Wall clock time and date at job start Mon Mar 30 2020 07:25:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 C 1.50698 * 109.46561 * 119.99601 * 2 1 3 13 13 O 1.21287 * 119.99891 * 119.99995 * 12 2 1 14 14 N 1.34770 * 120.00389 * 299.99921 * 12 2 1 15 15 C 1.46507 * 120.00402 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.47118 * 275.00136 * 15 14 12 17 17 C 1.53001 * 109.46758 * 179.97438 * 16 15 14 18 18 H 1.09002 * 109.46974 * 299.99840 * 17 16 15 19 19 C 1.53000 * 109.46758 * 180.02562 * 17 16 15 20 20 C 1.52991 * 109.47394 * 60.00159 * 17 16 15 21 21 C 1.53000 * 109.47038 * 299.99669 * 20 17 16 22 22 H 1.09005 * 109.47618 * 179.97438 * 21 20 17 23 23 C 1.53003 * 109.47332 * 300.00152 * 21 20 17 24 24 C 1.53003 * 109.47028 * 154.99963 * 15 14 12 25 25 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 27 27 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 28 28 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 29 29 H 0.97004 * 120.00047 * 0.02562 * 14 12 2 30 30 H 1.09002 * 109.46755 * 35.00062 * 15 14 12 31 31 H 1.08996 * 109.46824 * 299.99492 * 16 15 14 32 32 H 1.08998 * 109.46973 * 59.99645 * 16 15 14 33 33 H 1.09002 * 109.47247 * 299.99672 * 19 17 16 34 34 H 1.09006 * 109.46906 * 60.00029 * 19 17 16 35 35 H 1.08996 * 109.47211 * 179.97438 * 19 17 16 36 36 H 1.08996 * 109.47324 * 180.02562 * 20 17 16 37 37 H 1.08996 * 109.47641 * 59.99570 * 20 17 16 38 38 H 1.09001 * 109.47239 * 180.02562 * 23 21 20 39 39 H 1.08996 * 109.46863 * 300.00078 * 23 21 20 40 40 H 1.08998 * 109.47013 * 60.00121 * 23 21 20 41 41 H 1.09000 * 109.47143 * 299.99682 * 24 15 14 42 42 H 1.09002 * 109.47272 * 60.00416 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.8395 -2.5180 -4.0102 10 1 1.8329 -0.4161 -5.2204 11 1 3.8135 -1.1093 -4.0053 12 6 2.0322 -0.7103 1.2305 13 8 2.7295 -1.6965 1.1194 14 7 1.7066 -0.2499 2.4546 15 6 2.1953 -0.9401 3.6509 16 6 1.2517 -2.0943 3.9950 17 6 1.7625 -2.8155 5.2440 18 1 2.7618 -3.2073 5.0541 19 6 0.8192 -3.9700 5.5877 20 6 1.8142 -1.8325 6.4152 21 6 2.7578 -0.6784 6.0711 22 1 2.7943 0.0223 6.9054 23 6 4.1604 -1.2284 5.8046 24 6 2.2465 0.0433 4.8219 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 0.7043 1.1577 -3.4845 29 1 1.1487 0.5387 2.5435 30 1 3.1947 -1.3319 3.4615 31 1 0.2524 -1.7024 4.1844 32 1 1.2152 -2.7948 3.1607 33 1 -0.1802 -3.5786 5.7774 34 1 0.7829 -4.6703 4.7530 35 1 1.1833 -4.4841 6.4772 36 1 2.1785 -2.3462 7.3048 37 1 0.8150 -1.4406 6.6051 38 1 4.8328 -0.4061 5.5599 39 1 4.5242 -1.7422 6.6944 40 1 4.1236 -1.9287 4.9702 41 1 2.9188 0.8655 4.5768 42 1 1.2472 0.4351 5.0113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597281875.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:08 Heat of formation + Delta-G solvation = -77.917166 kcal Electronic energy + Delta-G solvation = -19636.463043 eV Core-core repulsion = 16807.751335 eV Total energy + Delta-G solvation = -2828.711708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.83150 -38.08244 -33.96448 -33.65881 -33.10986 -30.72066 -28.94483 -26.84847 -26.44310 -25.08824 -23.08127 -21.58558 -20.90580 -19.44595 -18.49004 -16.40210 -16.00399 -15.52738 -14.96345 -14.78641 -14.27987 -14.10985 -13.86439 -13.56989 -13.31082 -12.76306 -12.56997 -12.42451 -12.13938 -11.89209 -11.56500 -11.49480 -11.23789 -11.02186 -10.96602 -10.87814 -10.70422 -10.63330 -10.45430 -10.31940 -10.17068 -9.92957 -9.83528 -8.93570 -8.52190 -8.33208 -8.24470 -5.98889 -4.01741 3.38877 3.40969 3.46706 3.81516 3.95879 4.50631 4.61909 4.71944 4.87292 5.07440 5.11466 5.28599 5.34092 5.39084 5.47764 5.58644 5.63786 5.66444 5.70364 5.77828 5.88129 5.94909 5.98032 6.06443 6.12957 6.20864 6.26214 6.33875 6.36753 6.53042 6.61906 6.67587 6.88357 6.98603 7.24098 7.53302 7.80639 8.04496 8.22137 8.54094 9.07079 9.34273 9.63705 11.08642 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.034432 B = 0.004798 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.990210 B = 5833.756408 C = 5932.264296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.051 0.949 4 C -0.499 4.499 5 H 0.073 0.927 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.520 3.480 13 O -0.548 6.548 14 N -0.744 5.744 15 C 0.143 3.857 16 C -0.123 4.123 17 C -0.092 4.092 18 H 0.073 0.927 19 C -0.146 4.146 20 C -0.109 4.109 21 C -0.086 4.086 22 H 0.069 0.931 23 C -0.154 4.154 24 C -0.121 4.121 25 H 0.030 0.970 26 H 0.011 0.989 27 H 0.092 0.908 28 H 0.260 0.740 29 H 0.394 0.606 30 H 0.084 0.916 31 H 0.059 0.941 32 H 0.068 0.932 33 H 0.052 0.948 34 H 0.055 0.945 35 H 0.051 0.949 36 H 0.059 0.941 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.051 0.949 40 H 0.064 0.936 41 H 0.066 0.934 42 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.189 -1.860 18.022 18.118 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.068 0.932 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.310 3.690 13 O -0.424 6.424 14 N -0.397 5.397 15 C 0.038 3.962 16 C -0.161 4.161 17 C -0.111 4.111 18 H 0.091 0.909 19 C -0.203 4.203 20 C -0.146 4.146 21 C -0.105 4.105 22 H 0.088 0.912 23 C -0.212 4.212 24 C -0.159 4.159 25 H 0.049 0.951 26 H 0.030 0.970 27 H 0.111 0.889 28 H 0.070 0.930 29 H 0.227 0.773 30 H 0.102 0.898 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.071 0.929 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.072 0.928 39 H 0.071 0.929 40 H 0.083 0.917 41 H 0.085 0.915 42 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 0.253 -2.470 17.764 17.936 hybrid contribution -0.055 0.012 -0.776 0.778 sum 0.198 -2.458 16.988 17.166 Atomic orbital electron populations 1.21729 0.96618 0.99716 1.00834 1.18864 0.94099 0.96780 0.89545 0.93175 1.21114 1.30728 1.12873 0.89056 0.90892 1.24953 0.95179 0.95077 0.99079 1.69865 1.37035 1.23294 1.23535 0.86518 0.79281 0.79699 0.81689 1.20233 1.21407 1.20232 1.21927 0.78301 0.84244 0.84566 1.90517 1.38102 1.26940 1.86810 1.46368 1.55290 1.32407 1.05597 1.20840 0.98621 0.92164 0.84544 1.21982 0.98992 0.97849 0.97315 1.21141 0.99834 0.95289 0.94813 0.90853 1.21813 0.99337 0.98043 1.01110 1.21640 0.99356 0.95997 0.97629 1.21046 0.95345 0.96938 0.97180 0.91226 1.21977 0.95958 1.01371 1.01849 1.21846 1.01560 0.98096 0.94436 0.95102 0.96987 0.88912 0.92982 0.77307 0.89763 0.92192 0.91348 0.92885 0.92631 0.93005 0.92180 0.92036 0.92753 0.92940 0.91675 0.91478 0.91667 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.87 37.16 0.33 -2.73 16 2 C 0.03 0.71 2.64 -92.92 -0.25 0.47 16 3 H 0.05 1.31 8.14 -51.93 -0.42 0.89 16 4 C -0.50 -14.39 8.37 -34.44 -0.29 -14.67 16 5 H 0.07 2.22 6.75 -52.49 -0.35 1.86 16 6 C 0.06 1.62 5.31 -17.82 -0.09 1.52 16 7 N -0.90 -25.49 11.31 55.43 0.63 -24.86 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.10 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 10 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 12 C 0.52 12.01 7.11 -10.99 -0.08 11.93 16 13 O -0.55 -14.44 15.12 5.55 0.08 -14.36 16 14 N -0.74 -13.15 4.97 -53.80 -0.27 -13.41 16 15 C 0.14 2.16 2.18 -67.92 -0.15 2.01 16 16 C -0.12 -1.74 4.78 -26.73 -0.13 -1.87 16 17 C -0.09 -1.05 2.44 -90.62 -0.22 -1.27 16 18 H 0.07 0.89 6.43 -51.93 -0.33 0.56 16 19 C -0.15 -1.51 9.19 37.16 0.34 -1.16 16 20 C -0.11 -1.05 4.73 -26.74 -0.13 -1.18 16 21 C -0.09 -0.86 3.20 -90.59 -0.29 -1.14 16 22 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 23 C -0.15 -1.59 8.50 37.16 0.32 -1.27 16 24 C -0.12 -1.40 4.92 -26.70 -0.13 -1.53 16 25 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.01 0.22 7.56 -51.93 -0.39 -0.17 16 27 H 0.09 2.38 6.06 -51.93 -0.31 2.06 16 28 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 29 H 0.39 6.09 8.02 -40.82 -0.33 5.76 16 30 H 0.08 1.45 5.86 -51.93 -0.30 1.15 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 38 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 40 H 0.06 0.77 4.81 -51.93 -0.25 0.52 16 41 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 LS Contribution 322.29 15.07 4.86 4.86 Total: -1.00 -30.66 322.29 -7.82 -38.48 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: -7.33 Total: 3.11 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -0.76 Total: -10.90 kcal Atomic # 7 Polarization: -38.64 SS G_CDS: 0.36 Total: -38.28 kcal Atomic # 8 Polarization: -14.44 SS G_CDS: 0.08 Total: -14.36 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.66 -7.82 -38.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597281875.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.437 kcal (2) G-P(sol) polarization free energy of solvation -30.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.480 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds