Wall clock time and date at job start Mon Mar 30 2020 07:01:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46781 * 2 1 4 4 C 1.50699 * 109.47675 * 119.99733 * 2 1 3 5 5 H 1.07999 * 120.00190 * 119.99669 * 4 2 1 6 6 C 1.37879 * 119.99619 * 300.00328 * 4 2 1 7 7 N 1.31509 * 120.00649 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99570 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47032 * 89.99708 * 8 6 4 10 10 H 1.48505 * 109.47078 * 210.00283 * 8 6 4 11 11 H 1.48502 * 109.46809 * 329.99707 * 8 6 4 12 12 C 1.50697 * 109.47103 * 240.00261 * 2 1 3 13 13 O 1.21281 * 120.00041 * 264.85550 * 12 2 1 14 14 N 1.34774 * 120.00289 * 84.85297 * 12 2 1 15 15 C 1.50166 * 120.53463 * 4.91011 * 14 12 2 16 16 C 1.46240 * 107.53419 * 109.60542 * 15 14 12 17 17 H 1.09004 * 108.52233 * 297.17230 * 16 15 14 18 18 C 1.52997 * 108.52480 * 179.49351 * 16 15 14 19 19 C 1.52527 * 114.27419 * 58.40774 * 16 15 14 20 20 C 1.50013 * 105.29669 * 270.63000 * 19 16 15 21 21 C 1.54841 * 110.88253 * 97.84933 * 20 19 16 22 22 C 1.43435 * 120.53574 * 184.92524 * 14 12 2 23 23 H 1.09005 * 108.16035 * 149.82774 * 22 14 12 24 24 C 1.53010 * 107.99776 * 33.14404 * 22 14 12 25 25 H 1.08989 * 109.47538 * 64.25363 * 1 2 3 26 26 H 1.08999 * 109.46672 * 184.25665 * 1 2 3 27 27 H 1.09008 * 109.47114 * 304.24969 * 1 2 3 28 28 H 0.97000 * 120.00475 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.84905 * 229.11167 * 15 14 12 30 30 H 1.09005 * 109.84576 * 350.10325 * 15 14 12 31 31 H 1.08992 * 109.47192 * 60.00468 * 18 16 15 32 32 H 1.09000 * 109.46685 * 180.02562 * 18 16 15 33 33 H 1.08992 * 109.47233 * 300.00083 * 18 16 15 34 34 H 1.09004 * 110.25073 * 29.56414 * 19 16 15 35 35 H 1.09003 * 110.25217 * 151.61965 * 19 16 15 36 36 H 1.09006 * 109.28104 * 337.41683 * 20 19 16 37 37 H 1.08999 * 109.07240 * 218.14617 * 20 19 16 38 38 H 1.09007 * 109.36169 * 200.80146 * 21 20 19 39 39 H 1.08992 * 109.35949 * 81.07340 * 21 20 19 40 40 H 1.08995 * 109.46862 * 282.88850 * 24 22 14 41 41 H 1.09000 * 109.46918 * 42.88860 * 24 22 14 42 42 H 1.08995 * 109.46864 * 162.88053 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7103 1.2304 5 1 2.6534 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3216 -1.1201 4.0080 9 1 3.6299 -0.5457 4.4122 10 1 1.3434 -0.9492 5.1121 11 1 2.4861 -2.5660 3.7119 12 6 2.0323 -0.7103 -1.2305 13 8 2.3232 -1.8864 -1.1754 14 7 2.1582 -0.0387 -2.3921 15 6 1.9070 1.4407 -2.4492 16 6 3.1964 2.0989 -2.6562 17 1 3.8339 1.8894 -1.7972 18 6 2.9646 3.6094 -2.7306 19 6 3.9280 1.6611 -3.9209 20 6 4.7628 0.4850 -3.5081 21 6 4.0549 -0.8458 -3.8625 22 6 2.5341 -0.7256 -3.5940 23 1 2.0800 -0.2064 -4.4381 24 6 1.9472 -2.1374 -3.5349 25 1 -0.3634 0.4463 -0.9255 26 1 -0.3632 -1.0248 0.0763 27 1 -0.3634 0.5784 0.8495 28 1 0.7096 1.1619 3.4844 29 1 1.2370 1.6706 -3.2777 30 1 1.4659 1.7776 -1.5110 31 1 2.5164 3.9545 -1.7990 32 1 3.9174 4.1158 -2.8854 33 1 2.2952 3.8338 -3.5609 34 1 3.2121 1.3656 -4.6878 35 1 4.5640 2.4671 -4.2870 36 1 4.9338 0.5248 -2.4323 37 1 5.7215 0.5298 -4.0248 38 1 4.4673 -1.6485 -3.2511 39 1 4.2190 -1.0730 -4.9157 40 1 2.5499 -2.7537 -2.8680 41 1 0.9244 -2.0903 -3.1610 42 1 1.9490 -2.5736 -4.5338 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597292539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:55 Heat of formation + Delta-G solvation = -43.151742 kcal Electronic energy + Delta-G solvation = -20580.207410 eV Core-core repulsion = 17753.003244 eV Total energy + Delta-G solvation = -2827.204166 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.13627 -37.37980 -34.62744 -33.52837 -33.05124 -30.54708 -29.25703 -26.06614 -25.75838 -25.13935 -23.55068 -22.03805 -20.55599 -19.83060 -17.72211 -16.41961 -16.02661 -15.41321 -14.99015 -14.69371 -14.42677 -13.97350 -13.65962 -13.24997 -12.92202 -12.48902 -12.40390 -12.09758 -11.99255 -11.97621 -11.51104 -11.44051 -11.08667 -11.02375 -10.88945 -10.63405 -10.58397 -10.52787 -10.29473 -10.25498 -10.11094 -10.03955 -9.90867 -8.92501 -8.41889 -8.03906 -7.95591 -6.01374 -4.03618 3.33917 3.39827 3.46620 3.66872 3.81908 4.47701 4.81423 4.98874 5.04526 5.23000 5.28333 5.32098 5.40903 5.54963 5.70018 5.75145 5.80167 5.84015 5.90879 5.99679 6.08802 6.11077 6.17908 6.21584 6.34319 6.38522 6.45988 6.49441 6.58123 6.59206 6.69530 6.83573 6.90061 7.03713 7.38617 7.53564 7.79294 8.02451 8.16340 8.44239 9.02220 9.36816 9.61228 11.06357 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.022706 B = 0.007410 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.842461 B = 3777.989757 C = 4223.668106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.030 3.970 3 H 0.046 0.954 4 C -0.497 4.497 5 H 0.068 0.932 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.897 3.103 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.525 3.475 13 O -0.541 6.541 14 N -0.619 5.619 15 C 0.119 3.881 16 C -0.115 4.115 17 H 0.077 0.923 18 C -0.148 4.148 19 C -0.110 4.110 20 C -0.119 4.119 21 C -0.128 4.128 22 C 0.148 3.852 23 H 0.061 0.939 24 C -0.159 4.159 25 H 0.011 0.989 26 H 0.033 0.967 27 H 0.090 0.910 28 H 0.260 0.740 29 H 0.063 0.937 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.052 0.948 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.051 0.949 38 H 0.065 0.935 39 H 0.062 0.938 40 H 0.090 0.910 41 H 0.051 0.949 42 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.025 4.376 -13.211 14.242 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.009 3.991 3 H 0.064 0.936 4 C -0.536 4.536 5 H 0.087 0.913 6 C -0.141 4.141 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.317 3.683 13 O -0.417 6.417 14 N -0.354 5.354 15 C -0.003 4.003 16 C -0.134 4.134 17 H 0.095 0.905 18 C -0.206 4.206 19 C -0.147 4.147 20 C -0.157 4.157 21 C -0.167 4.167 22 C 0.043 3.957 23 H 0.079 0.921 24 C -0.217 4.217 25 H 0.030 0.970 26 H 0.052 0.948 27 H 0.109 0.891 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.119 0.881 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.084 0.916 35 H 0.082 0.918 36 H 0.084 0.916 37 H 0.069 0.931 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.108 0.892 41 H 0.070 0.930 42 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 3.081 3.817 -13.012 13.906 hybrid contribution 0.332 -0.293 0.773 0.891 sum 3.413 3.524 -12.240 13.186 Atomic orbital electron populations 1.21681 0.96361 1.00643 0.99913 1.18883 0.94123 0.96569 0.89500 0.93623 1.21087 1.30964 1.12385 0.89143 0.91346 1.24922 0.95130 0.95070 0.98995 1.69869 1.37116 1.23096 1.23457 0.86500 0.78416 0.80337 0.82264 1.20745 1.21260 1.19764 1.21863 0.75108 0.87270 0.84049 1.90472 1.49817 1.17155 1.84258 1.48407 1.70016 1.08327 1.08636 1.21127 0.96157 0.79529 1.03498 1.20552 0.98469 0.95486 0.98942 0.90476 1.21935 1.01466 0.95299 1.01933 1.21101 0.98848 0.97638 0.97136 1.21519 0.97925 0.94498 1.01732 1.22662 0.95746 0.97729 1.00563 1.20466 0.93927 0.93728 0.87591 0.92089 1.22390 1.02037 0.96834 1.00419 0.97031 0.94759 0.89145 0.93009 0.91860 0.88107 0.92293 0.92789 0.92894 0.91574 0.91845 0.91629 0.93070 0.91627 0.91886 0.89180 0.93011 0.94308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 8.74 37.16 0.32 -2.72 16 2 C 0.03 0.75 1.81 -92.93 -0.17 0.59 16 3 H 0.05 1.15 6.33 -51.93 -0.33 0.82 16 4 C -0.50 -14.12 8.33 -34.44 -0.29 -14.41 16 5 H 0.07 2.05 7.03 -52.49 -0.37 1.69 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.56 16 7 N -0.90 -25.09 11.37 55.43 0.63 -24.46 16 8 Si 0.90 21.90 29.54 -169.99 -5.02 16.88 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 12 C 0.53 12.04 6.24 -10.99 -0.07 11.97 16 13 O -0.54 -13.82 12.57 5.56 0.07 -13.75 16 14 N -0.62 -11.22 2.49 -167.82 -0.42 -11.63 16 15 C 0.12 1.81 4.94 -5.20 -0.03 1.78 16 16 C -0.12 -1.55 2.22 -94.08 -0.21 -1.76 16 17 H 0.08 1.23 6.92 -51.93 -0.36 0.87 16 18 C -0.15 -1.67 8.91 37.16 0.33 -1.33 16 19 C -0.11 -1.31 5.19 -28.46 -0.15 -1.46 16 20 C -0.12 -1.60 5.63 -27.24 -0.15 -1.75 16 21 C -0.13 -1.83 5.73 -24.76 -0.14 -1.97 16 22 C 0.15 2.35 2.17 -68.55 -0.15 2.20 16 23 H 0.06 0.85 6.89 -51.93 -0.36 0.49 16 24 C -0.16 -2.71 7.76 37.16 0.29 -2.42 16 25 H 0.01 0.22 7.97 -51.94 -0.41 -0.19 16 26 H 0.03 0.84 8.14 -51.93 -0.42 0.41 16 27 H 0.09 2.31 6.20 -51.92 -0.32 1.99 16 28 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 29 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 30 H 0.10 1.70 5.38 -51.93 -0.28 1.43 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.55 7.97 -51.93 -0.41 0.14 16 33 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.76 6.29 -51.93 -0.33 0.43 16 35 H 0.06 0.66 7.72 -51.93 -0.40 0.26 16 36 H 0.07 1.04 6.82 -51.93 -0.35 0.68 16 37 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.06 1.06 7.81 -51.92 -0.41 0.66 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.09 1.78 5.85 -51.93 -0.30 1.47 16 41 H 0.05 0.96 7.75 -51.93 -0.40 0.56 16 42 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 312.48 15.07 4.71 4.71 Total: -1.00 -29.76 312.48 -7.66 -37.42 By element: Atomic # 1 Polarization: 7.69 SS G_CDS: -7.13 Total: 0.56 kcal Atomic # 6 Polarization: -9.23 SS G_CDS: -0.50 Total: -9.73 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.21 Total: -36.09 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: 0.07 Total: -13.75 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.88 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -29.76 -7.66 -37.42 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597292539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.728 kcal (2) G-P(sol) polarization free energy of solvation -29.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.491 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds