Wall clock time and date at job start Mon Mar 30 2020 06:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.50697 * 109.47294 * 240.00173 * 2 1 3 5 5 H 1.08006 * 119.99590 * 240.00225 * 4 2 1 6 6 C 1.37875 * 120.00173 * 59.99740 * 4 2 1 7 7 N 1.31509 * 120.00017 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99987 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47232 * 89.99675 * 8 6 4 10 10 H 1.48493 * 109.47030 * 209.99809 * 8 6 4 11 11 H 1.48499 * 109.46745 * 330.00032 * 8 6 4 12 12 C 1.50699 * 109.47216 * 119.99590 * 2 1 3 13 13 O 1.21280 * 120.00011 * 120.00411 * 12 2 1 14 14 N 1.34776 * 120.00066 * 300.00309 * 12 2 1 15 15 C 1.46497 * 119.99872 * 179.97438 * 14 12 2 16 16 C 1.53005 * 109.47276 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.46935 * 55.00250 * 16 15 14 18 18 C 1.53002 * 109.46982 * 295.00517 * 16 15 14 19 19 C 1.52997 * 109.47092 * 179.97438 * 18 16 15 20 20 C 1.53002 * 109.46978 * 59.99700 * 19 18 16 21 21 C 1.52993 * 109.47392 * 299.99957 * 20 19 18 22 22 C 1.52997 * 109.47024 * 60.00071 * 21 20 19 23 23 H 1.09001 * 109.47375 * 180.02562 * 22 21 20 24 24 C 1.53006 * 109.47164 * 60.00057 * 22 21 20 25 25 H 1.08994 * 109.47001 * 60.00515 * 1 2 3 26 26 H 1.09000 * 109.46593 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47334 * 300.00047 * 1 2 3 28 28 H 0.96998 * 120.00090 * 180.02562 * 7 6 4 29 29 H 0.96998 * 120.00301 * 359.97438 * 14 12 2 30 30 H 1.09001 * 109.47003 * 60.00838 * 15 14 12 31 31 H 1.09000 * 109.47987 * 300.00360 * 15 14 12 32 32 H 1.09002 * 109.47067 * 299.99652 * 18 16 15 33 33 H 1.09000 * 109.47312 * 59.99678 * 18 16 15 34 34 H 1.08998 * 109.47624 * 180.02562 * 19 18 16 35 35 H 1.09002 * 109.47045 * 299.99867 * 19 18 16 36 36 H 1.09002 * 109.46838 * 60.00684 * 20 19 18 37 37 H 1.09004 * 109.47006 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47722 * 300.00185 * 21 20 19 39 39 H 1.09000 * 109.47250 * 180.02562 * 21 20 19 40 40 H 1.09001 * 109.46998 * 299.99705 * 24 22 21 41 41 H 1.09000 * 109.47050 * 59.99996 * 24 22 21 42 42 H 1.09001 * 109.46801 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3430 -2.1618 -4.4118 10 1 2.4866 -0.1414 -5.1122 11 1 3.6294 -1.7582 -3.7121 12 6 2.0324 -0.7103 1.2305 13 8 2.7297 -1.6963 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1947 -0.9407 3.6507 16 6 1.6842 -0.2197 4.9000 17 1 0.5979 -0.1416 4.8560 18 6 2.2942 1.1820 4.9649 19 6 1.7833 1.9031 6.2138 20 6 2.1871 1.1129 7.4601 21 6 1.5772 -0.2887 7.3952 22 6 2.0881 -1.0099 6.1464 23 1 1.6532 -2.0083 6.0998 24 6 3.6130 -1.1197 6.2087 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.7090 1.1613 -3.4844 29 1 1.1494 0.5390 2.5436 30 1 3.2847 -0.9409 3.6510 31 1 1.8311 -1.9683 3.6507 32 1 3.3805 1.1038 5.0090 33 1 2.0061 1.7451 4.0772 34 1 2.2174 2.9019 6.2599 35 1 0.6970 1.9813 6.1694 36 1 3.2735 1.0348 7.5046 37 1 1.8228 1.6264 8.3499 38 1 0.4909 -0.2107 7.3508 39 1 1.8646 -0.8515 8.2834 40 1 4.0475 -0.1211 6.2549 41 1 3.9007 -1.6826 7.0966 42 1 3.9769 -1.6330 5.3187 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596924806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:08 Heat of formation + Delta-G solvation = -78.373709 kcal Electronic energy + Delta-G solvation = -19356.184721 eV Core-core repulsion = 16527.453215 eV Total energy + Delta-G solvation = -2828.731505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.78545 -38.36222 -34.31297 -33.66528 -32.18748 -31.11503 -30.03612 -27.17631 -25.35043 -25.06658 -22.64208 -22.15230 -21.08873 -19.39499 -18.38980 -16.39059 -16.13383 -15.53406 -15.36282 -14.84483 -14.41990 -14.29905 -14.04028 -13.59944 -13.14804 -12.83811 -12.72826 -12.58907 -12.23653 -11.95609 -11.63410 -11.54838 -11.36889 -11.15974 -10.98375 -10.89150 -10.65921 -10.63243 -10.28965 -10.21440 -10.13783 -10.02133 -9.90009 -8.92596 -8.54640 -8.31854 -8.26660 -5.99128 -4.01843 3.36458 3.41898 3.49192 3.82787 4.00704 4.50874 4.53003 4.57793 4.65704 5.05062 5.09327 5.22962 5.25270 5.25911 5.34149 5.38354 5.52171 5.57492 5.70463 5.76549 5.85121 5.88815 5.93790 5.99992 6.04448 6.15391 6.17863 6.23616 6.26711 6.42652 6.49830 6.66476 6.87751 6.98127 7.20017 7.52914 7.80287 8.04294 8.21420 8.53166 9.07429 9.33521 9.63703 11.08571 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.043916 B = 0.004263 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.427677 B = 6567.001102 C = 6888.094621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.051 0.949 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.518 3.482 13 O -0.549 6.549 14 N -0.746 5.746 15 C 0.124 3.876 16 C -0.092 4.092 17 H 0.074 0.926 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.121 4.121 21 C -0.113 4.113 22 C -0.083 4.083 23 H 0.070 0.930 24 C -0.155 4.155 25 H 0.092 0.908 26 H 0.030 0.970 27 H 0.011 0.989 28 H 0.260 0.740 29 H 0.394 0.606 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.067 0.933 33 H 0.065 0.935 34 H 0.060 0.940 35 H 0.060 0.940 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.060 0.940 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.051 0.949 42 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.130 2.101 19.501 19.614 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.307 3.693 13 O -0.425 6.425 14 N -0.400 5.400 15 C 0.000 4.000 16 C -0.111 4.111 17 H 0.093 0.907 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.159 4.159 21 C -0.150 4.150 22 C -0.102 4.102 23 H 0.089 0.911 24 C -0.212 4.212 25 H 0.111 0.889 26 H 0.049 0.951 27 H 0.030 0.970 28 H 0.070 0.930 29 H 0.228 0.772 30 H 0.080 0.920 31 H 0.075 0.925 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.070 0.930 42 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 0.321 1.478 19.263 19.323 hybrid contribution -0.051 -0.033 -0.752 0.754 sum 0.270 1.446 18.512 18.570 Atomic orbital electron populations 1.21733 0.96630 0.99738 1.00835 1.18867 0.94088 0.96811 0.89531 0.93105 1.21160 1.30810 1.12720 0.89052 0.90829 1.24949 0.95186 0.95070 0.99087 1.69871 1.37291 1.23127 1.23445 0.86461 0.79461 0.79242 0.82107 1.20705 1.21323 1.19757 1.21937 0.78484 0.84273 0.84571 1.90521 1.38106 1.27004 1.86874 1.46306 1.55449 1.32592 1.05703 1.21282 0.99039 0.95860 0.83863 1.21391 1.00540 0.95267 0.93924 0.90746 1.21639 1.00915 0.95166 0.97780 1.21528 1.00954 0.98479 0.94656 1.21576 1.00985 0.95675 0.97638 1.21547 1.00212 0.95907 0.97357 1.21039 0.96421 0.98767 0.93976 0.91122 1.22015 0.95375 1.02074 1.01739 0.88911 0.95074 0.96983 0.93031 0.77195 0.92043 0.92485 0.91478 0.91639 0.92173 0.92092 0.91727 0.92474 0.92080 0.92165 0.92012 0.93038 0.92132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 2 C 0.03 0.71 2.64 -92.92 -0.25 0.47 16 3 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.50 -14.44 8.37 -34.44 -0.29 -14.73 16 5 H 0.07 2.25 6.75 -52.48 -0.35 1.90 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.51 11.32 55.43 0.63 -24.89 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.52 12.10 7.15 -10.99 -0.08 12.03 16 13 O -0.55 -14.75 15.46 5.56 0.09 -14.66 16 14 N -0.75 -13.22 5.18 -60.29 -0.31 -13.53 16 15 C 0.12 1.86 4.56 -4.04 -0.02 1.84 16 16 C -0.09 -1.03 2.00 -90.62 -0.18 -1.21 16 17 H 0.07 0.83 8.14 -51.93 -0.42 0.40 16 18 C -0.12 -1.24 4.80 -26.73 -0.13 -1.37 16 19 C -0.12 -1.06 5.92 -26.73 -0.16 -1.21 16 20 C -0.12 -0.99 5.65 -26.73 -0.15 -1.14 16 21 C -0.11 -0.94 5.45 -26.74 -0.15 -1.09 16 22 C -0.08 -0.81 2.72 -90.62 -0.25 -1.06 16 23 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 24 C -0.16 -1.50 8.15 37.16 0.30 -1.20 16 25 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 26 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 27 H 0.01 0.22 7.57 -51.93 -0.39 -0.17 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.39 6.10 7.07 -40.82 -0.29 5.81 16 30 H 0.06 0.98 6.71 -51.93 -0.35 0.63 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 32 H 0.07 0.73 6.43 -51.93 -0.33 0.40 16 33 H 0.06 0.74 7.18 -51.93 -0.37 0.37 16 34 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 36 H 0.06 0.53 6.43 -51.93 -0.33 0.20 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.58 4.81 -51.93 -0.25 0.33 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.06 0.66 6.55 -51.93 -0.34 0.32 16 LS Contribution 317.84 15.07 4.79 4.79 Total: -1.00 -31.03 317.84 -8.05 -39.08 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: -7.12 Total: 2.00 kcal Atomic # 6 Polarization: -8.78 SS G_CDS: -1.10 Total: -9.89 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.32 Total: -38.42 kcal Atomic # 8 Polarization: -14.75 SS G_CDS: 0.09 Total: -14.66 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -31.03 -8.05 -39.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596924806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.293 kcal (2) G-P(sol) polarization free energy of solvation -31.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.325 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds