Wall clock time and date at job start Mon Mar 30 2020 07:26:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47606 * 2 1 4 4 C 1.50700 * 109.46928 * 239.99773 * 2 1 3 5 5 H 1.08002 * 120.00024 * 240.00380 * 4 2 1 6 6 C 1.37876 * 119.99978 * 60.00634 * 4 2 1 7 7 N 1.31518 * 119.99858 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00272 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46917 * 59.99428 * 8 6 4 10 10 H 1.48494 * 109.47208 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46925 * 299.99696 * 8 6 4 12 12 C 1.50703 * 109.47038 * 120.00206 * 2 1 3 13 13 O 1.21285 * 120.00148 * 119.99604 * 12 2 1 14 14 N 1.34778 * 120.00048 * 299.99634 * 12 2 1 15 15 C 1.46496 * 119.99951 * 180.02562 * 14 12 2 16 16 H 1.09001 * 109.47459 * 325.00158 * 15 14 12 17 17 C 1.52997 * 109.47194 * 85.00164 * 15 14 12 18 18 C 1.53002 * 109.47415 * 59.99942 * 17 15 14 19 19 H 1.08996 * 109.46550 * 300.00288 * 18 17 15 20 20 C 1.52995 * 109.46925 * 180.02562 * 18 17 15 21 21 C 1.52996 * 109.46972 * 59.99860 * 18 17 15 22 22 C 1.52997 * 109.47165 * 300.00293 * 21 18 17 23 23 H 1.09000 * 109.47140 * 299.99954 * 22 21 18 24 24 C 1.53006 * 109.46974 * 180.02562 * 22 21 18 25 25 C 1.52999 * 109.47592 * 60.00300 * 22 21 18 26 26 H 1.09001 * 109.46557 * 299.99794 * 1 2 3 27 27 H 1.09000 * 109.47112 * 59.99765 * 1 2 3 28 28 H 1.08993 * 109.47212 * 180.02562 * 1 2 3 29 29 H 0.96995 * 119.99898 * 179.97438 * 7 6 4 30 30 H 0.96995 * 119.99605 * 0.02562 * 14 12 2 31 31 H 1.09000 * 109.47140 * 179.97438 * 17 15 14 32 32 H 1.09001 * 109.47230 * 299.99110 * 17 15 14 33 33 H 1.08992 * 109.47458 * 59.99987 * 20 18 17 34 34 H 1.09001 * 109.46885 * 180.02562 * 20 18 17 35 35 H 1.08999 * 109.47330 * 299.98997 * 20 18 17 36 36 H 1.09000 * 109.47054 * 60.00300 * 21 18 17 37 37 H 1.09001 * 109.46997 * 180.02562 * 21 18 17 38 38 H 1.09000 * 109.46866 * 299.99774 * 24 22 21 39 39 H 1.09001 * 109.47372 * 60.00182 * 24 22 21 40 40 H 1.09004 * 109.47107 * 179.97438 * 24 22 21 41 41 H 1.08993 * 109.47839 * 180.02562 * 25 22 21 42 42 H 1.09000 * 109.47160 * 59.99666 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.8256 -2.5202 -4.0077 10 1 1.8259 -0.4206 -5.2204 11 1 3.8063 -1.1211 -4.0082 12 6 2.0323 -0.7105 1.2305 13 8 2.7295 -1.6966 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 2.1955 -0.9403 3.6507 16 1 2.2326 -2.0132 3.4615 17 6 3.5980 -0.4344 3.9943 18 6 3.5461 1.0715 4.2600 19 1 3.1824 1.5850 3.3700 20 6 4.9486 1.5774 4.6029 21 6 2.6021 1.3504 5.4313 22 6 1.1997 0.8445 5.0877 23 1 0.8360 1.3581 4.1977 24 6 0.2556 1.1240 6.2589 25 6 1.2515 -0.6614 4.8221 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.7089 1.1614 -3.4843 30 1 1.1489 0.5384 2.5436 31 1 3.9614 -0.9477 4.8845 32 1 4.2705 -0.6332 3.1598 33 1 5.6207 1.3788 3.7682 34 1 4.9116 2.6502 4.7926 35 1 5.3126 1.0640 5.4928 36 1 2.9658 0.8368 6.3212 37 1 2.5648 2.4233 5.6203 38 1 0.6191 0.6107 7.1491 39 1 0.2186 2.1969 6.4477 40 1 -0.7437 0.7640 6.0139 41 1 0.2526 -1.0218 4.5769 42 1 1.6152 -1.1750 5.7120 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597281876.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:04 Heat of formation + Delta-G solvation = -78.877396 kcal Electronic energy + Delta-G solvation = -19802.306019 eV Core-core repulsion = 16973.552673 eV Total energy + Delta-G solvation = -2828.753347 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.86341 -37.82529 -33.73445 -33.59086 -33.41442 -30.83427 -29.22003 -26.66063 -26.25158 -25.08447 -22.96738 -21.59655 -20.53495 -19.87774 -18.56902 -16.29211 -16.02055 -15.40458 -15.03496 -14.81870 -14.46330 -14.21893 -13.64458 -13.28712 -13.07280 -12.64898 -12.54721 -12.29037 -12.18870 -11.87287 -11.79840 -11.67058 -11.45980 -11.13238 -10.95946 -10.76773 -10.69622 -10.63856 -10.38475 -10.23046 -10.07258 -9.92229 -9.83928 -8.93310 -8.53147 -8.29887 -8.24929 -5.98679 -4.01430 3.39014 3.41146 3.46917 3.83567 4.03438 4.51518 4.65948 4.73264 4.76828 5.08143 5.16148 5.34420 5.36069 5.41574 5.50890 5.57552 5.64786 5.71291 5.77504 5.82995 5.89140 5.91111 5.95786 6.06904 6.11391 6.21599 6.27202 6.37333 6.49551 6.53706 6.55641 6.67132 6.88141 6.98881 7.26253 7.53554 7.80747 8.04832 8.22625 8.54983 9.07436 9.35754 9.64077 11.08944 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.029715 B = 0.005366 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.051266 B = 5216.417946 C = 5518.338277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.029 3.971 3 H 0.050 0.950 4 C -0.499 4.499 5 H 0.073 0.927 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.277 1.277 12 C 0.519 3.481 13 O -0.549 6.549 14 N -0.739 5.739 15 C 0.145 3.855 16 H 0.081 0.919 17 C -0.123 4.123 18 C -0.092 4.092 19 H 0.074 0.926 20 C -0.145 4.145 21 C -0.106 4.106 22 C -0.095 4.095 23 H 0.071 0.929 24 C -0.145 4.145 25 C -0.119 4.119 26 H 0.011 0.989 27 H 0.092 0.908 28 H 0.030 0.970 29 H 0.260 0.740 30 H 0.393 0.607 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.051 0.949 35 H 0.050 0.950 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.052 0.948 39 H 0.053 0.947 40 H 0.054 0.946 41 H 0.066 0.934 42 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.261 2.836 17.133 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.068 0.932 4 C -0.537 4.537 5 H 0.091 0.909 6 C -0.143 4.143 7 N -0.538 5.538 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.309 3.691 13 O -0.425 6.425 14 N -0.393 5.393 15 C 0.039 3.961 16 H 0.099 0.901 17 C -0.162 4.162 18 C -0.111 4.111 19 H 0.092 0.908 20 C -0.202 4.202 21 C -0.143 4.143 22 C -0.113 4.113 23 H 0.089 0.911 24 C -0.203 4.203 25 C -0.157 4.157 26 H 0.030 0.970 27 H 0.111 0.889 28 H 0.049 0.951 29 H 0.070 0.930 30 H 0.228 0.772 31 H 0.080 0.920 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.070 0.930 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.071 0.929 39 H 0.072 0.928 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.694 2.214 16.895 17.054 hybrid contribution 0.022 -0.007 -0.771 0.772 sum 0.716 2.208 16.124 16.290 Atomic orbital electron populations 1.21731 0.96689 0.99721 1.00801 1.18854 0.94045 0.96762 0.89593 0.93211 1.21115 1.30832 1.12722 0.89059 0.90898 1.24950 0.95172 0.95090 0.99071 1.69865 1.37195 1.23156 1.23534 0.86520 0.79259 0.79721 0.81707 1.20241 1.21419 1.20236 1.21917 0.78387 0.84171 0.84609 1.90516 1.38117 1.27007 1.86830 1.46388 1.55057 1.32467 1.05415 1.20759 0.92651 0.97703 0.84974 0.90104 1.21958 0.97618 0.95219 1.01360 1.21096 0.95097 0.96436 0.98466 0.90790 1.21804 0.96738 1.00441 1.01252 1.21643 0.94261 1.00407 0.98009 1.21139 0.95530 0.96092 0.98576 0.91091 1.21818 0.99192 1.01265 0.97999 1.21863 0.99891 0.96018 0.97957 0.97031 0.88934 0.95076 0.92988 0.77229 0.91956 0.91310 0.92660 0.93023 0.93096 0.92200 0.92260 0.92882 0.92820 0.92701 0.91485 0.91082 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.87 37.16 0.33 -2.73 16 2 C 0.03 0.72 2.64 -92.92 -0.25 0.47 16 3 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 4 C -0.50 -14.35 8.37 -34.44 -0.29 -14.64 16 5 H 0.07 2.22 6.75 -52.49 -0.35 1.86 16 6 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 7 N -0.90 -25.49 11.32 55.43 0.63 -24.86 16 8 Si 0.90 22.12 29.54 -169.99 -5.02 17.09 16 9 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 10 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 11 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 12 C 0.52 11.91 7.11 -10.98 -0.08 11.84 16 13 O -0.55 -14.41 15.12 5.55 0.08 -14.33 16 14 N -0.74 -12.87 4.13 -53.80 -0.22 -13.09 16 15 C 0.14 2.15 2.78 -67.93 -0.19 1.96 16 16 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 17 C -0.12 -1.71 4.88 -26.73 -0.13 -1.84 16 18 C -0.09 -1.14 2.56 -90.62 -0.23 -1.37 16 19 H 0.07 1.04 7.60 -51.93 -0.39 0.65 16 20 C -0.14 -1.61 9.19 37.16 0.34 -1.27 16 21 C -0.11 -1.08 4.49 -26.73 -0.12 -1.20 16 22 C -0.09 -0.98 2.55 -90.62 -0.23 -1.21 16 23 H 0.07 0.79 6.51 -51.93 -0.34 0.46 16 24 C -0.15 -1.27 9.19 37.16 0.34 -0.93 16 25 C -0.12 -1.36 4.89 -26.73 -0.13 -1.49 16 26 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 28 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 30 H 0.39 6.13 6.28 -40.82 -0.26 5.87 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 33 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 40 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 324.91 15.07 4.90 4.90 Total: -1.00 -30.48 324.91 -7.86 -38.34 By element: Atomic # 1 Polarization: 10.32 SS G_CDS: -7.50 Total: 2.82 kcal Atomic # 6 Polarization: -10.15 SS G_CDS: -0.73 Total: -10.88 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.41 Total: -37.95 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.08 Total: -14.33 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.48 -7.86 -38.34 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597281876.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.537 kcal (2) G-P(sol) polarization free energy of solvation -30.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.017 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.877 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds