14 N -0.612 5.612 15 C 0.076 3.924 16 C 0.139 3.861 17 H 0.057 0.943 18 C -0.122 4.122 19 C -0.114 4.114 20 C -0.113 4.113 21 C -0.109 4.109 22 C -0.089 4.089 23 H 0.089 0.911 24 C -0.142 4.142 25 H 0.014 0.986 26 H 0.066 0.934 27 H 0.068 0.932 28 H 0.265 0.735 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.049 0.951 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.082 0.918 39 H 0.049 0.951 40 H 0.030 0.970 41 H 0.074 0.926 42 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.083 0.962 19.007 19.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.008 3.992 3 H 0.056 0.944 4 C -0.567 4.567 5 H 0.062 0.938 6 C -0.179 4.179 7 N -0.549 5.549 8 Si 0.780 3.220 9 H -0.207 1.207 10 H -0.198 1.198 11 H -0.198 1.198 12 C 0.309 3.691 13 O -0.474 6.474 14 N -0.344 5.344 15 C -0.066 4.066 16 C 0.036 3.964 17 H 0.076 0.924 18 C -0.160 4.160 19 C -0.152 4.152 20 C -0.150 4.150 21 C -0.147 4.147 22 C -0.108 4.108 23 H 0.107 0.893 24 C -0.199 4.199 25 H 0.033 0.967 26 H 0.084 0.916 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.085 0.915 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.099 0.901 35 H 0.068 0.932 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.100 0.900 39 H 0.068 0.932 40 H 0.049 0.951 41 H 0.093 0.907 42 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -1.806 0.575 18.808 18.904 hybrid contribution 0.475 -0.555 -1.502 1.670 sum -1.332 0.020 17.306 17.358 Atomic orbital electron populations 1.21780 0.95065 0.99148 1.02397 1.18734 0.95391 0.95542 0.89545 0.94447 1.21321 1.31449 1.12597 0.91358 0.93834 1.25579 0.95212 0.95774 1.01316 1.69959 1.37244 1.23514 1.24197 0.85565 0.78398 0.78573 0.79480 1.20724 1.19785 1.19765 1.21621 0.78114 0.83607 0.85716 1.90477 1.40603 1.29086 1.87205 1.48001 1.51798 1.29768 1.04833 1.22040 0.94459 0.86537 1.03545 1.21168 0.95695 0.95235 0.84350 0.92433 1.21856 0.98917 0.98753 0.96509 1.21501 0.98321 0.99981 0.95396 1.21531 0.96169 0.99502 0.97816 1.21567 1.00155 0.98022 0.94999 1.21403 0.95401 0.98925 0.95085 0.89258 1.21745 0.99858 0.98723 0.99585 0.96655 0.91589 0.91288 0.92599 0.91534 0.88649 0.91543 0.93715 0.89688 0.90075 0.93167 0.90516 0.90426 0.89981 0.93190 0.95071 0.90684 0.94668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.91 8.60 71.98 0.62 -5.30 16 2 C 0.03 1.51 1.83 -12.29 -0.02 1.49 16 3 H 0.04 2.03 7.41 -2.39 -0.02 2.01 16 4 C -0.53 -31.79 8.37 25.60 0.21 -31.58 16 5 H 0.04 2.83 6.75 -2.91 -0.02 2.81 16 6 C 0.02 1.16 5.30 84.65 0.45 1.61 16 7 N -0.91 -51.91 11.32 21.45 0.24 -51.67 16 8 Si 0.95 46.08 29.54 68.60 2.03 48.10 16 9 H -0.28 -14.01 7.11 99.48 0.71 -13.30 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 12 C 0.52 25.12 7.07 87.66 0.62 25.74 16 13 O -0.59 -33.53 14.79 -3.04 -0.04 -33.58 16 14 N -0.61 -21.98 2.00 -822.61 -1.64 -23.62 16 15 C 0.08 2.11 7.85 127.77 1.00 3.12 16 16 C 0.14 4.24 1.97 44.99 0.09 4.33 16 17 H 0.06 2.22 6.90 -2.39 -0.02 2.20 16 18 C -0.12 -2.93 5.18 30.60 0.16 -2.77 16 19 C -0.11 -2.14 5.92 30.59 0.18 -1.96 16 20 C -0.11 -1.72 5.92 30.59 0.18 -1.54 16 21 C -0.11 -2.06 5.20 30.58 0.16 -1.90 16 22 C -0.09 -2.12 2.11 -10.81 -0.02 -2.14 16 23 H 0.09 1.81 7.67 -2.39 -0.02 1.79 16 24 C -0.14 -3.98 9.04 71.98 0.65 -3.33 16 25 H 0.01 0.71 8.14 -2.38 -0.02 0.69 16 26 H 0.07 2.48 4.51 -2.38 -0.01 2.47 16 27 H 0.07 3.55 6.07 -2.38 -0.01 3.54 16 28 H 0.26 14.22 8.31 -92.70 -0.77 13.45 16 29 H 0.07 1.69 6.94 -2.39 -0.02 1.67 16 30 H 0.10 1.94 6.43 -2.39 -0.02 1.92 16 31 H 0.07 2.06 6.02 -2.39 -0.01 2.04 16 32 H 0.04 1.25 8.14 -2.38 -0.02 1.23 16 33 H 0.08 1.67 6.66 -2.39 -0.02 1.65 16 34 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 35 H 0.05 1.07 8.14 -2.38 -0.02 1.05 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.08 1.25 8.14 -2.38 -0.02 1.24 16 39 H 0.05 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.03 0.99 8.14 -2.38 -0.02 0.97 16 41 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.03 1.15 7.60 -2.39 -0.02 1.13 16 Total: -1.00 -70.13 316.04 5.84 -64.29 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: 0.98 Total: 10.70 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: 4.28 Total: -14.23 kcal Atomic # 7 Polarization: -73.89 SS G_CDS: -1.40 Total: -75.29 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -0.04 Total: -33.58 kcal Atomic # 14 Polarization: 46.08 SS G_CDS: 2.03 Total: 48.10 kcal Total: -70.13 5.84 -64.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596735730.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.422 kcal (2) G-P(sol) polarization free energy of solvation -70.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.710 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds