Wall clock time and date at job start Mon Mar 30 2020 07:01:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00090 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99290 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46926 * 60.00146 * 8 6 4 10 10 H 1.48500 * 109.47454 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47297 * 300.00528 * 8 6 4 12 12 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 13 13 O 1.21289 * 119.99568 * 120.00122 * 12 2 1 14 14 N 1.34767 * 120.00195 * 300.00281 * 12 2 1 15 15 C 1.46505 * 119.99942 * 179.97438 * 14 12 2 16 16 H 1.08996 * 109.47166 * 324.99863 * 15 14 12 17 17 C 1.52997 * 109.46955 * 85.00339 * 15 14 12 18 18 H 1.08996 * 109.47573 * 59.99772 * 17 15 14 19 19 C 1.53005 * 109.46968 * 299.99668 * 17 15 14 20 20 C 1.53000 * 109.47260 * 180.02562 * 17 15 14 21 21 C 1.53005 * 109.46750 * 299.99668 * 20 17 15 22 22 C 1.52997 * 109.46968 * 60.00153 * 21 20 17 23 23 C 1.53000 * 109.47260 * 299.99535 * 22 21 20 24 24 H 1.08996 * 109.47122 * 300.00637 * 23 22 21 25 25 C 1.52997 * 109.47260 * 179.97438 * 23 22 21 26 26 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 27 27 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 30 30 H 0.96996 * 120.00452 * 0.02562 * 14 12 2 31 31 H 1.08996 * 109.46711 * 60.00335 * 19 17 15 32 32 H 1.09000 * 109.46757 * 179.97438 * 19 17 15 33 33 H 1.08996 * 109.47059 * 300.00419 * 19 17 15 34 34 H 1.08997 * 109.47639 * 179.97438 * 20 17 15 35 35 H 1.09005 * 109.47209 * 59.99318 * 20 17 15 36 36 H 1.08996 * 109.47059 * 299.99734 * 21 20 17 37 37 H 1.09004 * 109.46991 * 179.97438 * 21 20 17 38 38 H 1.08998 * 109.47067 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.47573 * 59.99896 * 22 21 20 40 40 H 1.08996 * 109.47573 * 300.00361 * 25 23 22 41 41 H 1.09000 * 109.46857 * 60.00785 * 25 23 22 42 42 H 1.09004 * 109.47105 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.8259 -2.5200 -4.0078 10 1 1.8269 -0.4197 -5.2205 11 1 3.8064 -1.1207 -4.0083 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1948 -0.9410 3.6506 16 1 2.2311 -2.0137 3.4612 17 6 3.5974 -0.4360 3.9947 18 1 3.5611 0.6367 4.1842 19 6 4.5416 -0.7154 2.8236 20 6 4.1073 -1.1581 5.2436 21 6 3.1633 -0.8792 6.4150 22 6 1.7607 -1.3842 6.0709 23 6 1.2508 -0.6621 4.8220 24 1 1.2144 0.4105 5.0119 25 6 -0.1516 -1.1676 4.4776 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7094 1.1619 -3.4844 30 1 1.1489 0.5384 2.5436 31 1 4.1785 -0.2013 1.9337 32 1 5.5408 -0.3552 3.0686 33 1 4.5779 -1.7881 2.6341 34 1 5.1068 -0.7987 5.4885 35 1 4.1437 -2.2308 5.0537 36 1 3.1270 0.1934 6.6049 37 1 3.5263 -1.3940 7.3046 38 1 1.0883 -1.1860 6.9055 39 1 1.7970 -2.4569 5.8809 40 1 -0.1148 -2.2402 4.2875 41 1 -0.8244 -0.9692 5.3119 42 1 -0.5147 -0.6535 3.5876 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597268989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:10 Heat of formation + Delta-G solvation = -75.965383 kcal Electronic energy + Delta-G solvation = -20039.911569 eV Core-core repulsion = 17211.284496 eV Total energy + Delta-G solvation = -2828.627072 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.90099 -37.73881 -33.72772 -33.64076 -33.19835 -30.87386 -29.65502 -26.16352 -26.04067 -25.07725 -22.77235 -21.29824 -20.57407 -19.90164 -19.00628 -16.41605 -15.97107 -15.46244 -14.97152 -14.61006 -14.40211 -14.04864 -13.79930 -13.23680 -13.12989 -12.50095 -12.36898 -12.30529 -12.04458 -11.97742 -11.63059 -11.42859 -11.04837 -10.94603 -10.92336 -10.69181 -10.65717 -10.61987 -10.38174 -10.25487 -10.17624 -10.00464 -9.85455 -8.93261 -8.50819 -8.26191 -8.19197 -5.98826 -4.01517 3.38646 3.40935 3.46563 3.84243 3.99607 4.50911 4.65525 4.76331 4.89328 5.10708 5.20071 5.34418 5.43700 5.45638 5.51096 5.53672 5.70645 5.76714 5.92690 5.97496 5.98996 6.08020 6.09746 6.18507 6.25696 6.26753 6.37132 6.41209 6.46202 6.64904 6.69295 6.86091 6.92906 6.99196 7.26845 7.53591 7.80691 8.04771 8.22903 8.55556 9.07378 9.37362 9.64093 11.08767 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.034244 B = 0.005618 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.454269 B = 4983.100223 C = 5482.569997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.049 0.951 4 C -0.498 4.498 5 H 0.073 0.927 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.277 1.277 12 C 0.521 3.479 13 O -0.542 6.542 14 N -0.741 5.741 15 C 0.156 3.844 16 H 0.081 0.919 17 C -0.099 4.099 18 H 0.064 0.936 19 C -0.139 4.139 20 C -0.112 4.112 21 C -0.120 4.120 22 C -0.110 4.110 23 C -0.098 4.098 24 H 0.071 0.929 25 C -0.146 4.146 26 H 0.011 0.989 27 H 0.091 0.909 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.393 0.607 31 H 0.063 0.937 32 H 0.038 0.962 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.051 0.949 42 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.432 -0.366 16.794 16.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.067 0.933 4 C -0.536 4.536 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.203 1.203 12 C 0.310 3.690 13 O -0.418 6.418 14 N -0.394 5.394 15 C 0.050 3.950 16 H 0.099 0.901 17 C -0.119 4.119 18 H 0.083 0.917 19 C -0.196 4.196 20 C -0.150 4.150 21 C -0.157 4.157 22 C -0.148 4.148 23 C -0.117 4.117 24 H 0.090 0.910 25 C -0.204 4.204 26 H 0.030 0.970 27 H 0.110 0.890 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.226 0.774 31 H 0.082 0.918 32 H 0.057 0.943 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.081 0.919 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.080 0.920 39 H 0.082 0.918 40 H 0.073 0.927 41 H 0.070 0.930 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.862 -0.990 16.532 16.584 hybrid contribution 0.009 0.042 -0.779 0.780 sum 0.871 -0.948 15.753 15.806 Atomic orbital electron populations 1.21729 0.96731 0.99679 1.00777 1.18856 0.94029 0.96742 0.89650 0.93306 1.21111 1.30795 1.12707 0.89034 0.90871 1.24948 0.95188 0.95086 0.99069 1.69866 1.37229 1.23127 1.23516 0.86532 0.79254 0.79716 0.81759 1.20258 1.21441 1.20254 1.21806 0.78363 0.84340 0.84455 1.90530 1.37641 1.26905 1.86734 1.46324 1.55075 1.32417 1.05538 1.20863 0.91662 0.98029 0.84434 0.90098 1.21534 0.95601 0.99638 0.95118 0.91720 1.21860 0.97099 1.02749 0.97902 1.21582 0.98358 1.00787 0.94310 1.21557 0.95257 1.01039 0.97869 1.21549 0.96228 1.00240 0.96808 1.21385 0.95169 1.00408 0.94709 0.91047 1.21810 0.95584 1.01589 1.01379 0.97020 0.89002 0.95109 0.93006 0.77386 0.91796 0.94340 0.92039 0.92148 0.91928 0.92112 0.92236 0.91957 0.91836 0.92719 0.93009 0.92003 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 8.87 37.16 0.33 -2.69 16 2 C 0.03 0.70 2.64 -92.92 -0.25 0.46 16 3 H 0.05 1.27 8.14 -51.93 -0.42 0.84 16 4 C -0.50 -14.16 8.37 -34.44 -0.29 -14.45 16 5 H 0.07 2.19 6.75 -52.48 -0.35 1.84 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -25.38 11.32 55.43 0.63 -24.75 16 8 Si 0.90 22.04 29.54 -169.99 -5.02 17.01 16 9 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.52 11.59 5.50 -10.99 -0.06 11.53 16 13 O -0.54 -13.62 12.58 5.55 0.07 -13.55 16 14 N -0.74 -12.71 4.17 -53.81 -0.22 -12.93 16 15 C 0.16 2.31 1.63 -67.93 -0.11 2.20 16 16 H 0.08 1.40 7.58 -51.93 -0.39 1.01 16 17 C -0.10 -1.39 2.43 -90.62 -0.22 -1.61 16 18 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 19 C -0.14 -2.35 7.72 37.16 0.29 -2.06 16 20 C -0.11 -1.29 5.20 -26.73 -0.14 -1.43 16 21 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 22 C -0.11 -1.10 5.20 -26.73 -0.14 -1.24 16 23 C -0.10 -1.13 2.30 -90.62 -0.21 -1.34 16 24 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 25 C -0.15 -1.70 9.03 37.16 0.34 -1.37 16 26 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 27 H 0.09 2.34 6.07 -51.93 -0.32 2.02 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 30 H 0.39 6.00 7.80 -40.82 -0.32 5.68 16 31 H 0.06 1.28 5.77 -51.93 -0.30 0.98 16 32 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.06 1.13 7.53 -51.93 -0.39 0.74 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 41 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 0.78 7.44 -51.93 -0.39 0.40 16 LS Contribution 319.73 15.07 4.82 4.82 Total: -1.00 -29.76 319.73 -7.93 -37.69 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.48 Total: 3.52 kcal Atomic # 6 Polarization: -11.09 SS G_CDS: -0.71 Total: -11.81 kcal Atomic # 7 Polarization: -38.09 SS G_CDS: 0.40 Total: -37.69 kcal Atomic # 8 Polarization: -13.62 SS G_CDS: 0.07 Total: -13.55 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.02 Total: 17.01 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -29.76 -7.93 -37.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597268989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.277 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.689 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds