Wall clock time and date at job start Mon Mar 30 2020 07:01:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09005 * 109.46781 * 2 1 4 4 C 1.50699 * 109.47675 * 119.99733 * 2 1 3 5 5 H 1.07999 * 120.00190 * 119.99669 * 4 2 1 6 6 C 1.37879 * 119.99619 * 300.00328 * 4 2 1 7 7 N 1.31509 * 120.00649 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 119.99570 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47032 * 89.99708 * 8 6 4 10 10 H 1.48505 * 109.47078 * 210.00283 * 8 6 4 11 11 H 1.48502 * 109.46809 * 329.99707 * 8 6 4 12 12 C 1.50697 * 109.47103 * 240.00261 * 2 1 3 13 13 O 1.21281 * 120.00041 * 264.85550 * 12 2 1 14 14 N 1.34774 * 120.00289 * 84.85297 * 12 2 1 15 15 C 1.50166 * 120.53463 * 4.91011 * 14 12 2 16 16 C 1.46240 * 107.53419 * 109.60542 * 15 14 12 17 17 H 1.09004 * 108.52233 * 297.17230 * 16 15 14 18 18 C 1.52997 * 108.52480 * 179.49351 * 16 15 14 19 19 C 1.52527 * 114.27419 * 58.40774 * 16 15 14 20 20 C 1.50013 * 105.29669 * 270.63000 * 19 16 15 21 21 C 1.54841 * 110.88253 * 97.84933 * 20 19 16 22 22 C 1.43435 * 120.53574 * 184.92524 * 14 12 2 23 23 H 1.09005 * 108.16035 * 149.82774 * 22 14 12 24 24 C 1.53010 * 107.99776 * 33.14404 * 22 14 12 25 25 H 1.08989 * 109.47538 * 64.25363 * 1 2 3 26 26 H 1.08999 * 109.46672 * 184.25665 * 1 2 3 27 27 H 1.09008 * 109.47114 * 304.24969 * 1 2 3 28 28 H 0.97000 * 120.00475 * 180.02562 * 7 6 4 29 29 H 1.08996 * 109.84905 * 229.11167 * 15 14 12 30 30 H 1.09005 * 109.84576 * 350.10325 * 15 14 12 31 31 H 1.08992 * 109.47192 * 60.00468 * 18 16 15 32 32 H 1.09000 * 109.46685 * 180.02562 * 18 16 15 33 33 H 1.08992 * 109.47233 * 300.00083 * 18 16 15 34 34 H 1.09004 * 110.25073 * 29.56414 * 19 16 15 35 35 H 1.09003 * 110.25217 * 151.61965 * 19 16 15 36 36 H 1.09006 * 109.28104 * 337.41683 * 20 19 16 37 37 H 1.08999 * 109.07240 * 218.14617 * 20 19 16 38 38 H 1.09007 * 109.36169 * 200.80146 * 21 20 19 39 39 H 1.08992 * 109.35949 * 81.07340 * 21 20 19 40 40 H 1.08995 * 109.46862 * 282.88850 * 24 22 14 41 41 H 1.09000 * 109.46918 * 42.88860 * 24 22 14 42 42 H 1.08995 * 109.46864 * 162.88053 * 24 22 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0325 -0.7103 1.2304 5 1 2.6534 -1.5884 1.1314 6 6 1.6993 -0.2392 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3216 -1.1201 4.0080 9 1 3.6299 -0.5457 4.4122 10 1 1.3434 -0.9492 5.1121 11 1 2.4861 -2.5660 3.7119 12 6 2.0323 -0.7103 -1.2305 13 8 2.3232 -1.8864 -1.1754 14 7 2.1582 -0.0387 -2.3921 15 6 1.9070 1.4407 -2.4492 16 6 3.1964 2.0989 -2.6562 17 1 3.8339 1.8894 -1.7972 18 6 2.9646 3.6094 -2.7306 19 6 3.9280 1.6611 -3.9209 20 6 4.7628 0.4850 -3.5081 21 6 4.0549 -0.8458 -3.8625 22 6 2.5341 -0.7256 -3.5940 23 1 2.0800 -0.2064 -4.4381 24 6 1.9472 -2.1374 -3.5349 25 1 -0.3634 0.4463 -0.9255 26 1 -0.3632 -1.0248 0.0763 27 1 -0.3634 0.5784 0.8495 28 1 0.7096 1.1619 3.4844 29 1 1.2370 1.6706 -3.2777 30 1 1.4659 1.7776 -1.5110 31 1 2.5164 3.9545 -1.7990 32 1 3.9174 4.1158 -2.8854 33 1 2.2952 3.8338 -3.5609 34 1 3.2121 1.3656 -4.6878 35 1 4.5640 2.4671 -4.2870 36 1 4.9338 0.5248 -2.4323 37 1 5.7215 0.5298 -4.0248 38 1 4.4673 -1.6485 -3.2511 39 1 4.2190 -1.0730 -4.9157 40 1 2.5499 -2.7537 -2.8680 41 1 0.9244 -2.0903 -3.1610 42 1 1.9490 -2.5736 -4.5338 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597292539.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:54 Heat of formation + Delta-G solvation = -59.802947 kcal Electronic energy + Delta-G solvation = -20580.929461 eV Core-core repulsion = 17753.003244 eV Total energy + Delta-G solvation = -2827.926217 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.59190 -38.85935 -36.21126 -35.21584 -34.50055 -32.40574 -30.63219 -27.28222 -27.21743 -26.93360 -25.12791 -23.53111 -21.88552 -21.03829 -19.35293 -18.39290 -17.61492 -17.00170 -16.47674 -16.23579 -15.75356 -15.34703 -15.05141 -14.83197 -14.67436 -13.94926 -13.68037 -13.41659 -13.36885 -13.17525 -13.10258 -12.91816 -12.69295 -12.66818 -12.60820 -12.35788 -12.16666 -12.15521 -11.88717 -11.68621 -11.39968 -11.28551 -11.14428 -10.98415 -10.53634 -9.82762 -9.43133 -8.16374 -6.25836 1.37167 1.38315 1.50030 1.99511 2.25381 2.44661 3.13068 3.72520 3.75378 3.98059 4.09108 4.16851 4.27014 4.30442 4.48141 4.60367 4.66568 4.70781 4.76991 4.79201 4.85499 4.90646 4.91263 4.99495 5.01970 5.04766 5.08641 5.23392 5.26886 5.35356 5.44521 5.45700 5.46946 5.50300 5.56901 5.72057 5.87450 6.06514 6.22645 6.65207 6.80831 7.39884 7.64982 8.89689 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.022706 B = 0.007410 C = 0.006628 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1232.842461 B = 3777.989757 C = 4223.668106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.028 3.972 3 H 0.039 0.961 4 C -0.526 4.526 5 H 0.040 0.960 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.952 3.048 9 H -0.273 1.273 10 H -0.273 1.273 11 H -0.281 1.281 12 C 0.522 3.478 13 O -0.579 6.579 14 N -0.610 5.610 15 C 0.115 3.885 16 C -0.114 4.114 17 H 0.041 0.959 18 C -0.142 4.142 19 C -0.100 4.100 20 C -0.118 4.118 21 C -0.124 4.124 22 C 0.139 3.861 23 H 0.099 0.901 24 C -0.153 4.153 25 H 0.043 0.957 26 H 0.016 0.984 27 H 0.072 0.928 28 H 0.265 0.735 29 H 0.099 0.901 30 H 0.078 0.922 31 H 0.045 0.955 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.029 0.971 37 H 0.072 0.928 38 H 0.034 0.966 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.029 0.971 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.166 5.841 -15.562 16.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.007 3.993 3 H 0.057 0.943 4 C -0.564 4.564 5 H 0.059 0.941 6 C -0.177 4.177 7 N -0.548 5.548 8 Si 0.777 3.223 9 H -0.198 1.198 10 H -0.198 1.198 11 H -0.207 1.207 12 C 0.313 3.687 13 O -0.459 6.459 14 N -0.343 5.343 15 C -0.006 4.006 16 C -0.133 4.133 17 H 0.060 0.940 18 C -0.200 4.200 19 C -0.138 4.138 20 C -0.155 4.155 21 C -0.163 4.163 22 C 0.035 3.965 23 H 0.117 0.883 24 C -0.211 4.211 25 H 0.062 0.938 26 H 0.035 0.965 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.117 0.883 30 H 0.097 0.903 31 H 0.064 0.936 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.102 0.898 35 H 0.105 0.895 36 H 0.047 0.953 37 H 0.091 0.909 38 H 0.053 0.947 39 H 0.117 0.883 40 H 0.073 0.927 41 H 0.048 0.952 42 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 3.221 5.330 -15.393 16.605 hybrid contribution 0.296 -0.731 1.467 1.665 sum 3.517 4.598 -13.927 15.082 Atomic orbital electron populations 1.21479 0.95617 0.99333 1.00709 1.18786 0.94727 0.95922 0.89847 0.94275 1.21217 1.31653 1.12221 0.91346 0.94145 1.25553 0.95204 0.95751 1.01242 1.69939 1.37100 1.23488 1.24269 0.85657 0.78533 0.78711 0.79371 1.19808 1.19790 1.20675 1.21446 0.75415 0.86774 0.85073 1.90469 1.51701 1.18571 1.85133 1.48353 1.68386 1.09633 1.07945 1.21364 0.97914 0.77467 1.03807 1.20478 0.96905 0.97143 0.98781 0.94032 1.21880 1.02647 0.93202 1.02242 1.21096 0.98955 0.97410 0.96300 1.21501 0.99425 0.94866 0.99735 1.22650 0.94269 0.97302 1.02049 1.20790 0.95373 0.93098 0.87232 0.88283 1.22265 0.99935 0.97514 1.01364 0.93838 0.96516 0.90972 0.92571 0.88276 0.90326 0.93585 0.91523 0.90582 0.89800 0.89486 0.95257 0.90937 0.94714 0.88342 0.92704 0.95209 0.90821 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.51 8.74 71.98 0.63 -4.88 16 2 C 0.03 1.47 1.81 -12.29 -0.02 1.44 16 3 H 0.04 2.06 6.33 -2.38 -0.02 2.04 16 4 C -0.53 -31.22 8.33 25.60 0.21 -31.01 16 5 H 0.04 2.57 7.03 -2.91 -0.02 2.55 16 6 C 0.02 1.24 5.30 84.66 0.45 1.69 16 7 N -0.91 -51.59 11.37 21.45 0.24 -51.35 16 8 Si 0.95 45.75 29.54 68.60 2.03 47.77 16 9 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 10 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 11 H -0.28 -13.83 7.11 99.48 0.71 -13.13 16 12 C 0.52 24.78 6.24 87.66 0.55 25.33 16 13 O -0.58 -31.23 12.57 -3.03 -0.04 -31.27 16 14 N -0.61 -21.82 2.49 -803.26 -2.00 -23.83 16 15 C 0.11 3.30 4.94 83.58 0.41 3.72 16 16 C -0.11 -2.86 2.22 -13.03 -0.03 -2.89 16 17 H 0.04 1.34 6.92 -2.39 -0.02 1.33 16 18 C -0.14 -2.79 8.91 71.98 0.64 -2.15 16 19 C -0.10 -2.01 5.19 29.48 0.15 -1.86 16 20 C -0.12 -2.93 5.63 30.26 0.17 -2.76 16 21 C -0.12 -3.30 5.73 31.87 0.18 -3.12 16 22 C 0.14 4.13 2.17 46.21 0.10 4.23 16 23 H 0.10 2.26 6.89 -2.38 -0.02 2.24 16 24 C -0.15 -5.12 7.76 71.99 0.56 -4.56 16 25 H 0.04 1.77 7.97 -2.39 -0.02 1.75 16 26 H 0.02 0.81 8.14 -2.39 -0.02 0.79 16 27 H 0.07 3.76 6.20 -2.38 -0.01 3.75 16 28 H 0.27 14.21 8.31 -92.71 -0.77 13.44 16 29 H 0.10 2.19 8.12 -2.39 -0.02 2.17 16 30 H 0.08 2.63 5.38 -2.38 -0.01 2.62 16 31 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.16 7.97 -2.39 -0.02 1.14 16 33 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 34 H 0.08 1.44 6.29 -2.39 -0.01 1.42 16 35 H 0.09 1.39 7.72 -2.39 -0.02 1.37 16 36 H 0.03 0.93 6.82 -2.38 -0.02 0.92 16 37 H 0.07 1.49 8.14 -2.39 -0.02 1.48 16 38 H 0.03 1.13 7.81 -2.38 -0.02 1.11 16 39 H 0.10 1.95 8.14 -2.39 -0.02 1.93 16 40 H 0.05 2.23 5.85 -2.39 -0.01 2.22 16 41 H 0.03 1.09 7.75 -2.39 -0.02 1.07 16 42 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -68.14 312.48 5.22 -62.93 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: 0.98 Total: 12.55 kcal Atomic # 6 Polarization: -20.81 SS G_CDS: 4.01 Total: -16.81 kcal Atomic # 7 Polarization: -73.42 SS G_CDS: -1.76 Total: -75.17 kcal Atomic # 8 Polarization: -31.23 SS G_CDS: -0.04 Total: -31.27 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.77 kcal Total: -68.14 5.22 -62.93 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597292539.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.123 kcal (2) G-P(sol) polarization free energy of solvation -68.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds