Wall clock time and date at job start Mon Mar 30 2020 07:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09007 * 109.47180 * 2 1 4 4 C 1.50698 * 109.47200 * 240.00346 * 2 1 3 5 5 H 1.08004 * 119.99895 * 239.99514 * 4 2 1 6 6 C 1.37878 * 120.00183 * 59.99702 * 4 2 1 7 7 N 1.31515 * 119.99633 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99939 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47241 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.46966 * 120.00018 * 8 6 4 11 11 H 1.48504 * 109.47107 * 239.99988 * 8 6 4 12 12 C 1.50699 * 109.47469 * 120.00049 * 2 1 3 13 13 O 1.21279 * 119.99929 * 95.25294 * 12 2 1 14 14 N 1.34788 * 119.99914 * 275.25608 * 12 2 1 15 15 C 1.46923 * 120.62800 * 355.30361 * 14 12 2 16 16 C 1.53189 * 108.77318 * 126.37334 * 15 14 12 17 17 H 1.09008 * 109.49850 * 294.67842 * 16 15 14 18 18 C 1.52997 * 109.49917 * 174.61694 * 16 15 14 19 19 C 1.53035 * 109.31780 * 54.62970 * 16 15 14 20 20 C 1.53041 * 109.53994 * 298.64038 * 19 16 15 21 21 C 1.53007 * 109.49550 * 301.40909 * 20 19 16 22 22 C 1.53001 * 109.50161 * 181.31427 * 20 19 16 23 23 C 1.46918 * 120.62837 * 175.28107 * 14 12 2 24 24 H 1.09005 * 109.47142 * 184.89508 * 1 2 3 25 25 H 1.08999 * 109.47411 * 304.88938 * 1 2 3 26 26 H 1.08998 * 109.47386 * 64.88908 * 1 2 3 27 27 H 0.97002 * 119.99692 * 180.02562 * 7 6 4 28 28 H 1.08997 * 109.58609 * 246.15456 * 15 14 12 29 29 H 1.08997 * 109.59069 * 6.44016 * 15 14 12 30 30 H 1.09008 * 109.46901 * 59.99759 * 18 16 15 31 31 H 1.08999 * 109.47282 * 179.97438 * 18 16 15 32 32 H 1.09002 * 109.47403 * 299.99665 * 18 16 15 33 33 H 1.08996 * 109.46414 * 178.61576 * 19 16 15 34 34 H 1.09005 * 109.45947 * 58.65758 * 19 16 15 35 35 H 1.08997 * 109.47232 * 179.83568 * 21 20 19 36 36 H 1.09001 * 109.47111 * 299.83926 * 21 20 19 37 37 H 1.09001 * 109.47046 * 59.83533 * 21 20 19 38 38 H 1.09004 * 109.46991 * 300.16221 * 22 20 19 39 39 H 1.09000 * 109.46850 * 60.15772 * 22 20 19 40 40 H 1.09000 * 109.47068 * 180.15835 * 22 20 19 41 41 H 1.09002 * 109.58632 * 113.84519 * 23 14 12 42 42 H 1.09000 * 109.70471 * 353.49113 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4828 7 7 0.9434 0.8303 -2.6033 8 14 2.3213 -1.1202 -4.0080 9 1 3.1465 -2.2868 -3.6038 10 1 1.1660 -1.5865 -4.8161 11 1 3.1465 -0.1872 -4.8165 12 6 2.0323 -0.7104 1.2304 13 8 2.3252 -1.8860 1.1748 14 7 2.1562 -0.0392 2.3927 15 6 1.9040 1.4069 2.4526 16 6 0.8742 1.6826 3.5527 17 1 -0.0805 1.2338 3.2782 18 6 0.6986 3.1932 3.7209 19 6 1.3645 1.0751 4.8689 20 6 1.5086 -0.4403 4.7109 21 6 0.1602 -1.0424 4.3103 22 6 1.9674 -1.0507 6.0367 23 6 2.5455 -0.7401 3.6239 24 1 -0.3634 -1.0240 0.0877 25 1 -0.3634 0.5878 0.8429 26 1 -0.3634 0.4361 -0.9305 27 1 0.7088 1.1615 -3.4843 28 1 2.8321 1.9306 2.6815 29 1 1.5176 1.7505 1.4931 30 1 0.3517 3.6253 2.7821 31 1 -0.0346 3.3889 4.5034 32 1 1.6531 3.6415 3.9965 33 1 0.6453 1.2911 5.6588 34 1 2.3309 1.5064 5.1302 35 1 0.2639 -2.1213 4.1950 36 1 -0.5773 -0.8288 5.0839 37 1 -0.1665 -0.6059 3.3664 38 1 2.9272 -0.6202 6.3221 39 1 1.2292 -0.8372 6.8098 40 1 2.0725 -2.1297 5.9229 41 1 3.5260 -0.3915 3.9483 42 1 2.5820 -1.8138 3.4398 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597496809.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:13 Heat of formation + Delta-G solvation = -78.279122 kcal Electronic energy + Delta-G solvation = -20338.246616 eV Core-core repulsion = 17509.519212 eV Total energy + Delta-G solvation = -2828.727404 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.46072 -39.15213 -35.98715 -35.27583 -34.34041 -32.42886 -28.25799 -27.84517 -27.52325 -27.27718 -26.59598 -23.84090 -21.67894 -20.36080 -19.31891 -18.45889 -17.72347 -17.03316 -16.28005 -16.20040 -15.81647 -15.37712 -14.99202 -14.76821 -14.40886 -14.26952 -13.88101 -13.49082 -13.16597 -13.04329 -12.97538 -12.85458 -12.75761 -12.66423 -12.60622 -12.48777 -12.30046 -12.18581 -12.05345 -11.77986 -11.70497 -11.24323 -11.15671 -11.00217 -10.60749 -10.19471 -9.44054 -8.17237 -6.28169 1.37721 1.39597 1.52919 1.90926 2.21760 2.45615 3.11530 3.63360 3.82236 3.86321 3.98347 4.16117 4.23163 4.39754 4.53206 4.62145 4.66990 4.71232 4.72615 4.76846 4.86964 4.87913 4.94850 4.96839 4.98106 5.01169 5.12804 5.13792 5.16200 5.27954 5.36498 5.37980 5.42581 5.49768 5.60116 5.67263 5.76090 5.94056 6.18755 6.61096 6.78512 7.36966 7.50666 8.88544 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.030549 B = 0.006323 C = 0.005674 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 916.326045 B = 4427.445166 C = 4933.706400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.029 3.971 3 H 0.043 0.957 4 C -0.529 4.529 5 H 0.041 0.959 6 C 0.022 3.978 7 N -0.908 5.908 8 Si 0.956 3.044 9 H -0.281 1.281 10 H -0.274 1.274 11 H -0.270 1.270 12 C 0.521 3.479 13 O -0.594 6.594 14 N -0.614 5.614 15 C 0.106 3.894 16 C -0.105 4.105 17 H 0.064 0.936 18 C -0.138 4.138 19 C -0.093 4.093 20 C -0.075 4.075 21 C -0.137 4.137 22 C -0.132 4.132 23 C 0.116 3.884 24 H 0.014 0.986 25 H 0.042 0.958 26 H 0.075 0.925 27 H 0.266 0.734 28 H 0.077 0.923 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.072 0.928 32 H 0.066 0.934 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.036 0.964 36 H 0.074 0.926 37 H 0.036 0.964 38 H 0.067 0.933 39 H 0.075 0.925 40 H 0.049 0.951 41 H 0.072 0.928 42 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.989 5.413 17.253 18.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.008 3.992 3 H 0.061 0.939 4 C -0.567 4.567 5 H 0.059 0.941 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.781 3.219 9 H -0.206 1.206 10 H -0.199 1.199 11 H -0.195 1.195 12 C 0.312 3.688 13 O -0.475 6.475 14 N -0.346 5.346 15 C -0.017 4.017 16 C -0.124 4.124 17 H 0.082 0.918 18 C -0.196 4.196 19 C -0.131 4.131 20 C -0.076 4.076 21 C -0.194 4.194 22 C -0.190 4.190 23 C -0.006 4.006 24 H 0.034 0.966 25 H 0.061 0.939 26 H 0.094 0.906 27 H 0.076 0.924 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.055 0.945 36 H 0.093 0.907 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.093 0.907 40 H 0.068 0.932 41 H 0.090 0.910 42 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.903 4.916 17.085 17.802 hybrid contribution 0.309 -0.740 -1.310 1.536 sum -0.594 4.176 15.775 16.329 Atomic orbital electron populations 1.21479 0.95431 0.98407 1.01835 1.18792 0.94873 0.96044 0.89485 0.93901 1.21259 1.31785 1.12361 0.91338 0.94108 1.25579 0.95130 0.95728 1.01323 1.69939 1.37009 1.23451 1.24358 0.85544 0.78406 0.78584 0.79357 1.20647 1.19895 1.19541 1.21621 0.75135 0.86697 0.85329 1.90480 1.52242 1.19049 1.85710 1.48218 1.68765 1.09703 1.07915 1.22025 0.99704 0.79178 1.00746 1.21536 0.98138 0.97710 0.95059 0.91764 1.21721 1.02732 0.92952 1.02203 1.21610 1.02471 0.92422 0.96559 1.20912 0.94540 0.97081 0.95029 1.21837 0.97028 0.99467 1.01053 1.21754 1.02134 1.00272 0.94796 1.21712 0.97863 0.97168 0.83884 0.96636 0.93889 0.90598 0.92447 0.90528 0.90522 0.92969 0.90928 0.91481 0.89714 0.90613 0.94514 0.90685 0.94447 0.91372 0.90654 0.93202 0.90954 0.92331 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.57 8.92 71.98 0.64 -4.92 16 2 C 0.03 1.53 1.80 -12.29 -0.02 1.50 16 3 H 0.04 2.26 6.28 -2.38 -0.01 2.25 16 4 C -0.53 -31.59 8.33 25.60 0.21 -31.37 16 5 H 0.04 2.62 7.02 -2.91 -0.02 2.60 16 6 C 0.02 1.23 5.29 84.65 0.45 1.68 16 7 N -0.91 -51.40 11.29 21.45 0.24 -51.15 16 8 Si 0.96 45.54 29.54 68.60 2.03 47.57 16 9 H -0.28 -13.76 7.11 99.48 0.71 -13.06 16 10 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -12.21 7.11 99.48 0.71 -11.50 16 12 C 0.52 25.54 6.80 87.65 0.60 26.14 16 13 O -0.59 -33.62 15.24 -3.03 -0.05 -33.67 16 14 N -0.61 -22.88 2.41 -818.93 -1.97 -24.85 16 15 C 0.11 3.20 5.55 86.36 0.48 3.68 16 16 C -0.11 -2.43 2.53 -10.72 -0.03 -2.45 16 17 H 0.06 1.70 6.33 -2.38 -0.02 1.68 16 18 C -0.14 -2.47 9.20 71.98 0.66 -1.81 16 19 C -0.09 -1.77 4.00 30.62 0.12 -1.65 16 20 C -0.07 -1.73 0.77 -52.10 -0.04 -1.77 16 21 C -0.14 -3.60 7.99 71.98 0.58 -3.02 16 22 C -0.13 -2.31 8.48 71.98 0.61 -1.70 16 23 C 0.12 3.62 5.09 86.36 0.44 4.06 16 24 H 0.01 0.75 8.14 -2.38 -0.02 0.73 16 25 H 0.04 1.79 7.86 -2.39 -0.02 1.77 16 26 H 0.08 4.03 5.96 -2.39 -0.01 4.01 16 27 H 0.27 14.14 8.31 -92.71 -0.77 13.37 16 28 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.08 2.67 5.15 -2.39 -0.01 2.66 16 30 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 31 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 35 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 37 H 0.04 1.17 5.97 -2.39 -0.01 1.16 16 38 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 39 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 40 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 42 H 0.06 2.16 7.04 -2.39 -0.02 2.15 16 Total: -1.00 -68.53 320.34 5.92 -62.62 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: 0.97 Total: 11.14 kcal Atomic # 6 Polarization: -16.35 SS G_CDS: 4.70 Total: -11.65 kcal Atomic # 7 Polarization: -74.27 SS G_CDS: -1.73 Total: -76.01 kcal Atomic # 8 Polarization: -33.62 SS G_CDS: -0.05 Total: -33.67 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -68.53 5.92 -62.62 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597496809.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.663 kcal (2) G-P(sol) polarization free energy of solvation -68.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.197 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.918 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.279 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds