Wall clock time and date at job start Mon Mar 30 2020 07:01:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.47002 * 2 1 4 4 C 1.50698 * 109.47184 * 240.00595 * 2 1 3 5 5 H 1.08003 * 120.00057 * 240.00090 * 4 2 1 6 6 C 1.37876 * 120.00356 * 59.99290 * 4 2 1 7 7 N 1.31519 * 119.99989 * 0.02562 * 6 4 2 8 8 Si 1.86798 * 120.00260 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.46926 * 60.00146 * 8 6 4 10 10 H 1.48500 * 109.47454 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.47297 * 300.00528 * 8 6 4 12 12 C 1.50697 * 109.47239 * 119.99930 * 2 1 3 13 13 O 1.21289 * 119.99568 * 120.00122 * 12 2 1 14 14 N 1.34767 * 120.00195 * 300.00281 * 12 2 1 15 15 C 1.46505 * 119.99942 * 179.97438 * 14 12 2 16 16 H 1.08996 * 109.47166 * 324.99863 * 15 14 12 17 17 C 1.52997 * 109.46955 * 85.00339 * 15 14 12 18 18 H 1.08996 * 109.47573 * 59.99772 * 17 15 14 19 19 C 1.53005 * 109.46968 * 299.99668 * 17 15 14 20 20 C 1.53000 * 109.47260 * 180.02562 * 17 15 14 21 21 C 1.53005 * 109.46750 * 299.99668 * 20 17 15 22 22 C 1.52997 * 109.46968 * 60.00153 * 21 20 17 23 23 C 1.53000 * 109.47260 * 299.99535 * 22 21 20 24 24 H 1.08996 * 109.47122 * 300.00637 * 23 22 21 25 25 C 1.52997 * 109.47260 * 179.97438 * 23 22 21 26 26 H 1.09000 * 109.47050 * 299.99734 * 1 2 3 27 27 H 1.09001 * 109.46801 * 59.99846 * 1 2 3 28 28 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 29 29 H 0.96996 * 119.99885 * 179.97438 * 7 6 4 30 30 H 0.96996 * 120.00452 * 0.02562 * 14 12 2 31 31 H 1.08996 * 109.46711 * 60.00335 * 19 17 15 32 32 H 1.09000 * 109.46757 * 179.97438 * 19 17 15 33 33 H 1.08996 * 109.47059 * 300.00419 * 19 17 15 34 34 H 1.08997 * 109.47639 * 179.97438 * 20 17 15 35 35 H 1.09005 * 109.47209 * 59.99318 * 20 17 15 36 36 H 1.08996 * 109.47059 * 299.99734 * 21 20 17 37 37 H 1.09004 * 109.46991 * 179.97438 * 21 20 17 38 38 H 1.08998 * 109.47067 * 179.97438 * 22 21 20 39 39 H 1.08996 * 109.47573 * 59.99896 * 22 21 20 40 40 H 1.08996 * 109.47573 * 300.00361 * 25 23 22 41 41 H 1.09000 * 109.46857 * 60.00785 * 25 23 22 42 42 H 1.09004 * 109.47105 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4828 7 7 0.9434 0.8303 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.8259 -2.5200 -4.0078 10 1 1.8269 -0.4197 -5.2205 11 1 3.8064 -1.1207 -4.0083 12 6 2.0324 -0.7104 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1948 -0.9410 3.6506 16 1 2.2311 -2.0137 3.4612 17 6 3.5974 -0.4360 3.9947 18 1 3.5611 0.6367 4.1842 19 6 4.5416 -0.7154 2.8236 20 6 4.1073 -1.1581 5.2436 21 6 3.1633 -0.8792 6.4150 22 6 1.7607 -1.3842 6.0709 23 6 1.2508 -0.6621 4.8220 24 1 1.2144 0.4105 5.0119 25 6 -0.1516 -1.1676 4.4776 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 0.7094 1.1619 -3.4844 30 1 1.1489 0.5384 2.5436 31 1 4.1785 -0.2013 1.9337 32 1 5.5408 -0.3552 3.0686 33 1 4.5779 -1.7881 2.6341 34 1 5.1068 -0.7987 5.4885 35 1 4.1437 -2.2308 5.0537 36 1 3.1270 0.1934 6.6049 37 1 3.5263 -1.3940 7.3046 38 1 1.0883 -1.1860 6.9055 39 1 1.7970 -2.4569 5.8809 40 1 -0.1148 -2.2402 4.2875 41 1 -0.8244 -0.9692 5.3119 42 1 -0.5147 -0.6535 3.5876 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597268989.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:09 Heat of formation + Delta-G solvation = -93.269213 kcal Electronic energy + Delta-G solvation = -20040.661919 eV Core-core repulsion = 17211.284496 eV Total energy + Delta-G solvation = -2829.377423 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.27479 -39.18999 -35.74690 -34.99790 -34.34293 -32.64524 -31.06973 -27.42658 -27.15130 -27.05900 -24.47672 -22.47169 -21.67867 -21.13527 -20.49076 -18.35279 -17.71657 -17.04983 -16.41744 -16.27369 -15.69506 -15.12641 -14.95339 -14.76007 -14.64286 -14.07803 -13.72674 -13.53931 -13.30349 -13.23881 -13.14221 -12.94234 -12.68349 -12.57719 -12.53995 -12.18804 -12.12747 -11.98977 -11.84522 -11.66817 -11.37335 -11.25069 -11.06809 -11.00162 -10.56166 -10.15406 -9.71159 -8.14096 -6.23951 1.39923 1.41372 1.49979 2.05918 2.38311 2.60483 3.15361 3.63133 3.81822 3.92471 4.13837 4.23607 4.35672 4.43732 4.49799 4.55887 4.59994 4.75086 4.76244 4.83931 4.88188 4.92400 4.96090 5.01126 5.04160 5.06343 5.20344 5.27440 5.30577 5.34293 5.35126 5.43619 5.50463 5.51428 5.61279 5.73628 5.83983 5.97205 6.24323 6.79403 6.93799 7.42242 7.67913 8.91508 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.034244 B = 0.005618 C = 0.005106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 817.454269 B = 4983.100223 C = 5482.569997 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.023 3.977 3 H 0.035 0.965 4 C -0.525 4.525 5 H 0.047 0.953 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.954 3.046 9 H -0.277 1.277 10 H -0.274 1.274 11 H -0.277 1.277 12 C 0.524 3.476 13 O -0.578 6.578 14 N -0.721 5.721 15 C 0.154 3.846 16 H 0.051 0.949 17 C -0.095 4.095 18 H 0.077 0.923 19 C -0.134 4.134 20 C -0.109 4.109 21 C -0.114 4.114 22 C -0.108 4.108 23 C -0.090 4.090 24 H 0.088 0.912 25 C -0.146 4.146 26 H 0.050 0.950 27 H 0.068 0.932 28 H 0.020 0.980 29 H 0.264 0.736 30 H 0.405 0.595 31 H 0.026 0.974 32 H 0.056 0.944 33 H 0.036 0.964 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.072 0.928 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.041 0.959 41 H 0.076 0.924 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.008 0.364 19.023 19.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.002 3.998 3 H 0.053 0.947 4 C -0.564 4.564 5 H 0.066 0.934 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.202 1.202 10 H -0.199 1.199 11 H -0.203 1.203 12 C 0.313 3.687 13 O -0.457 6.457 14 N -0.373 5.373 15 C 0.049 3.951 16 H 0.070 0.930 17 C -0.115 4.115 18 H 0.096 0.904 19 C -0.191 4.191 20 C -0.147 4.147 21 C -0.152 4.152 22 C -0.146 4.146 23 C -0.109 4.109 24 H 0.107 0.893 25 C -0.203 4.203 26 H 0.069 0.931 27 H 0.087 0.913 28 H 0.039 0.961 29 H 0.073 0.927 30 H 0.240 0.760 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.055 0.945 34 H 0.091 0.909 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.096 0.904 38 H 0.105 0.895 39 H 0.074 0.926 40 H 0.060 0.940 41 H 0.095 0.905 42 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.398 -0.229 18.800 18.805 hybrid contribution 0.164 -0.173 -1.457 1.477 sum 0.562 -0.402 17.342 17.356 Atomic orbital electron populations 1.21532 0.95282 0.99191 1.01534 1.18788 0.95179 0.95702 0.90123 0.94726 1.21257 1.31368 1.12597 0.91166 0.93440 1.25588 0.95279 0.95776 1.01377 1.69947 1.37320 1.23597 1.24244 0.85685 0.78610 0.78744 0.79020 1.20239 1.19905 1.20305 1.21282 0.78162 0.83795 0.85435 1.90513 1.39324 1.28510 1.87397 1.46060 1.54047 1.32314 1.04856 1.21055 0.93457 0.96087 0.84475 0.93025 1.21519 0.94135 1.00689 0.95118 0.90436 1.21775 0.98915 1.00610 0.97818 1.21555 0.99608 0.99760 0.93753 1.21543 0.94237 1.02052 0.97340 1.21562 0.97027 0.99549 0.96452 1.21376 0.94062 1.01721 0.93704 0.89322 1.21815 0.96125 1.00559 1.01844 0.93083 0.91291 0.96062 0.92684 0.75950 0.95450 0.92527 0.94482 0.90943 0.92989 0.90901 0.90358 0.89544 0.92610 0.94027 0.90485 0.93317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.44 8.87 71.98 0.64 -4.80 16 2 C 0.02 1.19 2.64 -12.29 -0.03 1.16 16 3 H 0.03 1.86 8.14 -2.39 -0.02 1.84 16 4 C -0.53 -30.94 8.37 25.60 0.21 -30.72 16 5 H 0.05 2.99 6.75 -2.91 -0.02 2.97 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -51.97 11.32 21.45 0.24 -51.73 16 8 Si 0.95 45.76 29.54 68.60 2.03 47.79 16 9 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 10 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 12 C 0.52 24.08 5.50 87.66 0.48 24.57 16 13 O -0.58 -30.54 12.58 -3.06 -0.04 -30.58 16 14 N -0.72 -24.61 4.17 -442.53 -1.84 -26.45 16 15 C 0.15 4.46 1.63 44.99 0.07 4.54 16 16 H 0.05 1.83 7.58 -2.39 -0.02 1.81 16 17 C -0.10 -2.56 2.43 -10.79 -0.03 -2.59 16 18 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 19 C -0.13 -4.63 7.72 71.98 0.56 -4.07 16 20 C -0.11 -2.27 5.20 30.60 0.16 -2.11 16 21 C -0.11 -1.77 5.92 30.59 0.18 -1.59 16 22 C -0.11 -1.78 5.20 30.59 0.16 -1.62 16 23 C -0.09 -1.83 2.30 -10.79 -0.02 -1.86 16 24 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 25 C -0.15 -3.07 9.03 71.98 0.65 -2.42 16 26 H 0.05 1.90 7.56 -2.39 -0.02 1.88 16 27 H 0.07 3.53 6.07 -2.39 -0.01 3.52 16 28 H 0.02 0.97 8.14 -2.39 -0.02 0.96 16 29 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 30 H 0.40 11.83 7.80 -92.71 -0.72 11.11 16 31 H 0.03 1.12 5.77 -2.39 -0.01 1.11 16 32 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 33 H 0.04 1.43 7.53 -2.39 -0.02 1.41 16 34 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 35 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 36 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 37 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 41 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.05 1.14 7.44 -2.38 -0.02 1.12 16 Total: -1.00 -66.80 319.73 4.12 -62.68 By element: Atomic # 1 Polarization: 18.04 SS G_CDS: 0.25 Total: 18.30 kcal Atomic # 6 Polarization: -23.49 SS G_CDS: 3.48 Total: -20.01 kcal Atomic # 7 Polarization: -76.58 SS G_CDS: -1.60 Total: -78.18 kcal Atomic # 8 Polarization: -30.54 SS G_CDS: -0.04 Total: -30.58 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -66.80 4.12 -62.68 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597268989.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.587 kcal (2) G-P(sol) polarization free energy of solvation -66.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.390 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.682 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds