Wall clock time and date at job start Mon Mar 30 2020 07:15:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47162 * 2 1 4 4 C 1.50702 * 109.47252 * 120.00137 * 2 1 3 5 5 H 1.08000 * 120.00288 * 119.99212 * 4 2 1 6 6 C 1.37874 * 119.99635 * 300.00531 * 4 2 1 7 7 N 1.31526 * 119.99934 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00341 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47291 * 90.00480 * 8 6 4 10 10 H 1.48498 * 109.47319 * 210.00291 * 8 6 4 11 11 H 1.48494 * 109.47110 * 330.00279 * 8 6 4 12 12 C 1.50698 * 109.47383 * 240.00137 * 2 1 3 13 13 O 1.21288 * 119.99814 * 264.41381 * 12 2 1 14 14 N 1.34774 * 120.00300 * 84.41210 * 12 2 1 15 15 C 1.46924 * 120.62789 * 355.34869 * 14 12 2 16 16 C 1.53194 * 108.89167 * 126.34131 * 15 14 12 17 17 H 1.08995 * 109.50060 * 294.75528 * 16 15 14 18 18 C 1.53007 * 109.49659 * 174.65897 * 16 15 14 19 19 C 1.53351 * 109.14848 * 54.58227 * 16 15 14 20 20 C 1.53045 * 109.60348 * 298.70951 * 19 16 15 21 21 C 1.52995 * 109.49793 * 301.42302 * 20 19 16 22 22 C 1.53006 * 109.49282 * 181.32654 * 20 19 16 23 23 C 1.46925 * 120.63474 * 175.37393 * 14 12 2 24 24 H 1.09003 * 109.46881 * 66.33711 * 1 2 3 25 25 H 1.09002 * 109.47411 * 186.33095 * 1 2 3 26 26 H 1.08998 * 109.47335 * 306.33924 * 1 2 3 27 27 H 0.96998 * 119.99775 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.58917 * 246.20309 * 15 14 12 29 29 H 1.09007 * 109.59059 * 6.48904 * 15 14 12 30 30 H 1.08999 * 109.47187 * 60.00379 * 18 16 15 31 31 H 1.09003 * 109.46913 * 180.02562 * 18 16 15 32 32 H 1.09004 * 109.47106 * 300.00376 * 18 16 15 33 33 H 1.09001 * 109.41565 * 178.67455 * 19 16 15 34 34 H 1.09003 * 109.42195 * 58.74854 * 19 16 15 35 35 H 1.08999 * 109.47101 * 179.83838 * 21 20 19 36 36 H 1.09006 * 109.47017 * 299.83827 * 21 20 19 37 37 H 1.08996 * 109.47442 * 59.83779 * 21 20 19 38 38 H 1.08996 * 109.46750 * 300.15798 * 22 20 19 39 39 H 1.08995 * 109.47068 * 60.16248 * 22 20 19 40 40 H 1.08999 * 109.46412 * 180.16456 * 22 20 19 41 41 H 1.09004 * 109.58513 * 353.37477 * 23 14 12 42 42 H 1.09000 * 109.58823 * 113.65463 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 2.1371 -0.8597 3.5566 8 14 0.6256 1.2796 2.6541 9 1 -0.8023 0.8742 2.6993 10 1 0.9769 1.9952 3.9070 11 1 0.8489 2.1771 1.4923 12 6 2.0323 -0.7104 -1.2304 13 8 2.3309 -1.8845 -1.1734 14 7 2.1499 -0.0410 -2.3943 15 6 1.6973 1.3524 -2.5054 16 6 2.8484 2.2061 -3.0467 17 1 3.6613 2.2231 -2.3208 18 6 2.3537 3.6328 -3.2937 19 6 3.3501 1.5983 -4.3622 20 6 3.8732 0.1828 -4.1072 21 6 5.0009 0.2335 -3.0746 22 6 4.4034 -0.4088 -5.4149 23 6 2.7324 -0.6909 -3.5762 24 1 -0.3633 0.4125 -0.9413 25 1 -0.3634 -1.0214 0.1133 26 1 -0.3634 0.6089 0.8278 27 1 1.9030 -0.5281 4.4375 28 1 0.8490 1.4078 -3.1877 29 1 1.4006 1.7198 -1.5229 30 1 1.9940 4.0598 -2.3576 31 1 3.1730 4.2397 -3.6792 32 1 1.5417 3.6150 -4.0207 33 1 4.1538 2.2158 -4.7633 34 1 2.5300 1.5588 -5.0792 35 1 5.3713 -0.7752 -2.8912 36 1 5.8124 0.8553 -3.4529 37 1 4.6228 0.6564 -2.1439 38 1 3.5996 -0.4431 -6.1503 39 1 5.2149 0.2132 -5.7924 40 1 4.7732 -1.4179 -5.2334 41 1 3.1211 -1.6711 -3.2999 42 1 1.9680 -0.8044 -4.3449 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597496910.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:16 Heat of formation + Delta-G solvation = -51.971333 kcal Electronic energy + Delta-G solvation = -20389.455563 eV Core-core repulsion = 17561.868951 eV Total energy + Delta-G solvation = -2827.586612 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.15177 -37.73222 -34.52142 -33.61087 -33.12658 -31.15018 -27.25657 -26.79015 -26.68656 -25.42214 -25.08340 -22.21823 -20.71298 -18.82888 -18.15914 -16.96415 -15.85403 -15.60624 -15.16448 -14.78278 -14.46364 -14.25657 -13.61790 -13.29788 -13.21251 -12.92380 -12.63323 -12.27495 -12.24289 -12.17680 -11.99409 -11.78733 -11.52255 -11.42325 -11.24879 -10.98140 -10.79285 -10.74002 -10.49044 -10.30059 -10.23612 -10.15316 -9.63410 -9.09122 -8.61960 -8.54950 -8.07121 -6.04978 -4.04623 3.24258 3.29771 3.36177 3.55258 3.62252 4.38135 4.61168 4.77089 4.83124 4.94952 5.23432 5.25103 5.36063 5.40786 5.57399 5.58032 5.59887 5.62799 5.71632 5.79123 5.84397 5.91123 5.96550 6.02706 6.07776 6.11220 6.12204 6.18553 6.26188 6.31122 6.33097 6.44883 6.50437 6.59220 6.69626 7.07239 7.19512 7.58018 8.07244 8.54926 9.09780 9.13706 9.54120 11.08173 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.007239 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.143192 B = 3867.264275 C = 4366.830763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.003 4.003 3 H 0.046 0.954 4 C -0.502 4.502 5 H 0.088 0.912 6 C 0.071 3.929 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.267 1.267 12 C 0.534 3.466 13 O -0.534 6.534 14 N -0.625 5.625 15 C 0.112 3.888 16 C -0.114 4.114 17 H 0.081 0.919 18 C -0.144 4.144 19 C -0.098 4.098 20 C -0.081 4.081 21 C -0.139 4.139 22 C -0.137 4.137 23 C 0.122 3.878 24 H 0.033 0.967 25 H 0.061 0.939 26 H 0.047 0.953 27 H 0.264 0.736 28 H 0.060 0.940 29 H 0.092 0.908 30 H 0.058 0.942 31 H 0.055 0.945 32 H 0.054 0.946 33 H 0.061 0.939 34 H 0.060 0.940 35 H 0.054 0.946 36 H 0.049 0.951 37 H 0.064 0.936 38 H 0.053 0.947 39 H 0.055 0.945 40 H 0.057 0.943 41 H 0.088 0.912 42 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.808 8.675 -17.198 19.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.025 4.025 3 H 0.064 0.936 4 C -0.540 4.540 5 H 0.106 0.894 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.714 3.286 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.193 1.193 12 C 0.324 3.676 13 O -0.409 6.409 14 N -0.360 5.360 15 C -0.011 4.011 16 C -0.133 4.133 17 H 0.099 0.901 18 C -0.202 4.202 19 C -0.136 4.136 20 C -0.082 4.082 21 C -0.197 4.197 22 C -0.195 4.195 23 C -0.001 4.001 24 H 0.052 0.948 25 H 0.080 0.920 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.078 0.922 29 H 0.110 0.890 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.073 0.927 33 H 0.080 0.920 34 H 0.079 0.921 35 H 0.073 0.927 36 H 0.068 0.932 37 H 0.082 0.918 38 H 0.072 0.928 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.107 0.893 42 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 0.966 7.992 -16.929 18.746 hybrid contribution -0.632 0.916 0.200 1.130 sum 0.334 8.908 -16.728 18.955 Atomic orbital electron populations 1.22098 0.97114 1.02016 0.98906 1.19319 0.93326 0.97223 0.92582 0.93591 1.20888 1.32131 1.13720 0.87310 0.89366 1.24963 0.95782 0.96602 0.95725 1.69888 1.45522 1.40146 0.97855 0.86917 0.80878 0.83828 0.76984 1.20477 1.22264 1.19277 1.21263 0.75831 0.87076 0.83424 1.90566 1.49222 1.16648 1.84464 1.48241 1.63502 1.13101 1.11108 1.21774 0.95580 0.81333 1.02445 1.21669 0.98953 0.94670 0.98012 0.90078 1.21756 1.01015 0.95603 1.01784 1.21659 1.00191 0.95002 0.96754 1.20922 0.95966 0.95577 0.95705 1.21858 0.96938 1.01849 0.99023 1.21788 1.00674 1.00903 0.96126 1.21499 0.94154 0.97089 0.87332 0.94762 0.92020 0.93446 0.92569 0.92206 0.89016 0.92330 0.92604 0.92734 0.92048 0.92101 0.92700 0.93153 0.91753 0.92758 0.92594 0.92435 0.89336 0.92610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.10 8.33 37.15 0.31 -2.79 16 2 C 0.00 -0.07 1.37 -92.93 -0.13 -0.20 16 3 H 0.05 1.05 5.56 -51.93 -0.29 0.76 16 4 C -0.50 -14.67 8.91 -34.44 -0.31 -14.98 16 5 H 0.09 2.94 7.26 -52.49 -0.38 2.55 16 6 C 0.07 2.06 5.45 -17.82 -0.10 1.97 16 7 N -0.90 -27.83 13.96 55.43 0.77 -27.06 16 8 Si 0.88 21.43 24.31 -169.99 -4.13 17.30 16 9 H -0.28 -6.57 6.93 56.52 0.39 -6.18 16 10 H -0.30 -7.18 7.11 56.52 0.40 -6.78 16 11 H -0.27 -5.97 6.53 56.52 0.37 -5.60 16 12 C 0.53 12.06 6.80 -10.99 -0.07 11.99 16 13 O -0.53 -14.08 15.23 5.55 0.08 -14.00 16 14 N -0.62 -10.91 2.41 -172.77 -0.42 -11.33 16 15 C 0.11 1.61 5.05 -3.71 -0.02 1.59 16 16 C -0.11 -1.37 2.54 -90.33 -0.23 -1.60 16 17 H 0.08 1.10 6.34 -51.93 -0.33 0.77 16 18 C -0.14 -1.40 9.21 37.16 0.34 -1.06 16 19 C -0.10 -1.06 4.01 -26.53 -0.11 -1.17 16 20 C -0.08 -0.99 0.77 -154.39 -0.12 -1.11 16 21 C -0.14 -1.91 7.99 37.16 0.30 -1.62 16 22 C -0.14 -1.37 8.48 37.16 0.32 -1.05 16 23 C 0.12 1.84 5.10 -3.71 -0.02 1.83 16 24 H 0.03 0.61 7.39 -51.93 -0.38 0.22 16 25 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 26 H 0.05 1.03 3.47 -51.93 -0.18 0.85 16 27 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.09 1.42 5.15 -51.93 -0.27 1.16 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 32 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 36 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 37 H 0.06 1.03 5.97 -51.93 -0.31 0.72 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.09 1.53 7.03 -51.93 -0.37 1.16 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 312.82 15.07 4.71 4.71 Total: -1.00 -32.52 312.82 -5.99 -38.51 By element: Atomic # 1 Polarization: 7.24 SS G_CDS: -7.18 Total: 0.06 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: 0.17 Total: -8.20 kcal Atomic # 7 Polarization: -38.75 SS G_CDS: 0.36 Total: -38.39 kcal Atomic # 8 Polarization: -14.08 SS G_CDS: 0.08 Total: -14.00 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.13 Total: 17.30 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -32.52 -5.99 -38.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597496910.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.458 kcal (2) G-P(sol) polarization free energy of solvation -32.523 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.991 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.971 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds