Wall clock time and date at job start Mon Mar 30 2020 07:26:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47606 * 2 1 4 4 C 1.50700 * 109.46928 * 239.99773 * 2 1 3 5 5 H 1.08002 * 120.00024 * 240.00380 * 4 2 1 6 6 C 1.37876 * 119.99978 * 60.00634 * 4 2 1 7 7 N 1.31518 * 119.99858 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00272 * 180.02562 * 6 4 2 9 9 H 1.48499 * 109.46917 * 59.99428 * 8 6 4 10 10 H 1.48494 * 109.47208 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46925 * 299.99696 * 8 6 4 12 12 C 1.50703 * 109.47038 * 120.00206 * 2 1 3 13 13 O 1.21285 * 120.00148 * 119.99604 * 12 2 1 14 14 N 1.34778 * 120.00048 * 299.99634 * 12 2 1 15 15 C 1.46496 * 119.99951 * 180.02562 * 14 12 2 16 16 H 1.09001 * 109.47459 * 325.00158 * 15 14 12 17 17 C 1.52997 * 109.47194 * 85.00164 * 15 14 12 18 18 C 1.53002 * 109.47415 * 59.99942 * 17 15 14 19 19 H 1.08996 * 109.46550 * 300.00288 * 18 17 15 20 20 C 1.52995 * 109.46925 * 180.02562 * 18 17 15 21 21 C 1.52996 * 109.46972 * 59.99860 * 18 17 15 22 22 C 1.52997 * 109.47165 * 300.00293 * 21 18 17 23 23 H 1.09000 * 109.47140 * 299.99954 * 22 21 18 24 24 C 1.53006 * 109.46974 * 180.02562 * 22 21 18 25 25 C 1.52999 * 109.47592 * 60.00300 * 22 21 18 26 26 H 1.09001 * 109.46557 * 299.99794 * 1 2 3 27 27 H 1.09000 * 109.47112 * 59.99765 * 1 2 3 28 28 H 1.08993 * 109.47212 * 180.02562 * 1 2 3 29 29 H 0.96995 * 119.99898 * 179.97438 * 7 6 4 30 30 H 0.96995 * 119.99605 * 0.02562 * 14 12 2 31 31 H 1.09000 * 109.47140 * 179.97438 * 17 15 14 32 32 H 1.09001 * 109.47230 * 299.99110 * 17 15 14 33 33 H 1.08992 * 109.47458 * 59.99987 * 20 18 17 34 34 H 1.09001 * 109.46885 * 180.02562 * 20 18 17 35 35 H 1.08999 * 109.47330 * 299.98997 * 20 18 17 36 36 H 1.09000 * 109.47054 * 60.00300 * 21 18 17 37 37 H 1.09001 * 109.46997 * 180.02562 * 21 18 17 38 38 H 1.09000 * 109.46866 * 299.99774 * 24 22 21 39 39 H 1.09001 * 109.47372 * 60.00182 * 24 22 21 40 40 H 1.09004 * 109.47107 * 179.97438 * 24 22 21 41 41 H 1.08993 * 109.47839 * 180.02562 * 25 22 21 42 42 H 1.09000 * 109.47160 * 59.99666 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9429 0.8297 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.8256 -2.5202 -4.0077 10 1 1.8259 -0.4206 -5.2204 11 1 3.8063 -1.1211 -4.0082 12 6 2.0323 -0.7105 1.2305 13 8 2.7295 -1.6966 1.1192 14 7 1.7068 -0.2500 2.4546 15 6 2.1955 -0.9403 3.6507 16 1 2.2326 -2.0132 3.4615 17 6 3.5980 -0.4344 3.9943 18 6 3.5461 1.0715 4.2600 19 1 3.1824 1.5850 3.3700 20 6 4.9486 1.5774 4.6029 21 6 2.6021 1.3504 5.4313 22 6 1.1997 0.8445 5.0877 23 1 0.8360 1.3581 4.1977 24 6 0.2556 1.1240 6.2589 25 6 1.2515 -0.6614 4.8221 26 1 -0.3632 0.5138 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 0.7089 1.1614 -3.4843 30 1 1.1489 0.5384 2.5436 31 1 3.9614 -0.9477 4.8845 32 1 4.2705 -0.6332 3.1598 33 1 5.6207 1.3788 3.7682 34 1 4.9116 2.6502 4.7926 35 1 5.3126 1.0640 5.4928 36 1 2.9658 0.8368 6.3212 37 1 2.5648 2.4233 5.6203 38 1 0.6191 0.6107 7.1491 39 1 0.2186 2.1969 6.4477 40 1 -0.7437 0.7640 6.0139 41 1 0.2526 -1.0218 4.5769 42 1 1.6152 -1.1750 5.7120 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597281876.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:01 Heat of formation + Delta-G solvation = -96.442927 kcal Electronic energy + Delta-G solvation = -19803.067718 eV Core-core repulsion = 16973.552673 eV Total energy + Delta-G solvation = -2829.515045 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.21421 -39.34015 -35.77001 -35.04393 -34.33261 -32.71339 -30.69109 -27.45066 -27.20415 -27.19072 -24.75481 -22.77562 -21.54159 -21.37504 -19.88014 -18.31941 -17.83178 -16.79568 -16.39261 -16.20255 -15.98443 -15.56365 -14.91115 -14.76116 -14.44697 -14.30258 -13.57122 -13.44221 -13.29363 -13.15598 -13.01123 -12.93492 -12.66974 -12.64043 -12.62393 -12.57277 -12.22011 -12.07158 -11.99202 -11.64545 -11.31131 -11.06291 -11.04635 -10.87120 -10.59289 -10.25846 -9.83489 -8.15009 -6.25404 1.40092 1.41836 1.50457 1.98841 2.37753 2.58970 3.14263 3.73254 3.80748 3.81520 4.13371 4.16083 4.33406 4.46472 4.51922 4.57026 4.71780 4.73704 4.77431 4.82961 4.88017 4.94050 4.95030 4.96454 5.01069 5.07759 5.09911 5.16316 5.29642 5.34555 5.44556 5.47362 5.50226 5.50600 5.62526 5.71476 5.80547 5.95378 6.22343 6.76683 6.89439 7.40583 7.60865 8.90683 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.029715 B = 0.005366 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.051266 B = 5216.417946 C = 5518.338277 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C 0.023 3.977 3 H 0.037 0.963 4 C -0.529 4.529 5 H 0.047 0.953 6 C 0.019 3.981 7 N -0.911 5.911 8 Si 0.955 3.045 9 H -0.276 1.276 10 H -0.273 1.273 11 H -0.277 1.277 12 C 0.521 3.479 13 O -0.590 6.590 14 N -0.716 5.716 15 C 0.139 3.861 16 H 0.057 0.943 17 C -0.118 4.118 18 C -0.091 4.091 19 H 0.050 0.950 20 C -0.143 4.143 21 C -0.099 4.099 22 C -0.094 4.094 23 H 0.060 0.940 24 C -0.140 4.140 25 C -0.110 4.110 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.022 0.978 29 H 0.265 0.735 30 H 0.405 0.595 31 H 0.086 0.914 32 H 0.029 0.971 33 H 0.037 0.963 34 H 0.064 0.936 35 H 0.066 0.934 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.060 0.940 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.355 3.569 19.127 19.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.002 3.998 3 H 0.055 0.945 4 C -0.567 4.567 5 H 0.065 0.935 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.781 3.219 9 H -0.202 1.202 10 H -0.198 1.198 11 H -0.203 1.203 12 C 0.310 3.690 13 O -0.470 6.470 14 N -0.370 5.370 15 C 0.035 3.965 16 H 0.075 0.925 17 C -0.157 4.157 18 C -0.110 4.110 19 H 0.068 0.932 20 C -0.200 4.200 21 C -0.136 4.136 22 C -0.113 4.113 23 H 0.078 0.922 24 C -0.198 4.198 25 C -0.147 4.147 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.241 0.759 31 H 0.104 0.896 32 H 0.048 0.952 33 H 0.056 0.944 34 H 0.083 0.917 35 H 0.085 0.915 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.083 0.917 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.086 0.914 42 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 0.052 2.985 18.929 19.163 hybrid contribution 0.231 -0.215 -1.355 1.392 sum 0.283 2.770 17.574 17.793 Atomic orbital electron populations 1.21540 0.95123 0.99327 1.01604 1.18793 0.95301 0.95734 0.89945 0.94542 1.21256 1.31580 1.12688 0.91211 0.93502 1.25603 0.95205 0.95767 1.01408 1.69943 1.37188 1.23582 1.24339 0.85655 0.78621 0.78750 0.78868 1.20173 1.19797 1.20266 1.21484 0.78168 0.83594 0.85759 1.90491 1.40094 1.28820 1.87580 1.46134 1.53852 1.32271 1.04719 1.20994 0.94449 0.96080 0.85007 0.92493 1.21906 0.95989 0.97021 1.00785 1.21075 0.96586 0.94598 0.98730 0.93179 1.21783 0.95542 1.01465 1.01224 1.21605 0.93334 1.01441 0.97226 1.21142 0.96197 0.94843 0.99112 0.92168 1.21767 0.98648 1.01980 0.97377 1.21828 0.98823 0.97337 0.96751 0.93139 0.91095 0.95912 0.92598 0.75860 0.89588 0.95228 0.94401 0.91715 0.91489 0.90583 0.91034 0.91746 0.92058 0.92606 0.91355 0.88830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.50 8.87 71.98 0.64 -4.87 16 2 C 0.02 1.22 2.64 -12.29 -0.03 1.18 16 3 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 4 C -0.53 -31.45 8.37 25.60 0.21 -31.24 16 5 H 0.05 2.98 6.75 -2.91 -0.02 2.96 16 6 C 0.02 1.10 5.30 84.65 0.45 1.55 16 7 N -0.91 -52.02 11.32 21.45 0.24 -51.78 16 8 Si 0.96 45.79 29.54 68.60 2.03 47.82 16 9 H -0.28 -13.15 7.11 99.48 0.71 -12.44 16 10 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 11 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 12 C 0.52 24.64 7.11 87.66 0.62 25.27 16 13 O -0.59 -32.44 15.12 -3.05 -0.05 -32.49 16 14 N -0.72 -25.04 4.13 -442.53 -1.83 -26.86 16 15 C 0.14 4.08 2.78 44.99 0.13 4.20 16 16 H 0.06 1.96 7.58 -2.39 -0.02 1.95 16 17 C -0.12 -3.25 4.88 30.59 0.15 -3.10 16 18 C -0.09 -2.12 2.56 -10.80 -0.03 -2.15 16 19 H 0.05 1.40 7.60 -2.39 -0.02 1.38 16 20 C -0.14 -2.95 9.19 71.98 0.66 -2.29 16 21 C -0.10 -1.70 4.49 30.59 0.14 -1.56 16 22 C -0.09 -1.66 2.55 -10.79 -0.03 -1.69 16 23 H 0.06 1.20 6.51 -2.39 -0.02 1.18 16 24 C -0.14 -1.91 9.19 71.98 0.66 -1.25 16 25 C -0.11 -2.22 4.89 30.60 0.15 -2.07 16 26 H 0.05 1.90 7.56 -2.39 -0.02 1.88 16 27 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 28 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.26 14.31 8.31 -92.71 -0.77 13.54 16 30 H 0.40 12.30 6.28 -92.71 -0.58 11.72 16 31 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 37 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 38 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 39 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.05 0.76 8.14 -2.38 -0.02 0.74 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -67.79 324.91 4.51 -63.27 By element: Atomic # 1 Polarization: 17.67 SS G_CDS: 0.39 Total: 18.06 kcal Atomic # 6 Polarization: -21.75 SS G_CDS: 3.72 Total: -18.02 kcal Atomic # 7 Polarization: -77.06 SS G_CDS: -1.58 Total: -78.64 kcal Atomic # 8 Polarization: -32.44 SS G_CDS: -0.05 Total: -32.49 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -67.79 4.51 -63.27 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597281876.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.169 kcal (2) G-P(sol) polarization free energy of solvation -67.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.274 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds