Wall clock time and date at job start Mon Mar 30 2020 07:25:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48498 * 109.47416 * 59.99812 * 8 6 4 10 10 H 1.48508 * 109.46609 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46903 * 299.99397 * 8 6 4 12 12 C 1.50698 * 109.46561 * 119.99601 * 2 1 3 13 13 O 1.21287 * 119.99891 * 119.99995 * 12 2 1 14 14 N 1.34770 * 120.00389 * 299.99921 * 12 2 1 15 15 C 1.46507 * 120.00402 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.47118 * 275.00136 * 15 14 12 17 17 C 1.53001 * 109.46758 * 179.97438 * 16 15 14 18 18 H 1.09002 * 109.46974 * 299.99840 * 17 16 15 19 19 C 1.53000 * 109.46758 * 180.02562 * 17 16 15 20 20 C 1.52991 * 109.47394 * 60.00159 * 17 16 15 21 21 C 1.53000 * 109.47038 * 299.99669 * 20 17 16 22 22 H 1.09005 * 109.47618 * 179.97438 * 21 20 17 23 23 C 1.53003 * 109.47332 * 300.00152 * 21 20 17 24 24 C 1.53003 * 109.47028 * 154.99963 * 15 14 12 25 25 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 26 26 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 27 27 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 28 28 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 29 29 H 0.97004 * 120.00047 * 0.02562 * 14 12 2 30 30 H 1.09002 * 109.46755 * 35.00062 * 15 14 12 31 31 H 1.08996 * 109.46824 * 299.99492 * 16 15 14 32 32 H 1.08998 * 109.46973 * 59.99645 * 16 15 14 33 33 H 1.09002 * 109.47247 * 299.99672 * 19 17 16 34 34 H 1.09006 * 109.46906 * 60.00029 * 19 17 16 35 35 H 1.08996 * 109.47211 * 179.97438 * 19 17 16 36 36 H 1.08996 * 109.47324 * 180.02562 * 20 17 16 37 37 H 1.08996 * 109.47641 * 59.99570 * 20 17 16 38 38 H 1.09001 * 109.47239 * 180.02562 * 23 21 20 39 39 H 1.08996 * 109.46863 * 300.00078 * 23 21 20 40 40 H 1.08998 * 109.47013 * 60.00121 * 23 21 20 41 41 H 1.09000 * 109.47143 * 299.99682 * 24 15 14 42 42 H 1.09002 * 109.47272 * 60.00416 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 1.8395 -2.5180 -4.0102 10 1 1.8329 -0.4161 -5.2204 11 1 3.8135 -1.1093 -4.0053 12 6 2.0322 -0.7103 1.2305 13 8 2.7295 -1.6965 1.1194 14 7 1.7066 -0.2499 2.4546 15 6 2.1953 -0.9401 3.6509 16 6 1.2517 -2.0943 3.9950 17 6 1.7625 -2.8155 5.2440 18 1 2.7618 -3.2073 5.0541 19 6 0.8192 -3.9700 5.5877 20 6 1.8142 -1.8325 6.4152 21 6 2.7578 -0.6784 6.0711 22 1 2.7943 0.0223 6.9054 23 6 4.1604 -1.2284 5.8046 24 6 2.2465 0.0433 4.8219 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3632 0.5138 -0.8901 28 1 0.7043 1.1577 -3.4845 29 1 1.1487 0.5387 2.5435 30 1 3.1947 -1.3319 3.4615 31 1 0.2524 -1.7024 4.1844 32 1 1.2152 -2.7948 3.1607 33 1 -0.1802 -3.5786 5.7774 34 1 0.7829 -4.6703 4.7530 35 1 1.1833 -4.4841 6.4772 36 1 2.1785 -2.3462 7.3048 37 1 0.8150 -1.4406 6.6051 38 1 4.8328 -0.4061 5.5599 39 1 4.5242 -1.7422 6.6944 40 1 4.1236 -1.9287 4.9702 41 1 2.9188 0.8655 4.5768 42 1 1.2472 0.4351 5.0113 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597281875.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:25:06 Heat of formation + Delta-G solvation = -96.334610 kcal Electronic energy + Delta-G solvation = -19637.261683 eV Core-core repulsion = 16807.751335 eV Total energy + Delta-G solvation = -2829.510348 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 2.06 seconds Orbital eigenvalues (eV) -41.13590 -39.58590 -35.77718 -35.40096 -34.02344 -32.65767 -30.35018 -27.69141 -27.34564 -27.19349 -24.79687 -22.85375 -21.98448 -21.10626 -19.54966 -18.36251 -17.73292 -17.04765 -16.47467 -16.06730 -15.77701 -15.52802 -14.95985 -14.79717 -14.50815 -14.34677 -14.22390 -13.49407 -13.46426 -13.12475 -12.97197 -12.74306 -12.69851 -12.59644 -12.51843 -12.27165 -12.17504 -12.01254 -11.94782 -11.76525 -11.40354 -11.23788 -11.05563 -10.83024 -10.57818 -10.23074 -9.85897 -8.15166 -6.25587 1.39976 1.41678 1.50325 1.96864 2.36444 2.55608 3.14003 3.68179 3.80287 3.94617 4.13564 4.17906 4.33524 4.38318 4.45028 4.53206 4.61205 4.74444 4.75852 4.79261 4.82970 4.94586 4.95127 5.00244 5.01720 5.04498 5.15729 5.21602 5.22493 5.31096 5.38153 5.46322 5.48299 5.52273 5.62837 5.70440 5.78465 5.95151 6.22315 6.76561 6.89336 7.40230 7.59712 8.90371 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.034432 B = 0.004798 C = 0.004719 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.990210 B = 5833.756408 C = 5932.264296 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.023 3.977 3 H 0.040 0.960 4 C -0.530 4.530 5 H 0.046 0.954 6 C 0.020 3.980 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.277 1.277 10 H -0.273 1.273 11 H -0.277 1.277 12 C 0.521 3.479 13 O -0.589 6.589 14 N -0.724 5.724 15 C 0.140 3.860 16 C -0.117 4.117 17 C -0.089 4.089 18 H 0.061 0.939 19 C -0.144 4.144 20 C -0.103 4.103 21 C -0.082 4.082 22 H 0.095 0.905 23 C -0.155 4.155 24 C -0.114 4.114 25 H 0.020 0.980 26 H 0.051 0.949 27 H 0.071 0.929 28 H 0.265 0.735 29 H 0.408 0.592 30 H 0.058 0.942 31 H 0.071 0.929 32 H 0.027 0.973 33 H 0.061 0.939 34 H 0.039 0.961 35 H 0.070 0.930 36 H 0.078 0.922 37 H 0.073 0.927 38 H 0.051 0.949 39 H 0.068 0.932 40 H 0.041 0.959 41 H 0.067 0.933 42 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.893 -1.188 20.120 20.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.002 3.998 3 H 0.057 0.943 4 C -0.568 4.568 5 H 0.064 0.936 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.197 1.197 11 H -0.202 1.202 12 C 0.310 3.690 13 O -0.469 6.469 14 N -0.376 5.376 15 C 0.036 3.964 16 C -0.156 4.156 17 C -0.108 4.108 18 H 0.079 0.921 19 C -0.201 4.201 20 C -0.140 4.140 21 C -0.101 4.101 22 H 0.114 0.886 23 C -0.213 4.213 24 C -0.152 4.152 25 H 0.039 0.961 26 H 0.070 0.930 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.244 0.756 30 H 0.076 0.924 31 H 0.090 0.910 32 H 0.046 0.954 33 H 0.080 0.920 34 H 0.058 0.942 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.060 0.940 41 H 0.086 0.914 42 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.477 -1.762 19.902 19.986 hybrid contribution 0.176 -0.183 -1.404 1.427 sum -0.301 -1.945 18.498 18.602 Atomic orbital electron populations 1.21535 0.95061 0.99226 1.01697 1.18811 0.95341 0.95855 0.89816 0.94255 1.21255 1.31480 1.12846 0.91238 0.93556 1.25598 0.95221 0.95746 1.01388 1.69941 1.37008 1.23694 1.24342 0.85661 0.78657 0.78712 0.78892 1.20249 1.19749 1.20229 1.21515 0.78083 0.83651 0.85746 1.90495 1.40123 1.28742 1.87574 1.46138 1.54178 1.32340 1.04902 1.21053 0.97350 0.93447 0.84571 1.21912 0.99481 0.96813 0.97379 1.21120 0.99286 0.96062 0.94362 0.92097 1.21797 0.99585 0.97412 1.01294 1.21624 1.00063 0.95326 0.97030 1.21077 0.94740 0.97387 0.96887 0.88641 1.21979 0.96637 1.00965 1.01677 1.21834 1.02885 0.97127 0.93365 0.96124 0.92965 0.91067 0.92585 0.75647 0.92424 0.91033 0.95407 0.92022 0.94161 0.91149 0.90312 0.90820 0.92956 0.91305 0.94036 0.91400 0.89774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.46 8.87 71.98 0.64 -4.82 16 2 C 0.02 1.19 2.64 -12.29 -0.03 1.15 16 3 H 0.04 2.10 8.14 -2.39 -0.02 2.08 16 4 C -0.53 -31.50 8.37 25.60 0.21 -31.29 16 5 H 0.05 2.95 6.75 -2.92 -0.02 2.93 16 6 C 0.02 1.12 5.31 84.66 0.45 1.57 16 7 N -0.91 -51.87 11.31 21.45 0.24 -51.63 16 8 Si 0.96 45.77 29.54 68.60 2.03 47.80 16 9 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -13.19 7.11 99.48 0.71 -12.48 16 12 C 0.52 24.73 7.11 87.66 0.62 25.35 16 13 O -0.59 -32.63 15.12 -3.05 -0.05 -32.67 16 14 N -0.72 -25.40 4.97 -442.51 -2.20 -27.60 16 15 C 0.14 4.17 2.18 44.99 0.10 4.27 16 16 C -0.12 -3.30 4.78 30.59 0.15 -3.15 16 17 C -0.09 -1.94 2.44 -10.80 -0.03 -1.96 16 18 H 0.06 1.48 6.43 -2.39 -0.02 1.46 16 19 C -0.14 -2.74 9.19 71.98 0.66 -2.08 16 20 C -0.10 -1.64 4.73 30.59 0.14 -1.50 16 21 C -0.08 -1.37 3.20 -10.77 -0.03 -1.40 16 22 H 0.10 1.22 8.14 -2.38 -0.02 1.20 16 23 C -0.16 -2.95 8.50 71.98 0.61 -2.34 16 24 C -0.11 -2.35 4.92 30.61 0.15 -2.20 16 25 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 26 H 0.05 1.95 7.56 -2.39 -0.02 1.93 16 27 H 0.07 3.65 6.06 -2.38 -0.01 3.64 16 28 H 0.26 14.29 8.31 -92.71 -0.77 13.52 16 29 H 0.41 11.94 8.02 -92.71 -0.74 11.20 16 30 H 0.06 2.06 5.86 -2.39 -0.01 2.05 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 34 H 0.04 0.87 8.14 -2.38 -0.02 0.85 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 38 H 0.05 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 40 H 0.04 0.98 4.81 -2.39 -0.01 0.97 16 41 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -68.43 322.29 3.91 -64.52 By element: Atomic # 1 Polarization: 17.74 SS G_CDS: 0.24 Total: 17.98 kcal Atomic # 6 Polarization: -22.05 SS G_CDS: 3.65 Total: -18.40 kcal Atomic # 7 Polarization: -77.26 SS G_CDS: -1.96 Total: -79.22 kcal Atomic # 8 Polarization: -32.63 SS G_CDS: -0.05 Total: -32.67 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -68.43 3.91 -64.52 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597281875.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.816 kcal (2) G-P(sol) polarization free energy of solvation -68.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.519 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.06 seconds