Wall clock time and date at job start Mon Mar 30 2020 07:26:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.47024 * 2 1 4 4 C 1.50701 * 109.46876 * 119.99953 * 2 1 3 5 5 H 1.07999 * 120.00099 * 119.99942 * 4 2 1 6 6 C 1.37881 * 119.99939 * 300.00080 * 4 2 1 7 7 N 1.31508 * 119.99922 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99822 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47066 * 359.97438 * 8 6 4 10 10 H 1.48497 * 109.47194 * 120.00033 * 8 6 4 11 11 H 1.48502 * 109.46850 * 239.99772 * 8 6 4 12 12 C 1.50696 * 109.47003 * 239.99704 * 2 1 3 13 13 O 1.21280 * 120.00232 * 239.99944 * 12 2 1 14 14 N 1.34776 * 120.00133 * 60.00531 * 12 2 1 15 15 C 1.46496 * 120.00390 * 179.97438 * 14 12 2 16 16 H 1.09004 * 109.47374 * 34.99626 * 15 14 12 17 17 C 1.53000 * 109.47631 * 154.99604 * 15 14 12 18 18 C 1.52997 * 109.47060 * 59.99933 * 17 15 14 19 19 H 1.09002 * 109.47153 * 300.00319 * 18 17 15 20 20 C 1.52992 * 109.47482 * 180.02562 * 18 17 15 21 21 C 1.52999 * 109.47317 * 59.99960 * 18 17 15 22 22 C 1.53005 * 109.47159 * 300.00546 * 21 18 17 23 23 H 1.09002 * 109.46935 * 299.99411 * 22 21 18 24 24 C 1.53002 * 109.46982 * 179.97438 * 22 21 18 25 25 C 1.52997 * 109.47452 * 59.99536 * 22 21 18 26 26 H 1.09007 * 109.47175 * 60.00262 * 1 2 3 27 27 H 1.09002 * 109.47024 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47129 * 300.00213 * 1 2 3 29 29 H 0.96998 * 120.00247 * 180.02562 * 7 6 4 30 30 H 0.97001 * 120.00215 * 359.97438 * 14 12 2 31 31 H 1.09002 * 109.47398 * 180.02562 * 17 15 14 32 32 H 1.09001 * 109.47194 * 300.00282 * 17 15 14 33 33 H 1.09001 * 109.47066 * 60.00169 * 20 18 17 34 34 H 1.08996 * 109.47747 * 179.97438 * 20 18 17 35 35 H 1.09002 * 109.47103 * 300.00247 * 20 18 17 36 36 H 1.09000 * 109.47486 * 180.02562 * 21 18 17 37 37 H 1.09002 * 109.46716 * 60.00091 * 21 18 17 38 38 H 1.09002 * 109.47067 * 299.99652 * 24 22 21 39 39 H 1.09000 * 109.47312 * 59.99678 * 24 22 21 40 40 H 1.09004 * 109.46930 * 179.97438 * 24 22 21 41 41 H 1.08993 * 109.47194 * 179.97438 * 25 22 21 42 42 H 1.09002 * 109.46695 * 59.99734 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6532 -1.5885 1.1315 6 6 1.6992 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3224 -1.1195 4.0080 9 1 3.1472 -2.2863 3.6038 10 1 3.1471 -0.1858 4.8161 11 1 1.1676 -1.5865 4.8165 12 6 2.0323 -0.7105 -1.2304 13 8 2.7296 -1.6965 -1.1191 14 7 1.7068 -0.2500 -2.4545 15 6 2.1955 -0.9403 -3.6507 16 1 2.2326 -2.0131 -3.4615 17 6 1.2516 -0.6614 -4.8221 18 6 1.1996 0.8444 -5.0878 19 1 0.8359 1.3580 -4.1978 20 6 0.2552 1.1234 -6.2587 21 6 2.6020 1.3505 -5.4313 22 6 3.5460 1.0715 -4.2599 23 1 3.1823 1.5851 -3.3699 24 6 4.9486 1.5770 -4.6037 25 6 3.5980 -0.4344 -3.9942 26 1 -0.3634 0.5138 -0.8901 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7094 1.1619 3.4843 30 1 1.1489 0.5385 -2.5436 31 1 1.6150 -1.1754 -5.7119 32 1 0.2525 -1.0219 -4.5773 33 1 -0.7438 0.7630 -6.0135 34 1 0.2178 2.1962 -6.4477 35 1 0.6185 0.6097 -7.1488 36 1 2.5651 2.4233 -5.6201 37 1 2.9657 0.8368 -6.3212 38 1 5.3120 1.0630 -5.4936 39 1 4.9119 2.6497 -4.7933 40 1 5.6210 1.3786 -3.7690 41 1 4.2709 -0.6331 -3.1601 42 1 3.9617 -0.9479 -4.8842 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597281878.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:26:06 Heat of formation + Delta-G solvation = -78.951210 kcal Electronic energy + Delta-G solvation = -19802.574147 eV Core-core repulsion = 16973.817599 eV Total energy + Delta-G solvation = -2828.756548 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 2.16 seconds Orbital eigenvalues (eV) -39.86355 -37.82650 -33.73634 -33.59116 -33.41558 -30.83579 -29.22071 -26.66097 -26.25100 -25.08788 -22.96894 -21.59692 -20.53539 -19.87912 -18.56875 -16.29592 -16.02354 -15.40601 -15.03695 -14.81889 -14.45883 -14.21896 -13.64406 -13.28705 -13.06920 -12.65098 -12.54921 -12.29417 -12.19156 -11.87186 -11.79914 -11.67056 -11.47044 -11.13282 -10.98742 -10.76964 -10.66071 -10.63371 -10.38397 -10.22945 -10.07323 -9.92400 -9.84027 -8.91203 -8.53728 -8.30064 -8.25461 -5.99187 -4.01715 3.34690 3.42080 3.50775 3.83568 4.03476 4.51522 4.65898 4.73269 4.76828 5.08158 5.16094 5.34157 5.36016 5.41531 5.50850 5.57542 5.64764 5.71283 5.77510 5.82959 5.89104 5.91071 5.95745 6.06913 6.11345 6.21553 6.27198 6.37280 6.49510 6.53709 6.55602 6.66931 6.87929 6.98696 7.26234 7.53411 7.80480 8.04793 8.22411 8.54879 9.08065 9.35762 9.63963 11.08553 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.029714 B = 0.005367 C = 0.005073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 942.097685 B = 5216.299037 C = 5518.317060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.028 3.972 3 H 0.050 0.950 4 C -0.497 4.497 5 H 0.074 0.926 6 C 0.057 3.943 7 N -0.898 5.898 8 Si 0.898 3.102 9 H -0.271 1.271 10 H -0.285 1.285 11 H -0.285 1.285 12 C 0.519 3.481 13 O -0.548 6.548 14 N -0.739 5.739 15 C 0.145 3.855 16 H 0.081 0.919 17 C -0.119 4.119 18 C -0.095 4.095 19 H 0.071 0.929 20 C -0.145 4.145 21 C -0.106 4.106 22 C -0.092 4.092 23 H 0.074 0.926 24 C -0.145 4.145 25 C -0.123 4.123 26 H 0.011 0.989 27 H 0.030 0.970 28 H 0.092 0.908 29 H 0.259 0.741 30 H 0.393 0.607 31 H 0.071 0.929 32 H 0.066 0.934 33 H 0.054 0.946 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.059 0.941 37 H 0.059 0.941 38 H 0.050 0.950 39 H 0.051 0.949 40 H 0.054 0.946 41 H 0.068 0.932 42 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.277 2.808 -17.162 17.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.007 3.993 3 H 0.068 0.932 4 C -0.536 4.536 5 H 0.092 0.908 6 C -0.143 4.143 7 N -0.537 5.537 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.211 1.211 11 H -0.211 1.211 12 C 0.309 3.691 13 O -0.424 6.424 14 N -0.393 5.393 15 C 0.039 3.961 16 H 0.099 0.901 17 C -0.157 4.157 18 C -0.113 4.113 19 H 0.089 0.911 20 C -0.203 4.203 21 C -0.143 4.143 22 C -0.111 4.111 23 H 0.092 0.908 24 C -0.202 4.202 25 C -0.162 4.162 26 H 0.030 0.970 27 H 0.049 0.951 28 H 0.111 0.889 29 H 0.069 0.931 30 H 0.228 0.772 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.073 0.927 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.073 0.927 41 H 0.087 0.913 42 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 0.717 2.179 -16.929 17.084 hybrid contribution 0.003 0.020 0.784 0.784 sum 0.720 2.198 -16.145 16.310 Atomic orbital electron populations 1.21733 0.96682 0.99720 1.00803 1.18868 0.94056 0.96780 0.89634 0.93202 1.21200 1.30656 1.12680 0.89027 0.90777 1.24953 0.95192 0.95095 0.99100 1.69881 1.37356 1.23179 1.23328 0.86421 0.78606 0.79796 0.82570 1.19584 1.21096 1.21099 1.21910 0.78395 0.84174 0.84605 1.90516 1.38102 1.27004 1.86824 1.46389 1.55060 1.32465 1.05416 1.20758 0.92650 0.97704 0.84973 0.90105 1.21862 0.99891 0.96017 0.97959 1.21136 0.95529 0.96091 0.98577 0.91091 1.21815 0.99192 1.01265 0.98003 1.21645 0.94260 1.00406 0.98010 1.21100 0.95095 0.96436 0.98464 0.90784 1.21807 0.96739 1.00440 1.01251 1.21957 0.97614 0.95218 1.01366 0.97026 0.95074 0.88941 0.93102 0.77232 0.91084 0.91488 0.92704 0.92818 0.92881 0.92260 0.92200 0.93088 0.93025 0.92665 0.91311 0.91958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.06 8.87 37.16 0.33 -2.73 16 2 C 0.03 0.70 2.64 -92.92 -0.25 0.45 16 3 H 0.05 1.30 8.14 -51.93 -0.42 0.88 16 4 C -0.50 -14.30 8.37 -34.44 -0.29 -14.59 16 5 H 0.07 2.26 6.75 -52.49 -0.35 1.91 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.50 16 7 N -0.90 -25.49 11.32 55.43 0.63 -24.86 16 8 Si 0.90 22.08 29.54 -169.99 -5.02 17.06 16 9 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 10 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 12 C 0.52 11.91 7.11 -10.99 -0.08 11.83 16 13 O -0.55 -14.41 15.12 5.56 0.08 -14.33 16 14 N -0.74 -12.86 4.12 -53.81 -0.22 -13.08 16 15 C 0.14 2.15 2.78 -67.93 -0.19 1.96 16 16 H 0.08 1.37 7.58 -51.93 -0.39 0.98 16 17 C -0.12 -1.36 4.89 -26.73 -0.13 -1.49 16 18 C -0.09 -0.98 2.55 -90.63 -0.23 -1.21 16 19 H 0.07 0.79 6.51 -51.93 -0.34 0.46 16 20 C -0.15 -1.27 9.19 37.15 0.34 -0.93 16 21 C -0.11 -1.08 4.49 -26.73 -0.12 -1.20 16 22 C -0.09 -1.13 2.56 -90.62 -0.23 -1.37 16 23 H 0.07 1.04 7.60 -51.93 -0.39 0.65 16 24 C -0.15 -1.61 9.19 37.16 0.34 -1.27 16 25 C -0.12 -1.71 4.88 -26.73 -0.13 -1.84 16 26 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 27 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.09 2.37 6.07 -51.93 -0.32 2.05 16 29 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 30 H 0.39 6.13 6.28 -40.82 -0.26 5.87 16 31 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 36 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 38 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 324.91 15.07 4.90 4.90 Total: -1.00 -30.55 324.91 -7.86 -38.41 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.50 Total: 2.77 kcal Atomic # 6 Polarization: -10.14 SS G_CDS: -0.73 Total: -10.86 kcal Atomic # 7 Polarization: -38.35 SS G_CDS: 0.41 Total: -37.94 kcal Atomic # 8 Polarization: -14.41 SS G_CDS: 0.08 Total: -14.33 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.55 -7.86 -38.41 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597281878.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.544 kcal (2) G-P(sol) polarization free energy of solvation -30.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.091 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.951 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.16 seconds