Wall clock time and date at job start Mon Mar 30 2020 06:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47256 * 90.00491 * 8 6 4 10 10 H 1.48506 * 109.46930 * 210.00332 * 8 6 4 11 11 H 1.48499 * 109.47104 * 330.00193 * 8 6 4 12 12 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 13 13 O 1.21281 * 119.99598 * 119.99987 * 12 2 1 14 14 N 1.34776 * 120.00175 * 300.00467 * 12 2 1 15 15 C 1.46503 * 119.99773 * 359.97438 * 14 12 2 16 16 C 1.46500 * 119.99845 * 180.02562 * 14 12 2 17 17 H 1.08995 * 109.47311 * 359.97438 * 16 14 12 18 18 C 1.53007 * 109.47127 * 119.99575 * 16 14 12 19 19 C 1.52997 * 109.47211 * 179.97438 * 18 16 14 20 20 C 1.53001 * 109.46957 * 300.00519 * 19 18 16 21 21 C 1.52990 * 109.47786 * 59.99789 * 20 19 18 22 22 H 1.09001 * 109.47304 * 59.99583 * 21 20 19 23 23 C 1.52996 * 109.47549 * 180.02562 * 21 20 19 24 24 C 1.53004 * 109.46743 * 239.99343 * 16 14 12 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 28 28 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46586 * 90.00521 * 15 14 12 30 30 H 1.09004 * 109.46876 * 210.00340 * 15 14 12 31 31 H 1.08998 * 109.47192 * 330.00289 * 15 14 12 32 32 H 1.09000 * 109.46608 * 299.99982 * 18 16 14 33 33 H 1.09000 * 109.46876 * 59.99488 * 18 16 14 34 34 H 1.08996 * 109.47479 * 180.02562 * 19 18 16 35 35 H 1.09001 * 109.46601 * 59.99997 * 19 18 16 36 36 H 1.09001 * 109.47039 * 299.99210 * 20 19 18 37 37 H 1.09001 * 109.46687 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47770 * 179.97438 * 23 21 20 39 39 H 1.09004 * 109.46868 * 299.99848 * 23 21 20 40 40 H 1.09001 * 109.47336 * 59.99385 * 23 21 20 41 41 H 1.08995 * 109.47150 * 300.00017 * 24 16 14 42 42 H 1.08996 * 109.46886 * 60.00043 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6292 -1.7582 -3.7122 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4546 15 6 0.8648 0.9414 2.5890 16 6 2.1956 -0.9404 3.6507 17 1 2.8011 -1.7967 3.3540 18 6 3.0454 0.0217 4.4833 19 6 3.5554 -0.6990 5.7328 20 6 2.3654 -1.1799 6.5656 21 6 1.5156 -2.1419 5.7331 22 1 2.1214 -2.9983 5.4367 23 6 0.3253 -2.6222 6.5657 24 6 1.0058 -1.4216 4.4838 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 0.7092 1.1618 -3.4843 29 1 -0.1833 0.6437 2.6222 30 1 1.1227 1.4666 3.5087 31 1 1.0286 1.6001 1.7362 32 1 3.8928 0.3646 3.8898 33 1 2.4395 0.8779 4.7800 34 1 4.1604 -0.0135 6.3262 35 1 4.1611 -1.5554 5.4364 36 1 1.7596 -0.3235 6.8621 37 1 2.7288 -1.6930 7.4560 38 1 -0.2804 -3.3073 5.9725 39 1 0.6884 -3.1357 7.4561 40 1 -0.2803 -1.7657 6.8618 41 1 0.4000 -0.5654 4.7804 42 1 0.4005 -2.1069 3.8906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596760693.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:21 Heat of formation + Delta-G solvation = -61.665670 kcal Electronic energy + Delta-G solvation = -19831.536882 eV Core-core repulsion = 17003.529892 eV Total energy + Delta-G solvation = -2828.006990 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.75505 -37.92522 -34.67442 -33.77711 -32.27117 -30.82496 -29.09676 -26.41955 -26.39513 -25.02582 -23.17788 -21.94002 -20.79977 -19.51571 -18.37878 -16.38868 -15.76094 -15.57118 -15.02426 -14.62734 -14.39356 -14.32913 -13.89112 -13.31318 -13.04391 -13.00057 -12.49947 -12.40688 -12.18212 -11.84941 -11.83122 -11.55750 -11.19035 -10.98748 -10.97213 -10.86968 -10.69262 -10.52094 -10.45287 -10.24048 -10.18168 -10.09627 -9.88679 -8.90635 -8.52288 -8.23635 -7.96132 -5.99062 -4.01680 3.36197 3.41616 3.48448 3.70244 3.76170 4.50160 4.64948 4.77868 4.86375 5.10266 5.14648 5.34089 5.38475 5.43917 5.54351 5.59062 5.61691 5.67175 5.69726 5.79355 5.88515 5.92935 5.97240 6.00932 6.15516 6.16027 6.21188 6.24969 6.33510 6.46147 6.57426 6.71285 6.90839 6.99102 7.25604 7.53114 7.80075 8.02572 8.16937 8.45324 9.06952 9.29019 9.63506 11.08532 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.037611 B = 0.004983 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.288844 B = 5618.305824 C = 5704.415064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.032 3.968 3 H 0.051 0.949 4 C -0.499 4.499 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.521 3.479 13 O -0.547 6.547 14 N -0.626 5.626 15 C 0.085 3.915 16 C 0.138 3.862 17 H 0.095 0.905 18 C -0.127 4.127 19 C -0.116 4.116 20 C -0.113 4.113 21 C -0.091 4.091 22 H 0.070 0.930 23 C -0.145 4.145 24 C -0.119 4.119 25 H 0.091 0.909 26 H 0.028 0.972 27 H 0.025 0.975 28 H 0.260 0.740 29 H 0.051 0.949 30 H 0.056 0.944 31 H 0.079 0.921 32 H 0.064 0.936 33 H 0.063 0.937 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.054 0.946 39 H 0.052 0.948 40 H 0.053 0.947 41 H 0.062 0.938 42 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.034 -0.033 17.592 17.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.011 3.989 3 H 0.069 0.931 4 C -0.537 4.537 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.312 3.688 13 O -0.424 6.424 14 N -0.361 5.361 15 C -0.059 4.059 16 C 0.035 3.965 17 H 0.113 0.887 18 C -0.166 4.166 19 C -0.154 4.154 20 C -0.150 4.150 21 C -0.110 4.110 22 H 0.089 0.911 23 C -0.202 4.202 24 C -0.158 4.158 25 H 0.109 0.891 26 H 0.047 0.953 27 H 0.044 0.956 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.083 0.917 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.082 0.918 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.733 -0.450 17.351 17.373 hybrid contribution 0.156 -0.295 -0.820 0.886 sum -0.577 -0.745 16.531 16.558 Atomic orbital electron populations 1.21967 0.96618 0.99895 1.01567 1.18831 0.94202 0.96611 0.89289 0.93131 1.21166 1.30771 1.12720 0.89079 0.90900 1.24941 0.95177 0.95080 0.99050 1.69874 1.37290 1.23116 1.23421 0.86470 0.79454 0.79256 0.82137 1.20710 1.21319 1.19775 1.22042 0.78184 0.84137 0.84405 1.90505 1.38364 1.27177 1.86310 1.48123 1.52760 1.29522 1.05694 1.21810 0.94173 0.87794 1.02073 1.20908 0.94771 0.95944 0.84925 0.88669 1.21884 0.99817 0.98601 0.96253 1.21491 0.97531 1.00240 0.96164 1.21601 0.96708 0.98933 0.97787 1.21100 0.96624 0.98199 0.95067 0.91116 1.21811 0.97930 1.00961 0.99545 1.21913 0.97986 1.00185 0.95690 0.89050 0.95328 0.95610 0.93047 0.93047 0.92559 0.90264 0.91711 0.91878 0.92013 0.91848 0.92081 0.92228 0.92692 0.92904 0.92822 0.91936 0.91736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.33 8.60 37.16 0.32 -3.01 16 2 C 0.03 0.80 1.83 -92.92 -0.17 0.63 16 3 H 0.05 1.33 7.40 -51.93 -0.38 0.95 16 4 C -0.50 -14.45 8.37 -34.44 -0.29 -14.74 16 5 H 0.07 2.24 6.75 -52.49 -0.35 1.88 16 6 C 0.06 1.63 5.30 -17.82 -0.09 1.54 16 7 N -0.90 -25.45 11.32 55.43 0.63 -24.82 16 8 Si 0.90 22.14 29.54 -169.99 -5.02 17.12 16 9 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 C 0.52 12.32 7.07 -10.99 -0.08 12.24 16 13 O -0.55 -14.73 14.79 5.56 0.08 -14.65 16 14 N -0.63 -11.50 2.76 -173.92 -0.48 -11.98 16 15 C 0.08 1.28 7.86 59.85 0.47 1.75 16 16 C 0.14 2.17 2.52 -67.93 -0.17 2.00 16 17 H 0.10 1.75 6.90 -51.93 -0.36 1.39 16 18 C -0.13 -1.64 5.18 -26.73 -0.14 -1.78 16 19 C -0.12 -1.24 5.92 -26.73 -0.16 -1.40 16 20 C -0.11 -1.09 5.20 -26.74 -0.14 -1.23 16 21 C -0.09 -0.98 2.72 -90.65 -0.25 -1.23 16 22 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 23 C -0.15 -1.35 9.19 37.16 0.34 -1.01 16 24 C -0.12 -1.56 4.48 -26.75 -0.12 -1.68 16 25 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 26 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.03 0.50 4.53 -51.93 -0.24 0.26 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.70 16 29 H 0.05 0.74 6.95 -51.93 -0.36 0.38 16 30 H 0.06 0.69 6.42 -51.93 -0.33 0.36 16 31 H 0.08 1.29 6.01 -51.93 -0.31 0.98 16 32 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 33 H 0.06 0.75 6.66 -51.93 -0.35 0.40 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.76 7.67 -51.93 -0.40 0.36 16 42 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 317.24 15.07 4.78 4.78 Total: -1.00 -30.96 317.24 -7.67 -38.63 By element: Atomic # 1 Polarization: 6.02 SS G_CDS: -7.18 Total: -1.16 kcal Atomic # 6 Polarization: -7.44 SS G_CDS: -0.47 Total: -7.92 kcal Atomic # 7 Polarization: -36.95 SS G_CDS: 0.15 Total: -36.80 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.08 Total: -14.65 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -30.96 -7.67 -38.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596760693.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.035 kcal (2) G-P(sol) polarization free energy of solvation -30.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.666 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds