Wall clock time and date at job start Mon Mar 30 2020 07:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47180 * 2 1 4 4 C 1.50698 * 109.47200 * 240.00346 * 2 1 3 5 5 H 1.08004 * 119.99895 * 239.99514 * 4 2 1 6 6 C 1.37878 * 120.00183 * 59.99702 * 4 2 1 7 7 N 1.31515 * 119.99633 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99939 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47241 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46966 * 120.00018 * 8 6 4 11 11 H 1.48504 * 109.47107 * 239.99988 * 8 6 4 12 12 C 1.50699 * 109.47469 * 120.00049 * 2 1 3 13 13 O 1.21279 * 119.99929 * 95.25294 * 12 2 1 14 14 N 1.34788 * 119.99914 * 275.25608 * 12 2 1 15 15 C 1.46923 * 120.62800 * 355.30361 * 14 12 2 16 16 C 1.53189 * 108.77318 * 126.37334 * 15 14 12 17 17 H 1.09008 * 109.49850 * 294.67842 * 16 15 14 18 18 C 1.52997 * 109.49917 * 174.61694 * 16 15 14 19 19 C 1.53035 * 109.31780 * 54.62970 * 16 15 14 20 20 C 1.53041 * 109.53994 * 298.64038 * 19 16 15 21 21 C 1.53007 * 109.49550 * 301.40909 * 20 19 16 22 22 C 1.53001 * 109.50161 * 181.31427 * 20 19 16 23 23 C 1.46918 * 120.62837 * 175.28107 * 14 12 2 24 24 H 1.09005 * 109.47142 * 184.89508 * 1 2 3 25 25 H 1.08999 * 109.47411 * 304.88938 * 1 2 3 26 26 H 1.08998 * 109.47386 * 64.88908 * 1 2 3 27 27 H 0.97002 * 119.99692 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.58609 * 246.15456 * 15 14 12 29 29 H 1.08997 * 109.59069 * 6.44016 * 15 14 12 30 30 H 1.09008 * 109.46901 * 59.99759 * 18 16 15 31 31 H 1.08999 * 109.47282 * 179.97438 * 18 16 15 32 32 H 1.09002 * 109.47403 * 299.99665 * 18 16 15 33 33 H 1.08996 * 109.46414 * 178.61576 * 19 16 15 34 34 H 1.09005 * 109.45947 * 58.65758 * 19 16 15 35 35 H 1.08997 * 109.47232 * 179.83568 * 21 20 19 36 36 H 1.09001 * 109.47111 * 299.83926 * 21 20 19 37 37 H 1.09001 * 109.47046 * 59.83533 * 21 20 19 38 38 H 1.09004 * 109.46991 * 300.16221 * 22 20 19 39 39 H 1.09000 * 109.46850 * 60.15772 * 22 20 19 40 40 H 1.09000 * 109.47068 * 180.15835 * 22 20 19 41 41 H 1.09002 * 109.58632 * 113.84519 * 23 14 12 42 42 H 1.09000 * 109.70471 * 353.49113 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6033 8 14 2.3213 -1.1202 -4.0080 9 1 3.1465 -2.2868 -3.6038 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1872 -4.8165 12 6 2.0323 -0.7104 1.2304 13 8 2.3252 -1.8860 1.1748 14 7 2.1562 -0.0392 2.3927 15 6 1.9040 1.4069 2.4526 16 6 0.8742 1.6826 3.5527 17 1 -0.0805 1.2338 3.2782 18 6 0.6986 3.1932 3.7209 19 6 1.3645 1.0751 4.8689 20 6 1.5086 -0.4403 4.7109 21 6 0.1602 -1.0424 4.3103 22 6 1.9674 -1.0507 6.0367 23 6 2.5455 -0.7401 3.6239 24 1 -0.3634 -1.0240 0.0877 25 1 -0.3634 0.5878 0.8429 26 1 -0.3634 0.4361 -0.9305 27 1 0.7088 1.1615 -3.4843 28 1 2.8321 1.9306 2.6815 29 1 1.5176 1.7505 1.4931 30 1 0.3517 3.6253 2.7821 31 1 -0.0346 3.3889 4.5034 32 1 1.6531 3.6415 3.9965 33 1 0.6453 1.2911 5.6588 34 1 2.3309 1.5064 5.1302 35 1 0.2639 -2.1213 4.1950 36 1 -0.5773 -0.8288 5.0839 37 1 -0.1665 -0.6059 3.3664 38 1 2.9272 -0.6202 6.3221 39 1 1.2292 -0.8372 6.8098 40 1 2.0725 -2.1297 5.9229 41 1 3.5260 -0.3915 3.9483 42 1 2.5820 -1.8138 3.4398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597496809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:14 Heat of formation + Delta-G solvation = -61.139636 kcal Electronic energy + Delta-G solvation = -20337.503392 eV Core-core repulsion = 17509.519212 eV Total energy + Delta-G solvation = -2827.984180 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.03707 -37.58286 -34.39137 -33.58420 -33.00760 -30.39746 -27.23579 -26.64469 -26.59013 -25.18828 -25.12188 -22.00574 -20.61342 -18.87048 -18.01268 -16.47486 -15.90803 -15.29120 -15.07937 -14.56324 -14.41594 -14.12947 -13.64569 -13.25265 -12.87792 -12.70616 -12.56385 -12.24671 -12.11964 -11.76960 -11.72382 -11.43035 -11.36555 -11.25985 -10.97731 -10.75553 -10.63604 -10.60693 -10.53610 -10.26204 -10.19495 -10.06675 -9.96195 -8.93615 -8.54656 -8.23859 -7.94062 -6.01937 -4.05043 3.32912 3.40407 3.48405 3.71927 3.78268 4.48104 4.68903 4.85529 4.89472 5.04394 5.30442 5.31623 5.44304 5.52646 5.63808 5.66793 5.73221 5.74520 5.78315 5.89043 5.94983 5.97843 6.05966 6.15808 6.16620 6.20348 6.26176 6.31138 6.38651 6.50768 6.62489 6.68700 6.89602 7.01658 7.19904 7.47074 7.79481 8.01623 8.16436 8.43587 9.01581 9.28764 9.59935 11.05227 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.030549 B = 0.006323 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.326045 B = 4427.445166 C = 4933.706400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.030 3.970 3 H 0.047 0.953 4 C -0.497 4.497 5 H 0.069 0.931 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.524 3.476 13 O -0.549 6.549 14 N -0.624 5.624 15 C 0.113 3.887 16 C -0.111 4.111 17 H 0.079 0.921 18 C -0.144 4.144 19 C -0.099 4.099 20 C -0.081 4.081 21 C -0.138 4.138 22 C -0.137 4.137 23 C 0.121 3.879 24 H 0.029 0.971 25 H 0.013 0.987 26 H 0.095 0.905 27 H 0.260 0.740 28 H 0.057 0.943 29 H 0.098 0.902 30 H 0.059 0.941 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.049 0.951 37 H 0.063 0.937 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.054 0.946 42 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.904 3.901 15.309 15.824 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.009 3.991 3 H 0.065 0.935 4 C -0.536 4.536 5 H 0.087 0.913 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.316 3.684 13 O -0.425 6.425 14 N -0.359 5.359 15 C -0.011 4.011 16 C -0.130 4.130 17 H 0.097 0.903 18 C -0.202 4.202 19 C -0.137 4.137 20 C -0.081 4.081 21 C -0.195 4.195 22 C -0.195 4.195 23 C -0.002 4.002 24 H 0.048 0.952 25 H 0.032 0.968 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.078 0.922 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.075 0.925 41 H 0.072 0.928 42 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.807 3.350 15.102 15.490 hybrid contribution 0.278 -0.306 -0.732 0.841 sum -0.529 3.044 14.369 14.698 Atomic orbital electron populations 1.21693 0.96230 0.99109 1.01703 1.18888 0.94232 0.96611 0.89326 0.93492 1.21148 1.30872 1.12424 0.89148 0.91261 1.24934 0.95151 0.95072 0.99050 1.69872 1.37151 1.23099 1.23407 0.86419 0.78658 0.79778 0.82543 1.19610 1.20988 1.21057 1.21981 0.74948 0.87285 0.84181 1.90514 1.49877 1.17349 1.84773 1.48286 1.70634 1.08448 1.08484 1.21784 0.97733 0.81226 1.00316 1.21590 1.00058 0.95880 0.95494 0.90286 1.21757 1.01454 0.95073 1.01874 1.21612 1.00989 0.94111 0.96951 1.20921 0.96477 0.95571 0.95176 1.21851 0.95569 1.00625 1.01505 1.21791 1.00873 1.00767 0.96067 1.21464 0.95599 0.98929 0.84197 0.95166 0.96827 0.88657 0.93012 0.92475 0.88351 0.92163 0.92798 0.92771 0.92173 0.92119 0.92905 0.93226 0.91796 0.92741 0.92659 0.92541 0.92786 0.89575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.92 37.15 0.33 -2.75 16 2 C 0.03 0.77 1.80 -92.93 -0.17 0.60 16 3 H 0.05 1.20 6.28 -51.93 -0.33 0.87 16 4 C -0.50 -14.29 8.33 -34.44 -0.29 -14.57 16 5 H 0.07 2.11 7.02 -52.48 -0.37 1.74 16 6 C 0.06 1.63 5.29 -17.82 -0.09 1.54 16 7 N -0.90 -25.15 11.29 55.43 0.63 -24.53 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 12 C 0.52 12.36 6.80 -10.98 -0.07 12.29 16 13 O -0.55 -14.73 15.24 5.56 0.08 -14.65 16 14 N -0.62 -11.56 2.41 -172.78 -0.42 -11.98 16 15 C 0.11 1.76 5.55 -3.71 -0.02 1.74 16 16 C -0.11 -1.41 2.53 -90.51 -0.23 -1.64 16 17 H 0.08 1.11 6.33 -51.92 -0.33 0.78 16 18 C -0.14 -1.52 9.20 37.16 0.34 -1.18 16 19 C -0.10 -1.13 4.00 -26.69 -0.11 -1.24 16 20 C -0.08 -1.02 0.77 -154.39 -0.12 -1.14 16 21 C -0.14 -1.90 7.99 37.16 0.30 -1.60 16 22 C -0.14 -1.43 8.48 37.16 0.32 -1.11 16 23 C 0.12 1.93 5.09 -3.72 -0.02 1.91 16 24 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 25 H 0.01 0.27 7.86 -51.93 -0.41 -0.14 16 26 H 0.09 2.47 5.96 -51.93 -0.31 2.16 16 27 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 28 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.10 1.71 5.15 -51.93 -0.27 1.44 16 30 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 37 H 0.06 1.01 5.97 -51.93 -0.31 0.70 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 41 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 42 H 0.09 1.55 7.04 -51.93 -0.37 1.18 16 LS Contribution 320.34 15.07 4.83 4.83 Total: -1.00 -30.55 320.34 -7.05 -37.60 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -7.32 Total: -1.02 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 0.17 Total: -7.16 kcal Atomic # 7 Polarization: -36.71 SS G_CDS: 0.21 Total: -36.50 kcal Atomic # 8 Polarization: -14.73 SS G_CDS: 0.08 Total: -14.65 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -30.55 -7.05 -37.60 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597496809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.542 kcal (2) G-P(sol) polarization free energy of solvation -30.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.598 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds