Wall clock time and date at job start Mon Mar 30 2020 06:58:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 C 1.50699 * 109.47078 * 240.00207 * 2 1 3 5 5 H 1.08000 * 119.99792 * 239.99917 * 4 2 1 6 6 C 1.37878 * 119.99902 * 59.99463 * 4 2 1 7 7 N 1.31515 * 120.00126 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99745 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47256 * 90.00491 * 8 6 4 10 10 H 1.48506 * 109.46930 * 210.00332 * 8 6 4 11 11 H 1.48499 * 109.47104 * 330.00193 * 8 6 4 12 12 C 1.50701 * 109.47212 * 119.99998 * 2 1 3 13 13 O 1.21281 * 119.99598 * 119.99987 * 12 2 1 14 14 N 1.34776 * 120.00175 * 300.00467 * 12 2 1 15 15 C 1.46503 * 119.99773 * 359.97438 * 14 12 2 16 16 C 1.46500 * 119.99845 * 180.02562 * 14 12 2 17 17 H 1.08995 * 109.47311 * 359.97438 * 16 14 12 18 18 C 1.53007 * 109.47127 * 119.99575 * 16 14 12 19 19 C 1.52997 * 109.47211 * 179.97438 * 18 16 14 20 20 C 1.53001 * 109.46957 * 300.00519 * 19 18 16 21 21 C 1.52990 * 109.47786 * 59.99789 * 20 19 18 22 22 H 1.09001 * 109.47304 * 59.99583 * 21 20 19 23 23 C 1.52996 * 109.47549 * 180.02562 * 21 20 19 24 24 C 1.53004 * 109.46743 * 239.99343 * 16 14 12 25 25 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 28 28 H 0.96999 * 120.00073 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.46586 * 90.00521 * 15 14 12 30 30 H 1.09004 * 109.46876 * 210.00340 * 15 14 12 31 31 H 1.08998 * 109.47192 * 330.00289 * 15 14 12 32 32 H 1.09000 * 109.46608 * 299.99982 * 18 16 14 33 33 H 1.09000 * 109.46876 * 59.99488 * 18 16 14 34 34 H 1.08996 * 109.47479 * 180.02562 * 19 18 16 35 35 H 1.09001 * 109.46601 * 59.99997 * 19 18 16 36 36 H 1.09001 * 109.47039 * 299.99210 * 20 19 18 37 37 H 1.09001 * 109.46687 * 180.02562 * 20 19 18 38 38 H 1.09000 * 109.47770 * 179.97438 * 23 21 20 39 39 H 1.09004 * 109.46868 * 299.99848 * 23 21 20 40 40 H 1.09001 * 109.47336 * 59.99385 * 23 21 20 41 41 H 1.08995 * 109.47150 * 300.00017 * 24 16 14 42 42 H 1.08996 * 109.46886 * 60.00043 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6991 -0.2393 -2.4827 7 7 0.9433 0.8302 -2.6034 8 14 2.3212 -1.1203 -4.0080 9 1 1.3426 -2.1616 -4.4119 10 1 2.4864 -0.1413 -5.1123 11 1 3.6292 -1.7582 -3.7122 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4546 15 6 0.8648 0.9414 2.5890 16 6 2.1956 -0.9404 3.6507 17 1 2.8011 -1.7967 3.3540 18 6 3.0454 0.0217 4.4833 19 6 3.5554 -0.6990 5.7328 20 6 2.3654 -1.1799 6.5656 21 6 1.5156 -2.1419 5.7331 22 1 2.1214 -2.9983 5.4367 23 6 0.3253 -2.6222 6.5657 24 6 1.0058 -1.4216 4.4838 25 1 -0.3635 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5137 0.8900 28 1 0.7092 1.1618 -3.4843 29 1 -0.1833 0.6437 2.6222 30 1 1.1227 1.4666 3.5087 31 1 1.0286 1.6001 1.7362 32 1 3.8928 0.3646 3.8898 33 1 2.4395 0.8779 4.7800 34 1 4.1604 -0.0135 6.3262 35 1 4.1611 -1.5554 5.4364 36 1 1.7596 -0.3235 6.8621 37 1 2.7288 -1.6930 7.4560 38 1 -0.2804 -3.3073 5.9725 39 1 0.6884 -3.1357 7.4561 40 1 -0.2803 -1.7657 6.8618 41 1 0.4000 -0.5654 4.7804 42 1 0.4005 -2.1069 3.8906 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596760693.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:58:21 Heat of formation + Delta-G solvation = -79.425388 kcal Electronic energy + Delta-G solvation = -19832.307002 eV Core-core repulsion = 17003.529892 eV Total energy + Delta-G solvation = -2828.777109 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.22949 -39.27541 -36.23099 -35.76869 -33.33943 -32.54604 -30.46708 -27.87477 -27.27136 -27.08411 -24.78654 -23.09387 -22.05974 -20.54197 -19.99688 -18.41522 -17.49443 -17.22293 -16.43376 -16.22117 -15.71620 -15.40206 -15.02788 -14.88840 -14.59279 -14.20223 -14.00516 -13.65304 -13.44752 -13.24188 -12.95932 -12.92456 -12.75854 -12.70325 -12.47904 -12.24124 -12.19410 -12.05952 -11.97223 -11.79770 -11.42119 -11.26902 -11.09142 -10.99193 -10.58843 -10.20077 -9.46340 -8.15913 -6.26290 1.38845 1.39177 1.51448 1.90478 2.20462 2.45794 3.13005 3.67337 3.82292 3.96086 4.04980 4.22197 4.25500 4.32220 4.48951 4.53522 4.55627 4.65387 4.70479 4.72591 4.78247 4.86102 4.92023 4.98920 4.99415 5.04014 5.08006 5.15983 5.19722 5.28094 5.34305 5.42165 5.43434 5.48678 5.59336 5.71948 5.79811 5.97027 6.20933 6.60534 6.82079 7.39119 7.50969 8.89809 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.037611 B = 0.004983 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.288844 B = 5618.305824 C = 5704.415064 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.029 3.971 3 H 0.040 0.960 4 C -0.531 4.531 5 H 0.044 0.956 6 C 0.021 3.979 7 N -0.909 5.909 8 Si 0.955 3.045 9 H -0.274 1.274 10 H -0.272 1.272 11 H -0.280 1.280 12 C 0.516 3.484 13 O -0.594 6.594 14 N -0.616 5.616 15 C 0.076 3.924 16 C 0.133 3.867 17 H 0.058 0.942 18 C -0.120 4.120 19 C -0.114 4.114 20 C -0.107 4.107 21 C -0.090 4.090 22 H 0.055 0.945 23 C -0.141 4.141 24 C -0.111 4.111 25 H 0.070 0.930 26 H 0.014 0.986 27 H 0.066 0.934 28 H 0.265 0.735 29 H 0.067 0.933 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.045 0.955 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.050 0.950 36 H 0.076 0.924 37 H 0.077 0.923 38 H 0.046 0.954 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.082 0.918 42 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.896 1.006 19.726 19.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.008 3.992 3 H 0.057 0.943 4 C -0.570 4.570 5 H 0.062 0.938 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.780 3.220 9 H -0.199 1.199 10 H -0.197 1.197 11 H -0.206 1.206 12 C 0.307 3.693 13 O -0.475 6.475 14 N -0.348 5.348 15 C -0.065 4.065 16 C 0.030 3.970 17 H 0.076 0.924 18 C -0.159 4.159 19 C -0.152 4.152 20 C -0.144 4.144 21 C -0.109 4.109 22 H 0.074 0.926 23 C -0.198 4.198 24 C -0.149 4.149 25 H 0.088 0.912 26 H 0.034 0.966 27 H 0.084 0.916 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.114 0.886 31 H 0.086 0.914 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.101 0.899 35 H 0.069 0.931 36 H 0.095 0.905 37 H 0.096 0.904 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.083 0.917 41 H 0.101 0.899 42 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.625 0.627 19.529 19.607 hybrid contribution 0.428 -0.588 -1.444 1.617 sum -1.198 0.039 18.085 18.124 Atomic orbital electron populations 1.21789 0.95049 0.99202 1.02483 1.18737 0.95413 0.95607 0.89408 0.94258 1.21293 1.31621 1.12691 0.91355 0.93794 1.25581 0.95182 0.95758 1.01318 1.69943 1.37171 1.23451 1.24302 0.85608 0.78573 0.78610 0.79165 1.19947 1.19667 1.20563 1.21716 0.78128 0.83656 0.85821 1.90474 1.40589 1.29149 1.87242 1.48086 1.51899 1.29972 1.04890 1.22051 0.94421 0.86461 1.03614 1.21129 0.96036 0.95443 0.84373 0.92370 1.21839 0.98868 0.98659 0.96487 1.21495 0.98238 1.00058 0.95367 1.21581 0.95958 0.99156 0.97699 1.21099 0.97440 0.97913 0.94457 0.92617 1.21774 0.97136 1.01356 0.99571 1.21849 0.96572 1.00578 0.95926 0.91160 0.96646 0.91558 0.92555 0.91465 0.88615 0.91425 0.93652 0.89708 0.89893 0.93068 0.90550 0.90441 0.93490 0.91464 0.91684 0.89931 0.93942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.00 8.60 71.98 0.62 -5.38 16 2 C 0.03 1.54 1.83 -12.29 -0.02 1.52 16 3 H 0.04 2.13 7.40 -2.39 -0.02 2.11 16 4 C -0.53 -31.97 8.37 25.60 0.21 -31.75 16 5 H 0.04 2.85 6.75 -2.91 -0.02 2.83 16 6 C 0.02 1.19 5.30 84.65 0.45 1.64 16 7 N -0.91 -51.85 11.32 21.45 0.24 -51.61 16 8 Si 0.95 46.00 29.54 68.60 2.03 48.03 16 9 H -0.27 -12.83 7.11 99.48 0.71 -12.12 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 11 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 12 C 0.52 25.28 7.07 87.66 0.62 25.90 16 13 O -0.59 -33.86 14.79 -3.03 -0.04 -33.91 16 14 N -0.62 -22.52 2.76 -822.56 -2.27 -24.79 16 15 C 0.08 2.13 7.86 127.77 1.00 3.14 16 16 C 0.13 4.14 2.52 44.99 0.11 4.25 16 17 H 0.06 2.25 6.90 -2.39 -0.02 2.24 16 18 C -0.12 -2.90 5.18 30.60 0.16 -2.74 16 19 C -0.11 -2.15 5.92 30.59 0.18 -1.97 16 20 C -0.11 -1.68 5.20 30.59 0.16 -1.52 16 21 C -0.09 -1.77 2.72 -10.81 -0.03 -1.80 16 22 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 23 C -0.14 -2.24 9.19 71.98 0.66 -1.57 16 24 C -0.11 -2.74 4.48 30.58 0.14 -2.60 16 25 H 0.07 3.62 6.07 -2.39 -0.01 3.60 16 26 H 0.01 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.07 2.50 4.53 -2.39 -0.01 2.49 16 28 H 0.27 14.26 8.31 -92.71 -0.77 13.49 16 29 H 0.07 1.71 6.95 -2.39 -0.02 1.69 16 30 H 0.10 1.96 6.42 -2.38 -0.02 1.95 16 31 H 0.07 2.10 6.01 -2.39 -0.01 2.08 16 32 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.08 1.68 6.66 -2.39 -0.02 1.67 16 34 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 35 H 0.05 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 38 H 0.05 0.81 8.14 -2.39 -0.02 0.80 16 39 H 0.07 0.89 8.14 -2.38 -0.02 0.87 16 40 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.08 1.72 7.67 -2.39 -0.02 1.70 16 42 H 0.04 1.23 8.14 -2.39 -0.02 1.21 16 Total: -1.00 -70.07 317.24 5.20 -64.88 By element: Atomic # 1 Polarization: 9.31 SS G_CDS: 0.98 Total: 10.28 kcal Atomic # 6 Polarization: -17.15 SS G_CDS: 4.27 Total: -12.89 kcal Atomic # 7 Polarization: -74.37 SS G_CDS: -2.03 Total: -76.40 kcal Atomic # 8 Polarization: -33.86 SS G_CDS: -0.04 Total: -33.91 kcal Atomic # 14 Polarization: 46.00 SS G_CDS: 2.03 Total: 48.03 kcal Total: -70.07 5.20 -64.88 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596760693.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.548 kcal (2) G-P(sol) polarization free energy of solvation -70.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.877 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds