Wall clock time and date at job start Mon Mar 30 2020 06:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47097 * 2 1 4 4 C 1.50697 * 109.47294 * 240.00173 * 2 1 3 5 5 H 1.08006 * 119.99590 * 240.00225 * 4 2 1 6 6 C 1.37875 * 120.00173 * 59.99740 * 4 2 1 7 7 N 1.31509 * 120.00017 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 119.99987 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47232 * 89.99675 * 8 6 4 10 10 H 1.48493 * 109.47030 * 209.99809 * 8 6 4 11 11 H 1.48499 * 109.46745 * 330.00032 * 8 6 4 12 12 C 1.50699 * 109.47216 * 119.99590 * 2 1 3 13 13 O 1.21280 * 120.00011 * 120.00411 * 12 2 1 14 14 N 1.34776 * 120.00066 * 300.00309 * 12 2 1 15 15 C 1.46497 * 119.99872 * 179.97438 * 14 12 2 16 16 C 1.53005 * 109.47276 * 180.02562 * 15 14 12 17 17 H 1.09002 * 109.46935 * 55.00250 * 16 15 14 18 18 C 1.53002 * 109.46982 * 295.00517 * 16 15 14 19 19 C 1.52997 * 109.47092 * 179.97438 * 18 16 15 20 20 C 1.53002 * 109.46978 * 59.99700 * 19 18 16 21 21 C 1.52993 * 109.47392 * 299.99957 * 20 19 18 22 22 C 1.52997 * 109.47024 * 60.00071 * 21 20 19 23 23 H 1.09001 * 109.47375 * 180.02562 * 22 21 20 24 24 C 1.53006 * 109.47164 * 60.00057 * 22 21 20 25 25 H 1.08994 * 109.47001 * 60.00515 * 1 2 3 26 26 H 1.09000 * 109.46593 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47334 * 300.00047 * 1 2 3 28 28 H 0.96998 * 120.00090 * 180.02562 * 7 6 4 29 29 H 0.96998 * 120.00301 * 359.97438 * 14 12 2 30 30 H 1.09001 * 109.47003 * 60.00838 * 15 14 12 31 31 H 1.09000 * 109.47987 * 300.00360 * 15 14 12 32 32 H 1.09002 * 109.47067 * 299.99652 * 18 16 15 33 33 H 1.09000 * 109.47312 * 59.99678 * 18 16 15 34 34 H 1.08998 * 109.47624 * 180.02562 * 19 18 16 35 35 H 1.09002 * 109.47045 * 299.99867 * 19 18 16 36 36 H 1.09002 * 109.46838 * 60.00684 * 20 19 18 37 37 H 1.09004 * 109.47006 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.47722 * 300.00185 * 21 20 19 39 39 H 1.09000 * 109.47250 * 180.02562 * 21 20 19 40 40 H 1.09001 * 109.46998 * 299.99705 * 24 22 21 41 41 H 1.09000 * 109.47050 * 59.99996 * 24 22 21 42 42 H 1.09001 * 109.46801 * 180.02562 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1203 -4.0079 9 1 1.3430 -2.1618 -4.4118 10 1 2.4866 -0.1414 -5.1122 11 1 3.6294 -1.7582 -3.7121 12 6 2.0324 -0.7103 1.2305 13 8 2.7297 -1.6963 1.1193 14 7 1.7067 -0.2498 2.4546 15 6 2.1947 -0.9407 3.6507 16 6 1.6842 -0.2197 4.9000 17 1 0.5979 -0.1416 4.8560 18 6 2.2942 1.1820 4.9649 19 6 1.7833 1.9031 6.2138 20 6 2.1871 1.1129 7.4601 21 6 1.5772 -0.2887 7.3952 22 6 2.0881 -1.0099 6.1464 23 1 1.6532 -2.0083 6.0998 24 6 3.6130 -1.1197 6.2087 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3632 -1.0277 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 0.7090 1.1613 -3.4844 29 1 1.1494 0.5390 2.5436 30 1 3.2847 -0.9409 3.6510 31 1 1.8311 -1.9683 3.6507 32 1 3.3805 1.1038 5.0090 33 1 2.0061 1.7451 4.0772 34 1 2.2174 2.9019 6.2599 35 1 0.6970 1.9813 6.1694 36 1 3.2735 1.0348 7.5046 37 1 1.8228 1.6264 8.3499 38 1 0.4909 -0.2107 7.3508 39 1 1.8646 -0.8515 8.2834 40 1 4.0475 -0.1211 6.2549 41 1 3.9007 -1.6826 7.0966 42 1 3.9769 -1.6330 5.3187 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596924806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:08 Heat of formation + Delta-G solvation = -96.827260 kcal Electronic energy + Delta-G solvation = -19356.984927 eV Core-core repulsion = 16527.453215 eV Total energy + Delta-G solvation = -2829.531711 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.94880 -39.87644 -35.84225 -35.66272 -33.11087 -32.62856 -31.50123 -28.09638 -27.20472 -26.43325 -24.24523 -23.07853 -22.10205 -21.10588 -19.27934 -18.37012 -17.79507 -16.94085 -16.56342 -16.32274 -16.15936 -15.37551 -15.04521 -14.84285 -14.60683 -14.44156 -13.83516 -13.62559 -13.54427 -13.38542 -12.96854 -12.79671 -12.65755 -12.58733 -12.39553 -12.36180 -12.18795 -12.01661 -11.91621 -11.73766 -11.07117 -11.03884 -10.95090 -10.80214 -10.59142 -10.27888 -9.91053 -8.14990 -6.25375 1.40595 1.40971 1.53214 1.94993 2.37282 2.56932 3.14393 3.67285 3.77385 3.83544 4.22353 4.30879 4.33023 4.38197 4.49109 4.51795 4.57388 4.68938 4.74945 4.76625 4.84518 4.91250 4.95443 4.99544 5.02994 5.11200 5.14786 5.23483 5.30523 5.31998 5.40696 5.47797 5.49814 5.52733 5.65230 5.69928 5.75936 5.94729 6.22112 6.75491 6.87590 7.40364 7.56704 8.90881 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.043916 B = 0.004263 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 637.427677 B = 6567.001102 C = 6888.094621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.023 3.977 3 H 0.041 0.959 4 C -0.530 4.530 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.273 1.273 11 H -0.279 1.279 12 C 0.518 3.482 13 O -0.591 6.591 14 N -0.723 5.723 15 C 0.124 3.876 16 C -0.082 4.082 17 H 0.082 0.918 18 C -0.118 4.118 19 C -0.115 4.115 20 C -0.120 4.120 21 C -0.108 4.108 22 C -0.082 4.082 23 H 0.069 0.931 24 C -0.154 4.154 25 H 0.071 0.929 26 H 0.021 0.979 27 H 0.051 0.949 28 H 0.265 0.735 29 H 0.408 0.592 30 H 0.051 0.949 31 H 0.047 0.953 32 H 0.061 0.939 33 H 0.056 0.944 34 H 0.065 0.935 35 H 0.065 0.935 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.071 0.929 40 H 0.064 0.936 41 H 0.064 0.936 42 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.814 2.758 20.980 21.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.002 3.998 3 H 0.059 0.941 4 C -0.568 4.568 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.199 1.199 10 H -0.198 1.198 11 H -0.204 1.204 12 C 0.307 3.693 13 O -0.471 6.471 14 N -0.376 5.376 15 C 0.001 3.999 16 C -0.100 4.100 17 H 0.100 0.900 18 C -0.155 4.155 19 C -0.153 4.153 20 C -0.158 4.158 21 C -0.146 4.146 22 C -0.101 4.101 23 H 0.088 0.912 24 C -0.211 4.211 25 H 0.089 0.911 26 H 0.040 0.960 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.244 0.756 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.079 0.921 33 H 0.075 0.925 34 H 0.084 0.916 35 H 0.084 0.916 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -0.394 2.176 20.782 20.899 hybrid contribution 0.172 -0.212 -1.171 1.203 sum -0.221 1.963 19.611 19.710 Atomic orbital electron populations 1.21547 0.95019 0.99351 1.01714 1.18814 0.95374 0.95904 0.89726 0.94137 1.21292 1.31610 1.12708 0.91226 0.93497 1.25595 0.95201 0.95742 1.01400 1.69944 1.37244 1.23524 1.24307 0.85595 0.78620 0.78561 0.79110 1.19943 1.19844 1.20445 1.21561 0.78244 0.83689 0.85770 1.90497 1.40151 1.28846 1.87646 1.46039 1.54227 1.32461 1.04921 1.21448 0.98544 0.95723 0.84226 1.21337 1.00799 0.95438 0.92468 0.89970 1.21635 1.00605 0.94708 0.98587 1.21505 1.01197 0.98630 0.93932 1.21580 1.00999 0.95475 0.97705 1.21524 1.00432 0.95937 0.96701 1.21045 0.96391 0.98712 0.93947 0.91241 1.22003 0.95437 1.02212 1.01455 0.91055 0.95951 0.92968 0.92581 0.75554 0.93019 0.93479 0.92058 0.92488 0.91580 0.91618 0.91796 0.91139 0.91622 0.91025 0.91735 0.91734 0.94001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.48 8.87 71.98 0.64 -4.84 16 2 C 0.02 1.18 2.64 -12.29 -0.03 1.15 16 3 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.53 -31.40 8.37 25.60 0.21 -31.19 16 5 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 6 C 0.02 1.12 5.30 84.66 0.45 1.57 16 7 N -0.91 -51.68 11.32 21.45 0.24 -51.44 16 8 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 9 H -0.27 -12.69 7.11 99.48 0.71 -11.99 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 11 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 12 C 0.52 24.57 7.15 87.66 0.63 25.20 16 13 O -0.59 -32.74 15.46 -3.03 -0.05 -32.79 16 14 N -0.72 -25.26 5.18 -463.06 -2.40 -27.66 16 15 C 0.12 3.69 4.56 86.38 0.39 4.08 16 16 C -0.08 -1.70 2.00 -10.79 -0.02 -1.72 16 17 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 18 C -0.12 -2.29 4.80 30.59 0.15 -2.15 16 19 C -0.12 -1.75 5.92 30.59 0.18 -1.57 16 20 C -0.12 -1.60 5.65 30.59 0.17 -1.43 16 21 C -0.11 -1.50 5.45 30.59 0.17 -1.33 16 22 C -0.08 -1.44 2.72 -10.79 -0.03 -1.47 16 23 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 24 C -0.15 -2.79 8.15 71.98 0.59 -2.21 16 25 H 0.07 3.64 6.07 -2.39 -0.01 3.62 16 26 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.05 1.93 7.57 -2.38 -0.02 1.92 16 28 H 0.26 14.20 8.31 -92.71 -0.77 13.43 16 29 H 0.41 12.01 7.07 -92.71 -0.66 11.36 16 30 H 0.05 1.67 6.71 -2.39 -0.02 1.65 16 31 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 32 H 0.06 1.27 6.43 -2.39 -0.02 1.25 16 33 H 0.06 1.20 7.18 -2.39 -0.02 1.18 16 34 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.06 0.88 6.43 -2.39 -0.02 0.86 16 37 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 38 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 39 H 0.07 0.86 8.14 -2.39 -0.02 0.85 16 40 H 0.06 1.13 4.81 -2.39 -0.01 1.12 16 41 H 0.06 0.99 8.14 -2.39 -0.02 0.98 16 42 H 0.04 0.91 6.55 -2.39 -0.02 0.89 16 Total: -1.00 -67.27 317.84 3.66 -63.61 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: 0.34 Total: 16.59 kcal Atomic # 6 Polarization: -19.39 SS G_CDS: 3.49 Total: -15.90 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -2.15 Total: -79.10 kcal Atomic # 8 Polarization: -32.74 SS G_CDS: -0.05 Total: -32.79 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -67.27 3.66 -63.61 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596924806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.217 kcal (2) G-P(sol) polarization free energy of solvation -67.266 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.610 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds