Wall clock time and date at job start Mon Mar 30 2020 07:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47162 * 2 1 4 4 C 1.50702 * 109.47252 * 120.00137 * 2 1 3 5 5 H 1.08000 * 120.00288 * 119.99212 * 4 2 1 6 6 C 1.37874 * 119.99635 * 300.00531 * 4 2 1 7 7 N 1.31526 * 119.99934 * 179.97438 * 6 4 2 8 8 Si 1.86797 * 120.00341 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47291 * 90.00480 * 8 6 4 10 10 H 1.48498 * 109.47319 * 210.00291 * 8 6 4 11 11 H 1.48494 * 109.47110 * 330.00279 * 8 6 4 12 12 C 1.50698 * 109.47383 * 240.00137 * 2 1 3 13 13 O 1.21288 * 119.99814 * 264.41381 * 12 2 1 14 14 N 1.34774 * 120.00300 * 84.41210 * 12 2 1 15 15 C 1.46924 * 120.62789 * 355.34869 * 14 12 2 16 16 C 1.53194 * 108.89167 * 126.34131 * 15 14 12 17 17 H 1.08995 * 109.50060 * 294.75528 * 16 15 14 18 18 C 1.53007 * 109.49659 * 174.65897 * 16 15 14 19 19 C 1.53351 * 109.14848 * 54.58227 * 16 15 14 20 20 C 1.53045 * 109.60348 * 298.70951 * 19 16 15 21 21 C 1.52995 * 109.49793 * 301.42302 * 20 19 16 22 22 C 1.53006 * 109.49282 * 181.32654 * 20 19 16 23 23 C 1.46925 * 120.63474 * 175.37393 * 14 12 2 24 24 H 1.09003 * 109.46881 * 66.33711 * 1 2 3 25 25 H 1.09002 * 109.47411 * 186.33095 * 1 2 3 26 26 H 1.08998 * 109.47335 * 306.33924 * 1 2 3 27 27 H 0.96998 * 119.99775 * 179.97438 * 7 6 4 28 28 H 1.08998 * 109.58917 * 246.20309 * 15 14 12 29 29 H 1.09007 * 109.59059 * 6.48904 * 15 14 12 30 30 H 1.08999 * 109.47187 * 60.00379 * 18 16 15 31 31 H 1.09003 * 109.46913 * 180.02562 * 18 16 15 32 32 H 1.09004 * 109.47106 * 300.00376 * 18 16 15 33 33 H 1.09001 * 109.41565 * 178.67455 * 19 16 15 34 34 H 1.09003 * 109.42195 * 58.74854 * 19 16 15 35 35 H 1.08999 * 109.47101 * 179.83838 * 21 20 19 36 36 H 1.09006 * 109.47017 * 299.83827 * 21 20 19 37 37 H 1.08996 * 109.47442 * 59.83779 * 21 20 19 38 38 H 1.08996 * 109.46750 * 300.15798 * 22 20 19 39 39 H 1.08995 * 109.47068 * 60.16248 * 22 20 19 40 40 H 1.08999 * 109.46412 * 180.16456 * 22 20 19 41 41 H 1.09004 * 109.58513 * 353.37477 * 23 14 12 42 42 H 1.09000 * 109.58823 * 113.65463 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.6531 -1.5886 1.1314 6 6 1.6991 -0.2394 2.4827 7 7 2.1371 -0.8597 3.5566 8 14 0.6256 1.2796 2.6541 9 1 -0.8023 0.8742 2.6993 10 1 0.9769 1.9952 3.9070 11 1 0.8489 2.1771 1.4923 12 6 2.0323 -0.7104 -1.2304 13 8 2.3309 -1.8845 -1.1734 14 7 2.1499 -0.0410 -2.3943 15 6 1.6973 1.3524 -2.5054 16 6 2.8484 2.2061 -3.0467 17 1 3.6613 2.2231 -2.3208 18 6 2.3537 3.6328 -3.2937 19 6 3.3501 1.5983 -4.3622 20 6 3.8732 0.1828 -4.1072 21 6 5.0009 0.2335 -3.0746 22 6 4.4034 -0.4088 -5.4149 23 6 2.7324 -0.6909 -3.5762 24 1 -0.3633 0.4125 -0.9413 25 1 -0.3634 -1.0214 0.1133 26 1 -0.3634 0.6089 0.8278 27 1 1.9030 -0.5281 4.4375 28 1 0.8490 1.4078 -3.1877 29 1 1.4006 1.7198 -1.5229 30 1 1.9940 4.0598 -2.3576 31 1 3.1730 4.2397 -3.6792 32 1 1.5417 3.6150 -4.0207 33 1 4.1538 2.2158 -4.7633 34 1 2.5300 1.5588 -5.0792 35 1 5.3713 -0.7752 -2.8912 36 1 5.8124 0.8553 -3.4529 37 1 4.6228 0.6564 -2.1439 38 1 3.5996 -0.4431 -6.1503 39 1 5.2149 0.2132 -5.7924 40 1 4.7732 -1.4179 -5.2334 41 1 3.1211 -1.6711 -3.2999 42 1 1.9680 -0.8044 -4.3449 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597496910.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:15 Heat of formation + Delta-G solvation = -73.533866 kcal Electronic energy + Delta-G solvation = -20390.390585 eV Core-core repulsion = 17561.868951 eV Total energy + Delta-G solvation = -2828.521634 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.51238 -39.22016 -36.05117 -35.26519 -34.36587 -33.20523 -28.30050 -27.91974 -27.52305 -27.20946 -26.68800 -23.97057 -21.67331 -20.30241 -19.37576 -18.94808 -17.67703 -17.23682 -16.30503 -16.17601 -16.01257 -15.40972 -15.01340 -14.83122 -14.63453 -14.29674 -14.11674 -13.80453 -13.51809 -13.18576 -12.99864 -12.88803 -12.86848 -12.70196 -12.60008 -12.48775 -12.25293 -12.16581 -11.79281 -11.71251 -11.48994 -11.28260 -11.24970 -11.09941 -10.78496 -10.36011 -9.47518 -8.30298 -6.38093 1.30884 1.36919 1.48477 1.82747 2.17610 2.31953 3.03190 3.60618 3.78889 3.85248 3.96675 4.00524 4.22060 4.32703 4.39690 4.48976 4.57591 4.61024 4.66843 4.70458 4.75296 4.77599 4.82980 4.87002 4.94161 4.95183 4.97308 5.12894 5.13495 5.14942 5.27797 5.35281 5.37933 5.42239 5.46569 5.51308 5.59944 5.75196 6.22135 6.53162 6.75300 7.22729 7.44713 8.87739 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.025892 B = 0.007239 C = 0.006410 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1081.143192 B = 3867.264275 C = 4366.830763 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.003 4.003 3 H 0.065 0.935 4 C -0.520 4.520 5 H 0.021 0.979 6 C 0.008 3.992 7 N -0.952 5.952 8 Si 0.957 3.043 9 H -0.261 1.261 10 H -0.295 1.295 11 H -0.228 1.228 12 C 0.527 3.473 13 O -0.591 6.591 14 N -0.613 5.613 15 C 0.101 3.899 16 C -0.112 4.112 17 H 0.059 0.941 18 C -0.138 4.138 19 C -0.092 4.092 20 C -0.076 4.076 21 C -0.138 4.138 22 C -0.132 4.132 23 C 0.117 3.883 24 H 0.079 0.921 25 H 0.041 0.959 26 H 0.052 0.948 27 H 0.268 0.732 28 H 0.092 0.908 29 H 0.082 0.918 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.032 0.968 36 H 0.073 0.927 37 H 0.035 0.965 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.046 0.954 41 H 0.054 0.946 42 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.820 12.492 -20.313 23.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.024 4.024 3 H 0.082 0.918 4 C -0.558 4.558 5 H 0.040 0.960 6 C -0.189 4.189 7 N -0.591 5.591 8 Si 0.781 3.219 9 H -0.187 1.187 10 H -0.222 1.222 11 H -0.151 1.151 12 C 0.318 3.682 13 O -0.471 6.471 14 N -0.345 5.345 15 C -0.021 4.021 16 C -0.131 4.131 17 H 0.077 0.923 18 C -0.195 4.195 19 C -0.130 4.130 20 C -0.076 4.076 21 C -0.196 4.196 22 C -0.190 4.190 23 C -0.005 4.005 24 H 0.097 0.903 25 H 0.060 0.940 26 H 0.070 0.930 27 H 0.077 0.923 28 H 0.110 0.890 29 H 0.100 0.900 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.051 0.949 36 H 0.092 0.908 37 H 0.054 0.946 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.065 0.935 41 H 0.073 0.927 42 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -0.661 11.853 -20.115 23.357 hybrid contribution -0.014 -0.371 1.144 1.203 sum -0.674 11.482 -18.971 22.185 Atomic orbital electron populations 1.21991 0.94720 1.01360 1.01478 1.19229 0.95177 0.97166 0.90840 0.91761 1.21026 1.31868 1.12421 0.90512 0.96031 1.26031 0.97343 1.00827 0.94667 1.70081 1.47561 1.42761 0.98743 0.85738 0.78807 0.79036 0.78290 1.18699 1.22233 1.15081 1.21107 0.75851 0.86476 0.84811 1.90541 1.52006 1.19013 1.85523 1.48197 1.61915 1.14340 1.10057 1.22142 0.97687 0.79259 1.02989 1.21642 0.97377 0.95964 0.98108 0.92255 1.21714 1.01990 0.93600 1.02230 1.21654 1.01483 0.93417 0.96408 1.20919 0.94056 0.96612 0.96051 1.21851 0.98418 1.00698 0.98597 1.21752 1.01766 1.00505 0.94949 1.21728 0.95896 0.96192 0.86728 0.90269 0.94005 0.92991 0.92297 0.89033 0.90018 0.92653 0.91352 0.91013 0.90057 0.90036 0.94920 0.90803 0.94620 0.90967 0.90834 0.93452 0.92714 0.90013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.68 8.33 71.98 0.60 -5.08 16 2 C 0.00 -0.12 1.37 -12.29 -0.02 -0.14 16 3 H 0.06 2.84 5.56 -2.39 -0.01 2.83 16 4 C -0.52 -32.09 8.91 25.60 0.23 -31.86 16 5 H 0.02 1.56 7.26 -2.91 -0.02 1.54 16 6 C 0.01 0.47 5.45 84.65 0.46 0.93 16 7 N -0.95 -62.02 13.96 21.45 0.30 -61.72 16 8 Si 0.96 43.55 24.31 68.60 1.67 45.22 16 9 H -0.26 -11.20 6.93 99.48 0.69 -10.51 16 10 H -0.29 -13.36 7.11 99.48 0.71 -12.66 16 11 H -0.23 -8.86 6.53 99.48 0.65 -8.21 16 12 C 0.53 24.57 6.80 87.66 0.60 25.17 16 13 O -0.59 -33.46 15.23 -3.05 -0.05 -33.51 16 14 N -0.61 -20.87 2.41 -818.90 -1.97 -22.85 16 15 C 0.10 2.55 5.05 86.36 0.44 2.99 16 16 C -0.11 -2.28 2.54 -10.61 -0.03 -2.31 16 17 H 0.06 1.49 6.34 -2.39 -0.02 1.47 16 18 C -0.14 -2.02 9.21 71.98 0.66 -1.35 16 19 C -0.09 -1.58 4.01 30.73 0.12 -1.46 16 20 C -0.08 -1.68 0.77 -52.10 -0.04 -1.73 16 21 C -0.14 -3.78 7.99 71.98 0.58 -3.20 16 22 C -0.13 -2.24 8.48 71.98 0.61 -1.63 16 23 C 0.12 3.42 5.10 86.36 0.44 3.86 16 24 H 0.08 2.52 7.39 -2.39 -0.02 2.50 16 25 H 0.04 1.86 8.14 -2.39 -0.02 1.84 16 26 H 0.05 2.08 3.47 -2.39 -0.01 2.07 16 27 H 0.27 16.12 8.31 -92.71 -0.77 15.35 16 28 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 29 H 0.08 2.24 5.15 -2.38 -0.01 2.23 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.07 0.83 8.14 -2.38 -0.02 0.82 16 33 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 34 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 35 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.07 1.62 8.14 -2.38 -0.02 1.61 16 37 H 0.03 1.16 5.97 -2.39 -0.01 1.15 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 40 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 41 H 0.05 1.98 7.03 -2.39 -0.02 1.96 16 42 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 Total: -1.00 -78.66 312.82 5.50 -73.16 By element: Atomic # 1 Polarization: 14.61 SS G_CDS: 0.90 Total: 15.51 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: 4.65 Total: -15.82 kcal Atomic # 7 Polarization: -82.89 SS G_CDS: -1.68 Total: -84.57 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.05 Total: -33.51 kcal Atomic # 14 Polarization: 43.55 SS G_CDS: 1.67 Total: 45.22 kcal Total: -78.66 5.50 -73.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597496910.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.370 kcal (2) G-P(sol) polarization free energy of solvation -78.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.032 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.164 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds