Wall clock time and date at job start Mon Mar 30 2020 07:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09007 * 109.47566 * 2 1 4 4 C 1.50707 * 109.46837 * 119.99564 * 2 1 3 5 5 H 1.07998 * 119.99849 * 120.00198 * 4 2 1 6 6 C 1.37876 * 120.00239 * 299.99795 * 4 2 1 7 7 N 1.31509 * 119.99749 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00285 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46724 * 0.02562 * 8 6 4 10 10 H 1.48495 * 109.47099 * 120.00098 * 8 6 4 11 11 H 1.48495 * 109.47067 * 240.00730 * 8 6 4 12 12 C 1.50701 * 109.47405 * 239.99560 * 2 1 3 13 13 O 1.21278 * 120.00071 * 240.00258 * 12 2 1 14 14 N 1.34777 * 119.99788 * 60.00483 * 12 2 1 15 15 C 1.46500 * 119.99995 * 180.02562 * 14 12 2 16 16 H 1.09001 * 109.46596 * 324.99417 * 15 14 12 17 17 C 1.52997 * 109.47473 * 84.99514 * 15 14 12 18 18 C 1.52999 * 109.46991 * 59.99688 * 17 15 14 19 19 C 1.53006 * 109.46626 * 60.00378 * 18 17 15 20 20 H 1.09001 * 109.46801 * 59.99811 * 19 18 17 21 21 C 1.52999 * 109.46623 * 179.97438 * 19 18 17 22 22 C 1.52997 * 109.47127 * 299.99539 * 19 18 17 23 23 C 1.52996 * 109.47249 * 204.99819 * 15 14 12 24 24 H 1.08996 * 109.47452 * 179.97438 * 23 15 14 25 25 C 1.52997 * 109.47131 * 59.99486 * 23 15 14 26 26 H 1.09004 * 109.46537 * 60.00016 * 1 2 3 27 27 H 1.08998 * 109.47093 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.46863 * 300.00805 * 1 2 3 29 29 H 0.97004 * 120.00270 * 180.02562 * 7 6 4 30 30 H 0.96995 * 120.00034 * 359.97438 * 14 12 2 31 31 H 1.09002 * 109.47153 * 300.00243 * 17 15 14 32 32 H 1.08993 * 109.47194 * 180.02562 * 17 15 14 33 33 H 1.08993 * 109.47839 * 300.00447 * 18 17 15 34 34 H 1.09000 * 109.47160 * 180.02562 * 18 17 15 35 35 H 1.09001 * 109.47362 * 60.00551 * 21 19 18 36 36 H 1.09002 * 109.46716 * 179.97438 * 21 19 18 37 37 H 1.09000 * 109.47486 * 299.99829 * 21 19 18 38 38 H 1.09002 * 109.47153 * 180.02562 * 22 19 18 39 39 H 1.08996 * 109.46952 * 300.00302 * 22 19 18 40 40 H 1.09000 * 109.47611 * 300.00622 * 25 23 15 41 41 H 1.09001 * 109.47289 * 60.00050 * 25 23 15 42 42 H 1.09002 * 109.47153 * 180.02562 * 25 23 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 0.9428 0.8298 2.6034 8 14 2.3212 -1.1201 4.0081 9 1 3.1462 -2.2868 3.6040 10 1 3.1464 -0.1871 4.8166 11 1 1.1659 -1.5864 4.8161 12 6 2.0324 -0.7105 -1.2304 13 8 2.7296 -1.6966 -1.1190 14 7 1.7069 -0.2500 -2.4545 15 6 2.1948 -0.9410 -3.6507 16 1 3.1939 -1.3335 -3.4613 17 6 1.2503 -2.0946 -3.9942 18 6 -0.1521 -1.5437 -4.2599 19 6 -0.1003 -0.5607 -5.4313 20 1 0.2628 -1.0749 -6.3212 21 6 -1.5028 -0.0102 -5.6974 22 6 0.8442 0.5929 -5.0877 23 6 2.2466 0.0419 -4.8220 24 1 2.6100 -0.4721 -5.7118 25 6 3.1910 1.1954 -4.4784 26 1 -0.3632 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 0.7087 1.1615 3.4843 30 1 1.1490 0.5384 -2.5436 31 1 1.2135 -2.7949 -3.1597 32 1 1.6136 -2.6089 -4.8839 33 1 -0.5152 -1.0296 -3.3701 34 1 -0.8251 -2.3655 -4.5042 35 1 -1.8662 0.5038 -4.8076 36 1 -1.4659 0.6904 -6.5316 37 1 -2.1754 -0.8323 -5.9423 38 1 0.8807 1.2934 -5.9221 39 1 0.4811 1.1069 -4.1978 40 1 2.8281 1.7095 -3.5884 41 1 4.1902 0.8030 -4.2890 42 1 3.2276 1.8959 -5.3127 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597233118.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:28 Heat of formation + Delta-G solvation = -94.746263 kcal Electronic energy + Delta-G solvation = -20002.497386 eV Core-core repulsion = 17173.055913 eV Total energy + Delta-G solvation = -2829.441472 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.29065 -39.29754 -35.77322 -35.24563 -33.58840 -32.70625 -31.42517 -27.47910 -27.24760 -26.89737 -24.55733 -22.94916 -21.54808 -21.28649 -19.92612 -18.32164 -17.92186 -16.78800 -16.40650 -16.22012 -15.72119 -15.25436 -14.99360 -14.68646 -14.58499 -14.36068 -14.06317 -13.46737 -13.29762 -13.18944 -12.98066 -12.79711 -12.68891 -12.64423 -12.57324 -12.28301 -12.18207 -12.06381 -12.01703 -11.73380 -11.31460 -11.07284 -11.03187 -10.87288 -10.58865 -10.24664 -9.80767 -8.15363 -6.25444 1.38308 1.40049 1.53847 2.00343 2.38363 2.60252 3.14000 3.69128 3.80286 3.82972 4.13357 4.24291 4.33375 4.45277 4.51402 4.58204 4.66653 4.71085 4.74204 4.81852 4.88258 4.93759 4.97947 5.02588 5.05282 5.10457 5.15212 5.17801 5.26724 5.32299 5.43490 5.45784 5.49740 5.51207 5.64602 5.71926 5.81450 5.95403 6.22495 6.77668 6.90420 7.40892 7.62430 8.90722 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.030788 B = 0.005529 C = 0.005321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.234994 B = 5062.749455 C = 5260.664145 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.023 3.977 3 H 0.038 0.962 4 C -0.526 4.526 5 H 0.046 0.954 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.955 3.045 9 H -0.281 1.281 10 H -0.273 1.273 11 H -0.273 1.273 12 C 0.521 3.479 13 O -0.590 6.590 14 N -0.712 5.712 15 C 0.145 3.855 16 H 0.055 0.945 17 C -0.126 4.126 18 C -0.110 4.110 19 C -0.085 4.085 20 H 0.082 0.918 21 C -0.145 4.145 22 C -0.108 4.108 23 C -0.087 4.087 24 H 0.099 0.901 25 C -0.147 4.147 26 H 0.048 0.952 27 H 0.020 0.980 28 H 0.070 0.930 29 H 0.264 0.736 30 H 0.404 0.596 31 H 0.030 0.970 32 H 0.086 0.914 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.066 0.934 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.044 0.956 41 H 0.044 0.956 42 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.455 1.835 -18.840 19.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.002 3.998 3 H 0.055 0.945 4 C -0.565 4.565 5 H 0.065 0.935 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.199 1.199 12 C 0.310 3.690 13 O -0.471 6.471 14 N -0.366 5.366 15 C 0.041 3.959 16 H 0.073 0.927 17 C -0.165 4.165 18 C -0.147 4.147 19 C -0.103 4.103 20 H 0.100 0.900 21 C -0.203 4.203 22 C -0.145 4.145 23 C -0.105 4.105 24 H 0.117 0.883 25 C -0.204 4.204 26 H 0.067 0.933 27 H 0.039 0.961 28 H 0.089 0.911 29 H 0.074 0.926 30 H 0.241 0.759 31 H 0.049 0.951 32 H 0.105 0.895 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.066 0.934 36 H 0.085 0.915 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.063 0.937 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -3.038 1.257 -18.637 18.925 hybrid contribution 0.206 -0.257 1.350 1.390 sum -2.832 1.000 -17.287 17.546 Atomic orbital electron populations 1.21513 0.95159 0.99182 1.01478 1.18803 0.95243 0.95791 0.89993 0.94464 1.21312 1.31383 1.12585 0.91198 0.93544 1.25599 0.95231 0.95773 1.01419 1.69955 1.37309 1.23640 1.24209 0.85547 0.78355 0.78574 0.79431 1.20575 1.19890 1.19870 1.21453 0.78125 0.83652 0.85727 1.90492 1.40209 1.28785 1.87570 1.46075 1.53833 1.32045 1.04613 1.21000 0.96832 0.93151 0.84954 0.92712 1.21857 0.96569 0.97169 1.00880 1.21533 0.95567 0.99040 0.98589 1.21105 0.95961 0.95571 0.97663 0.89985 1.21808 0.95678 1.01089 1.01679 1.21671 0.93118 0.97772 1.01966 1.21359 0.96811 0.95674 0.96698 0.88267 1.21816 0.98586 0.98159 1.01859 0.93305 0.96070 0.91127 0.92624 0.75918 0.95078 0.89546 0.93435 0.91741 0.93374 0.91455 0.92524 0.89567 0.92722 0.93687 0.93689 0.90386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.38 8.87 71.98 0.64 -4.75 16 2 C 0.02 1.18 2.64 -12.28 -0.03 1.15 16 3 H 0.04 2.00 8.14 -2.38 -0.02 1.98 16 4 C -0.53 -31.26 8.37 25.60 0.21 -31.05 16 5 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 6 C 0.02 1.07 5.30 84.66 0.45 1.51 16 7 N -0.91 -51.96 11.32 21.45 0.24 -51.72 16 8 Si 0.96 45.79 29.54 68.60 2.03 47.82 16 9 H -0.28 -13.78 7.11 99.48 0.71 -13.07 16 10 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 C 0.52 24.56 7.11 87.66 0.62 25.18 16 13 O -0.59 -32.45 15.12 -3.02 -0.05 -32.49 16 14 N -0.71 -24.70 3.43 -442.54 -1.52 -26.22 16 15 C 0.15 4.24 2.23 44.99 0.10 4.34 16 16 H 0.05 1.91 7.58 -2.39 -0.02 1.89 16 17 C -0.13 -3.45 5.60 30.59 0.17 -3.28 16 18 C -0.11 -2.54 5.05 30.60 0.15 -2.38 16 19 C -0.08 -1.45 2.72 -10.79 -0.03 -1.48 16 20 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 21 C -0.15 -2.21 9.19 71.98 0.66 -1.55 16 22 C -0.11 -1.86 4.31 30.59 0.13 -1.73 16 23 C -0.09 -1.75 2.51 -10.79 -0.03 -1.78 16 24 H 0.10 1.66 8.14 -2.39 -0.02 1.64 16 25 C -0.15 -3.06 9.04 71.98 0.65 -2.41 16 26 H 0.05 1.85 7.56 -2.38 -0.02 1.83 16 27 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 28 H 0.07 3.63 6.07 -2.39 -0.01 3.61 16 29 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 30 H 0.40 12.27 6.07 -92.71 -0.56 11.71 16 31 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 32 H 0.09 1.93 8.14 -2.39 -0.02 1.91 16 33 H 0.05 1.29 7.60 -2.39 -0.02 1.27 16 34 H 0.06 1.39 8.14 -2.39 -0.02 1.37 16 35 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 36 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 37 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 38 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 39 H 0.05 1.06 6.50 -2.39 -0.02 1.05 16 40 H 0.04 1.07 7.45 -2.39 -0.02 1.05 16 41 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -67.73 323.42 4.82 -62.90 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: 0.41 Total: 17.93 kcal Atomic # 6 Polarization: -21.93 SS G_CDS: 3.71 Total: -18.22 kcal Atomic # 7 Polarization: -76.66 SS G_CDS: -1.28 Total: -77.94 kcal Atomic # 8 Polarization: -32.45 SS G_CDS: -0.05 Total: -32.49 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -67.73 4.82 -62.90 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597233118.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.842 kcal (2) G-P(sol) polarization free energy of solvation -67.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds