Wall clock time and date at job start Mon Mar 30 2020 06:46:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46909 * 90.00072 * 8 6 4 10 10 H 1.48503 * 109.46868 * 209.99959 * 8 6 4 11 11 H 1.48495 * 109.46964 * 330.00013 * 8 6 4 12 12 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 13 13 O 1.21281 * 119.99736 * 119.99813 * 12 2 1 14 14 N 1.34770 * 120.00019 * 300.00531 * 12 2 1 15 15 C 1.46512 * 119.99646 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.46797 * 180.02562 * 15 14 12 17 17 H 1.09001 * 109.47423 * 54.99541 * 16 15 14 18 18 C 1.53005 * 109.46867 * 294.99762 * 16 15 14 19 19 C 1.53000 * 109.46867 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.46776 * 60.00315 * 19 18 16 21 21 C 1.52991 * 109.47237 * 299.99687 * 20 19 18 22 22 C 1.52997 * 109.47188 * 60.00135 * 21 20 19 23 23 H 1.09000 * 109.46818 * 59.99981 * 22 21 20 24 24 C 1.53000 * 109.47260 * 179.97438 * 22 21 20 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 29 29 H 0.96992 * 120.00518 * 359.97438 * 14 12 2 30 30 H 1.09001 * 109.47027 * 299.99897 * 15 14 12 31 31 H 1.08992 * 109.46968 * 60.00347 * 15 14 12 32 32 H 1.09000 * 109.47443 * 300.00098 * 18 16 15 33 33 H 1.09001 * 109.47099 * 60.00379 * 18 16 15 34 34 H 1.09000 * 109.47630 * 300.00534 * 19 18 16 35 35 H 1.09004 * 109.47403 * 180.02562 * 19 18 16 36 36 H 1.09004 * 109.46964 * 179.97438 * 20 19 18 37 37 H 1.09000 * 109.47312 * 60.00037 * 20 19 18 38 38 H 1.09000 * 109.47245 * 299.99828 * 21 20 19 39 39 H 1.09001 * 109.47171 * 180.02562 * 21 20 19 40 40 H 1.09001 * 109.47384 * 179.97438 * 24 22 21 41 41 H 1.09001 * 109.47254 * 300.00134 * 24 22 21 42 42 H 1.09000 * 109.47102 * 60.00300 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1410 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.1947 -0.9411 3.6507 16 6 1.6842 -0.2202 4.9000 17 1 0.5979 -0.1419 4.8559 18 6 2.2943 1.1815 4.9650 19 6 1.7843 1.9021 6.2146 20 6 2.1891 1.1113 7.4603 21 6 1.5792 -0.2902 7.3952 22 6 2.0891 -1.0109 6.1456 23 1 3.1754 -1.0891 6.1892 24 6 1.4796 -2.4127 6.0809 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7095 1.1620 -3.4843 29 1 1.1494 0.5388 2.5436 30 1 1.8310 -1.9686 3.6505 31 1 3.2846 -0.9413 3.6509 32 1 3.3806 1.1033 5.0091 33 1 2.0062 1.7447 4.0774 34 1 0.6979 1.9803 6.1711 35 1 2.2185 2.9008 6.2608 36 1 1.8262 1.6249 8.3506 37 1 3.2755 1.0331 7.5039 38 1 0.4928 -0.2121 7.3517 39 1 1.8672 -0.8535 8.2829 40 1 1.8425 -2.9260 5.1904 41 1 1.7684 -2.9759 6.9683 42 1 0.3932 -2.3349 6.0375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596924807.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:11 Heat of formation + Delta-G solvation = -82.053121 kcal Electronic energy + Delta-G solvation = -19280.611648 eV Core-core repulsion = 16451.720591 eV Total energy + Delta-G solvation = -2828.891056 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.57895 -38.28157 -34.30014 -33.66432 -32.78583 -31.12671 -30.02579 -26.84893 -25.30726 -25.06650 -22.60207 -21.52871 -20.94460 -19.96115 -19.08667 -16.34167 -16.01770 -15.23569 -14.96538 -14.96243 -14.48393 -14.34050 -14.16312 -13.61491 -13.43027 -12.78014 -12.62028 -12.42533 -12.07139 -11.89678 -11.81949 -11.60506 -11.40005 -11.05447 -10.98386 -10.98140 -10.68053 -10.63345 -10.50847 -10.21729 -10.13342 -10.02205 -9.89540 -8.92571 -8.54629 -8.31323 -8.26605 -5.99125 -4.01827 3.36450 3.41875 3.49201 3.82830 4.00528 4.50348 4.52488 4.58098 4.65261 4.98377 5.03397 5.22123 5.29815 5.34111 5.36503 5.37633 5.46147 5.59194 5.68367 5.75060 5.86708 5.91108 5.93756 5.98249 6.04039 6.12439 6.14741 6.22986 6.29162 6.40950 6.47803 6.66601 6.87696 6.98134 7.19980 7.52910 7.80302 8.04318 8.21448 8.53201 9.07455 9.33564 9.63708 11.08561 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.040585 B = 0.004285 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.743870 B = 6533.327425 C = 6863.541212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.051 0.949 4 C -0.499 4.499 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.518 3.482 13 O -0.549 6.549 14 N -0.746 5.746 15 C 0.122 3.878 16 C -0.092 4.092 17 H 0.075 0.925 18 C -0.116 4.116 19 C -0.119 4.119 20 C -0.120 4.120 21 C -0.112 4.112 22 C -0.083 4.083 23 H 0.071 0.929 24 C -0.153 4.153 25 H 0.030 0.970 26 H 0.011 0.989 27 H 0.092 0.908 28 H 0.260 0.740 29 H 0.394 0.606 30 H 0.063 0.937 31 H 0.057 0.943 32 H 0.063 0.937 33 H 0.066 0.934 34 H 0.061 0.939 35 H 0.060 0.940 36 H 0.058 0.942 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.060 0.940 40 H 0.062 0.938 41 H 0.052 0.948 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.873 1.641 19.461 19.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.069 0.931 4 C -0.537 4.537 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.307 3.693 13 O -0.425 6.425 14 N -0.400 5.400 15 C -0.002 4.002 16 C -0.111 4.111 17 H 0.093 0.907 18 C -0.154 4.154 19 C -0.157 4.157 20 C -0.157 4.157 21 C -0.150 4.150 22 C -0.102 4.102 23 H 0.089 0.911 24 C -0.210 4.210 25 H 0.049 0.951 26 H 0.030 0.970 27 H 0.111 0.889 28 H 0.070 0.930 29 H 0.228 0.772 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.077 0.923 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.081 0.919 41 H 0.071 0.929 42 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.425 1.017 19.223 19.255 hybrid contribution -0.013 -0.007 -0.751 0.751 sum -0.439 1.010 18.472 18.505 Atomic orbital electron populations 1.21732 0.96627 0.99743 1.00833 1.18867 0.94089 0.96809 0.89534 0.93110 1.21160 1.30807 1.12723 0.89052 0.90829 1.24951 0.95182 0.95074 0.99088 1.69874 1.37298 1.23117 1.23446 0.86461 0.79460 0.79243 0.82107 1.20704 1.21323 1.19757 1.21934 0.78481 0.84280 0.84569 1.90521 1.38109 1.27007 1.86873 1.46302 1.55429 1.32599 1.05698 1.21319 0.98840 0.96192 0.83869 1.21418 1.00742 0.95008 0.93936 0.90677 1.21608 1.00655 0.95263 0.97835 1.21537 1.00983 0.98521 0.94627 1.21541 1.00709 0.95771 0.97720 1.21578 1.00476 0.95619 0.97318 1.21072 1.00525 0.94622 0.93972 0.91054 1.21934 1.00968 0.96200 1.01924 0.95068 0.96979 0.88919 0.93033 0.77202 0.91931 0.92450 0.91827 0.91520 0.92038 0.92133 0.92339 0.92098 0.92013 0.92158 0.91898 0.92879 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 2 C 0.03 0.71 2.64 -92.92 -0.25 0.47 16 3 H 0.05 1.33 8.14 -51.93 -0.42 0.91 16 4 C -0.50 -14.44 8.37 -34.44 -0.29 -14.73 16 5 H 0.07 2.25 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.51 11.32 55.43 0.63 -24.89 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 C 0.52 12.10 7.15 -10.99 -0.08 12.02 16 13 O -0.55 -14.74 15.46 5.56 0.09 -14.66 16 14 N -0.75 -13.22 5.18 -60.29 -0.31 -13.53 16 15 C 0.12 1.84 4.85 -4.04 -0.02 1.82 16 16 C -0.09 -1.03 1.76 -90.62 -0.16 -1.19 16 17 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 18 C -0.12 -1.23 5.08 -26.73 -0.14 -1.37 16 19 C -0.12 -1.06 5.92 -26.73 -0.16 -1.22 16 20 C -0.12 -0.98 5.92 -26.73 -0.16 -1.14 16 21 C -0.11 -0.94 5.20 -26.74 -0.14 -1.08 16 22 C -0.08 -0.81 2.25 -90.62 -0.20 -1.01 16 23 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 24 C -0.15 -1.49 8.85 37.16 0.33 -1.17 16 25 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 27 H 0.09 2.38 6.07 -51.93 -0.32 2.06 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.39 6.10 7.07 -40.82 -0.29 5.81 16 30 H 0.06 1.00 6.17 -51.93 -0.32 0.68 16 31 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.75 7.18 -51.93 -0.37 0.38 16 34 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.06 0.69 6.32 -51.93 -0.33 0.36 16 41 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 324.40 15.07 4.89 4.89 Total: -1.00 -31.01 324.40 -8.18 -39.19 By element: Atomic # 1 Polarization: 9.14 SS G_CDS: -7.43 Total: 1.71 kcal Atomic # 6 Polarization: -8.79 SS G_CDS: -1.02 Total: -9.82 kcal Atomic # 7 Polarization: -38.73 SS G_CDS: 0.32 Total: -38.41 kcal Atomic # 8 Polarization: -14.74 SS G_CDS: 0.09 Total: -14.66 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.89 Total: 4.89 kcal Total: -31.01 -8.18 -39.19 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596924807.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.865 kcal (2) G-P(sol) polarization free energy of solvation -31.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.874 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds