Wall clock time and date at job start Mon Mar 30 2020 06:46:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50697 * 109.47239 * 240.00627 * 2 1 3 5 5 H 1.08001 * 119.99890 * 240.00284 * 4 2 1 6 6 C 1.37876 * 120.00428 * 59.99630 * 4 2 1 7 7 N 1.31510 * 119.99600 * 0.02562 * 6 4 2 8 8 Si 1.86805 * 120.00227 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46909 * 90.00072 * 8 6 4 10 10 H 1.48503 * 109.46868 * 209.99959 * 8 6 4 11 11 H 1.48495 * 109.46964 * 330.00013 * 8 6 4 12 12 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 13 13 O 1.21281 * 119.99736 * 119.99813 * 12 2 1 14 14 N 1.34770 * 120.00019 * 300.00531 * 12 2 1 15 15 C 1.46512 * 119.99646 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.46797 * 180.02562 * 15 14 12 17 17 H 1.09001 * 109.47423 * 54.99541 * 16 15 14 18 18 C 1.53005 * 109.46867 * 294.99762 * 16 15 14 19 19 C 1.53000 * 109.46867 * 180.02562 * 18 16 15 20 20 C 1.53002 * 109.46776 * 60.00315 * 19 18 16 21 21 C 1.52991 * 109.47237 * 299.99687 * 20 19 18 22 22 C 1.52997 * 109.47188 * 60.00135 * 21 20 19 23 23 H 1.09000 * 109.46818 * 59.99981 * 22 21 20 24 24 C 1.53000 * 109.47260 * 179.97438 * 22 21 20 25 25 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 26 26 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 27 27 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 28 28 H 0.97006 * 120.00212 * 179.97438 * 7 6 4 29 29 H 0.96992 * 120.00518 * 359.97438 * 14 12 2 30 30 H 1.09001 * 109.47027 * 299.99897 * 15 14 12 31 31 H 1.08992 * 109.46968 * 60.00347 * 15 14 12 32 32 H 1.09000 * 109.47443 * 300.00098 * 18 16 15 33 33 H 1.09001 * 109.47099 * 60.00379 * 18 16 15 34 34 H 1.09000 * 109.47630 * 300.00534 * 19 18 16 35 35 H 1.09004 * 109.47403 * 180.02562 * 19 18 16 36 36 H 1.09004 * 109.46964 * 179.97438 * 20 19 18 37 37 H 1.09000 * 109.47312 * 60.00037 * 20 19 18 38 38 H 1.09000 * 109.47245 * 299.99828 * 21 20 19 39 39 H 1.09001 * 109.47171 * 180.02562 * 21 20 19 40 40 H 1.09001 * 109.47384 * 179.97438 * 24 22 21 41 41 H 1.09001 * 109.47254 * 300.00134 * 24 22 21 42 42 H 1.09000 * 109.47102 * 60.00300 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9436 0.8303 -2.6033 8 14 2.3215 -1.1201 -4.0081 9 1 1.3429 -2.1614 -4.4120 10 1 2.4866 -0.1410 -5.1123 11 1 3.6294 -1.7580 -3.7123 12 6 2.0324 -0.7104 1.2304 13 8 2.7296 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.1947 -0.9411 3.6507 16 6 1.6842 -0.2202 4.9000 17 1 0.5979 -0.1419 4.8559 18 6 2.2943 1.1815 4.9650 19 6 1.7843 1.9021 6.2146 20 6 2.1891 1.1113 7.4603 21 6 1.5792 -0.2902 7.3952 22 6 2.0891 -1.0109 6.1456 23 1 3.1754 -1.0891 6.1892 24 6 1.4796 -2.4127 6.0809 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 0.7095 1.1620 -3.4843 29 1 1.1494 0.5388 2.5436 30 1 1.8310 -1.9686 3.6505 31 1 3.2846 -0.9413 3.6509 32 1 3.3806 1.1033 5.0091 33 1 2.0062 1.7447 4.0774 34 1 0.6979 1.9803 6.1711 35 1 2.2185 2.9008 6.2608 36 1 1.8262 1.6249 8.3506 37 1 3.2755 1.0331 7.5039 38 1 0.4928 -0.2121 7.3517 39 1 1.8672 -0.8535 8.2829 40 1 1.8425 -2.9260 5.1904 41 1 1.7684 -2.9759 6.9683 42 1 0.3932 -2.3349 6.0375 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596924807.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:10 Heat of formation + Delta-G solvation = -100.279236 kcal Electronic energy + Delta-G solvation = -19281.401992 eV Core-core repulsion = 16451.720591 eV Total energy + Delta-G solvation = -2829.681400 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.85688 -39.69726 -35.82738 -35.64186 -33.62985 -32.73989 -31.49786 -27.80941 -27.19055 -26.34652 -24.26143 -22.55510 -21.86038 -21.15385 -20.45179 -18.36897 -17.79299 -16.87462 -16.33870 -16.26597 -15.78031 -15.41595 -15.04811 -14.97280 -14.75842 -14.43641 -14.05287 -13.64176 -13.38147 -12.99555 -12.96919 -12.81945 -12.68668 -12.62596 -12.57203 -12.37185 -12.20015 -12.01491 -11.89363 -11.72533 -11.29888 -11.04654 -10.93352 -10.85504 -10.58948 -10.27798 -9.90205 -8.14973 -6.25346 1.40602 1.40962 1.53222 1.95048 2.37244 2.56837 3.14413 3.66858 3.75601 3.82716 4.14539 4.27631 4.32852 4.40912 4.49784 4.56613 4.60655 4.64496 4.72445 4.75033 4.88158 4.89011 4.95509 4.97193 5.02613 5.09461 5.15516 5.23227 5.29708 5.35330 5.39444 5.45206 5.48945 5.50556 5.62367 5.67606 5.75981 5.94810 6.22166 6.75500 6.87603 7.40383 7.56716 8.90884 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.040585 B = 0.004285 C = 0.004079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 689.743870 B = 6533.327425 C = 6863.541212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.023 3.977 3 H 0.041 0.959 4 C -0.530 4.530 5 H 0.047 0.953 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.956 3.044 9 H -0.274 1.274 10 H -0.274 1.274 11 H -0.279 1.279 12 C 0.518 3.482 13 O -0.591 6.591 14 N -0.723 5.723 15 C 0.122 3.878 16 C -0.081 4.081 17 H 0.082 0.918 18 C -0.117 4.117 19 C -0.116 4.116 20 C -0.119 4.119 21 C -0.108 4.108 22 C -0.081 4.081 23 H 0.067 0.933 24 C -0.152 4.152 25 H 0.021 0.979 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.265 0.735 29 H 0.408 0.592 30 H 0.055 0.945 31 H 0.045 0.955 32 H 0.056 0.944 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.058 0.942 38 H 0.066 0.934 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.066 0.934 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.626 2.265 20.940 21.124 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.002 3.998 3 H 0.058 0.942 4 C -0.568 4.568 5 H 0.065 0.935 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.199 1.199 10 H -0.198 1.198 11 H -0.204 1.204 12 C 0.307 3.693 13 O -0.471 6.471 14 N -0.376 5.376 15 C -0.002 4.002 16 C -0.100 4.100 17 H 0.101 0.899 18 C -0.154 4.154 19 C -0.153 4.153 20 C -0.156 4.156 21 C -0.145 4.145 22 C -0.100 4.100 23 H 0.085 0.915 24 C -0.210 4.210 25 H 0.041 0.959 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.244 0.756 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.077 0.923 38 H 0.084 0.916 39 H 0.090 0.910 40 H 0.063 0.937 41 H 0.085 0.915 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.208 1.681 20.742 20.845 hybrid contribution 0.230 -0.178 -1.171 1.206 sum -0.978 1.503 19.571 19.653 Atomic orbital electron populations 1.21546 0.95005 0.99363 1.01711 1.18814 0.95385 0.95895 0.89724 0.94153 1.21292 1.31605 1.12712 0.91225 0.93495 1.25596 0.95197 0.95745 1.01400 1.69947 1.37252 1.23515 1.24306 0.85595 0.78619 0.78563 0.79109 1.19934 1.19848 1.20450 1.21558 0.78241 0.83698 0.85762 1.90498 1.40153 1.28846 1.87642 1.46034 1.54207 1.32469 1.04914 1.21489 0.98202 0.96237 0.84227 1.21360 1.00964 0.95159 0.92494 0.89927 1.21610 1.00277 0.94857 0.98692 1.21516 1.01261 0.98667 0.93876 1.21546 1.00671 0.95594 0.97832 1.21550 1.00671 0.95648 0.96662 1.21064 1.00377 0.94587 0.93948 0.91472 1.21923 1.01128 0.96192 1.01713 0.95933 0.92963 0.91065 0.92584 0.75564 0.92664 0.93639 0.92515 0.92313 0.91502 0.91537 0.90930 0.92272 0.91567 0.90992 0.93736 0.91501 0.92307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.47 8.87 71.98 0.64 -4.83 16 2 C 0.02 1.18 2.64 -12.29 -0.03 1.15 16 3 H 0.04 2.15 8.14 -2.39 -0.02 2.13 16 4 C -0.53 -31.40 8.37 25.60 0.21 -31.18 16 5 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 6 C 0.02 1.12 5.30 84.66 0.45 1.57 16 7 N -0.91 -51.68 11.32 21.45 0.24 -51.44 16 8 Si 0.96 45.56 29.54 68.60 2.03 47.59 16 9 H -0.27 -12.68 7.11 99.48 0.71 -11.98 16 10 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 11 H -0.28 -13.52 7.11 99.48 0.71 -12.81 16 12 C 0.52 24.57 7.15 87.66 0.63 25.20 16 13 O -0.59 -32.73 15.46 -3.03 -0.05 -32.78 16 14 N -0.72 -25.27 5.18 -463.05 -2.40 -27.66 16 15 C 0.12 3.63 4.85 86.38 0.42 4.05 16 16 C -0.08 -1.69 1.76 -10.79 -0.02 -1.71 16 17 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 18 C -0.12 -2.29 5.08 30.60 0.16 -2.14 16 19 C -0.12 -1.77 5.92 30.60 0.18 -1.59 16 20 C -0.12 -1.61 5.92 30.59 0.18 -1.43 16 21 C -0.11 -1.50 5.20 30.59 0.16 -1.34 16 22 C -0.08 -1.43 2.25 -10.80 -0.02 -1.46 16 23 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 24 C -0.15 -2.75 8.85 71.98 0.64 -2.11 16 25 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 26 H 0.05 1.93 7.56 -2.39 -0.02 1.92 16 27 H 0.07 3.63 6.07 -2.39 -0.01 3.61 16 28 H 0.26 14.19 8.31 -92.70 -0.77 13.42 16 29 H 0.41 12.02 7.07 -92.71 -0.66 11.36 16 30 H 0.06 1.77 6.17 -2.39 -0.01 1.75 16 31 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 32 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.06 1.24 7.18 -2.39 -0.02 1.22 16 34 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 35 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 36 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 37 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 39 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.04 0.96 6.32 -2.39 -0.02 0.94 16 41 H 0.07 1.01 8.14 -2.39 -0.02 1.00 16 42 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -67.23 324.40 3.73 -63.50 By element: Atomic # 1 Polarization: 16.29 SS G_CDS: 0.32 Total: 16.61 kcal Atomic # 6 Polarization: -19.40 SS G_CDS: 3.59 Total: -15.82 kcal Atomic # 7 Polarization: -76.95 SS G_CDS: -2.15 Total: -79.10 kcal Atomic # 8 Polarization: -32.73 SS G_CDS: -0.05 Total: -32.78 kcal Atomic # 14 Polarization: 45.56 SS G_CDS: 2.03 Total: 47.59 kcal Total: -67.23 3.73 -63.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596924807.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.782 kcal (2) G-P(sol) polarization free energy of solvation -67.231 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.013 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds