Wall clock time and date at job start Mon Mar 30 2020 07:15:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09007 * 109.46915 * 2 1 4 4 C 1.50696 * 109.47422 * 120.00441 * 2 1 3 5 5 H 1.07997 * 120.00106 * 120.00032 * 4 2 1 6 6 C 1.37875 * 119.99835 * 299.99768 * 4 2 1 7 7 N 1.31523 * 120.00341 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99937 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47352 * 89.99935 * 8 6 4 10 10 H 1.48504 * 109.46923 * 210.00055 * 8 6 4 11 11 H 1.48497 * 109.47082 * 329.99656 * 8 6 4 12 12 C 1.50705 * 109.47013 * 240.00510 * 2 1 3 13 13 O 1.21280 * 119.99677 * 274.71629 * 12 2 1 14 14 N 1.34777 * 119.99851 * 94.71787 * 12 2 1 15 15 C 1.46920 * 120.63559 * 354.59464 * 14 12 2 16 16 C 1.53192 * 108.77947 * 233.63224 * 15 14 12 17 17 H 1.08997 * 109.49371 * 65.31332 * 16 15 14 18 18 C 1.53001 * 109.49867 * 185.41070 * 16 15 14 19 19 C 1.53046 * 109.30917 * 305.36456 * 16 15 14 20 20 C 1.53040 * 109.53717 * 61.36684 * 19 16 15 21 21 C 1.52994 * 109.50031 * 58.58282 * 20 19 16 22 22 C 1.52998 * 109.49566 * 178.65051 * 20 19 16 23 23 C 1.46998 * 120.60906 * 174.62035 * 14 12 2 24 24 H 1.08998 * 109.47204 * 185.07069 * 1 2 3 25 25 H 1.09003 * 109.46725 * 305.06723 * 1 2 3 26 26 H 1.09002 * 109.47484 * 65.06636 * 1 2 3 27 27 H 0.97000 * 120.00131 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.59048 * 113.84344 * 15 14 12 29 29 H 1.09002 * 109.58453 * 353.41765 * 15 14 12 30 30 H 1.08999 * 109.46819 * 179.83709 * 18 16 15 31 31 H 1.08990 * 109.47183 * 299.84098 * 18 16 15 32 32 H 1.08998 * 109.46566 * 59.84031 * 18 16 15 33 33 H 1.08998 * 109.46063 * 301.34298 * 19 16 15 34 34 H 1.09003 * 109.45577 * 181.38390 * 19 16 15 35 35 H 1.09005 * 109.47374 * 180.02562 * 21 20 19 36 36 H 1.09001 * 109.47567 * 300.06671 * 21 20 19 37 37 H 1.09005 * 109.46961 * 60.06535 * 21 20 19 38 38 H 1.08999 * 109.47187 * 299.93514 * 22 20 19 39 39 H 1.09003 * 109.47304 * 59.93000 * 22 20 19 40 40 H 1.08994 * 109.46928 * 179.97438 * 22 20 19 41 41 H 1.08998 * 109.63343 * 6.59818 * 23 14 12 42 42 H 1.09004 * 109.57791 * 246.14775 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4826 7 7 0.9428 0.8296 2.6035 8 14 2.3227 -1.1197 4.0078 9 1 3.6307 -0.5443 4.4117 10 1 1.3446 -0.9492 5.1122 11 1 2.4881 -2.5655 3.7120 12 6 2.0323 -0.7103 -1.2306 13 8 2.1530 -1.9171 -1.2273 14 7 2.3474 -0.0045 -2.3346 15 6 2.0961 1.4418 -2.3957 16 6 1.2675 1.7459 -3.6478 17 1 0.2842 1.2852 -3.5540 18 6 1.1103 3.2601 -3.8008 19 6 1.9819 1.1797 -4.8772 20 6 2.1103 -0.3392 -4.7401 21 6 0.7188 -0.9582 -4.5941 22 6 2.7944 -0.9081 -5.9848 23 6 2.9486 -0.6676 -3.5007 24 1 -0.3633 -1.0236 0.0908 25 1 -0.3633 0.5905 0.8412 26 1 -0.3634 0.4332 -0.9319 27 1 0.7082 1.1607 3.4845 28 1 3.0449 1.9758 -2.4468 29 1 1.5456 1.7547 -1.5084 30 1 0.5232 3.4761 -4.6934 31 1 0.6017 3.6629 -2.9250 32 1 2.0942 3.7200 -3.8930 33 1 2.9747 1.6224 -4.9563 34 1 1.4066 1.4162 -5.7723 35 1 0.8108 -2.0399 -4.4961 36 1 0.2318 -0.5526 -3.7073 37 1 0.1223 -0.7233 -5.4757 38 1 2.1982 -0.6732 -6.8665 39 1 3.7856 -0.4668 -6.0884 40 1 2.8860 -1.9898 -5.8865 41 1 2.9605 -1.7460 -3.3429 42 1 3.9670 -0.3056 -3.6419 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597496911.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:18 Heat of formation + Delta-G solvation = -78.682655 kcal Electronic energy + Delta-G solvation = -20292.219039 eV Core-core repulsion = 17463.474137 eV Total energy + Delta-G solvation = -2828.744902 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.45111 -39.15302 -35.96940 -35.27750 -34.34241 -32.43839 -28.26302 -27.85287 -27.52187 -27.30545 -26.59894 -23.82882 -21.68177 -20.36713 -19.31393 -18.46554 -17.78260 -17.01338 -16.26155 -16.18217 -15.82697 -15.34838 -14.95538 -14.76819 -14.40679 -14.30908 -13.87242 -13.50024 -13.18841 -13.03047 -12.98057 -12.86535 -12.79498 -12.67073 -12.62585 -12.49200 -12.29831 -12.18239 -12.08863 -11.78116 -11.69553 -11.24798 -11.15617 -11.03010 -10.61341 -10.19974 -9.43495 -8.18149 -6.28865 1.38489 1.39762 1.51387 1.91123 2.21647 2.45195 3.11232 3.63046 3.81222 3.86700 3.98202 4.16112 4.22956 4.39470 4.52629 4.62483 4.66954 4.70874 4.73211 4.76432 4.86418 4.87307 4.93908 4.94943 4.97865 5.01240 5.12587 5.13388 5.15293 5.27611 5.35896 5.37990 5.42805 5.49378 5.59490 5.65661 5.77333 5.89583 6.16263 6.60740 6.76003 7.35767 7.50331 8.88090 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.030305 B = 0.006261 C = 0.005633 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 923.722648 B = 4471.328815 C = 4969.861566 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.029 3.971 3 H 0.044 0.956 4 C -0.530 4.530 5 H 0.039 0.961 6 C 0.023 3.977 7 N -0.908 5.908 8 Si 0.956 3.044 9 H -0.270 1.270 10 H -0.273 1.273 11 H -0.281 1.281 12 C 0.522 3.478 13 O -0.595 6.595 14 N -0.615 5.615 15 C 0.106 3.894 16 C -0.105 4.105 17 H 0.064 0.936 18 C -0.138 4.138 19 C -0.094 4.094 20 C -0.075 4.075 21 C -0.135 4.135 22 C -0.132 4.132 23 C 0.115 3.885 24 H 0.016 0.984 25 H 0.074 0.926 26 H 0.037 0.963 27 H 0.267 0.733 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.036 0.964 36 H 0.035 0.965 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.067 0.933 40 H 0.049 0.951 41 H 0.059 0.941 42 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.152 5.808 -17.079 18.076 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.008 3.992 3 H 0.062 0.938 4 C -0.568 4.568 5 H 0.057 0.943 6 C -0.177 4.177 7 N -0.547 5.547 8 Si 0.781 3.219 9 H -0.195 1.195 10 H -0.198 1.198 11 H -0.207 1.207 12 C 0.314 3.686 13 O -0.475 6.475 14 N -0.347 5.347 15 C -0.016 4.016 16 C -0.124 4.124 17 H 0.082 0.918 18 C -0.196 4.196 19 C -0.131 4.131 20 C -0.076 4.076 21 C -0.192 4.192 22 C -0.190 4.190 23 C -0.007 4.007 24 H 0.035 0.965 25 H 0.093 0.907 26 H 0.056 0.944 27 H 0.076 0.924 28 H 0.094 0.906 29 H 0.094 0.906 30 H 0.091 0.909 31 H 0.071 0.929 32 H 0.085 0.915 33 H 0.094 0.906 34 H 0.103 0.897 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.141 5.298 -16.935 17.781 hybrid contribution 0.217 -0.770 1.309 1.534 sum 1.358 4.529 -15.626 16.326 Atomic orbital electron populations 1.21464 0.95638 0.99425 1.00410 1.18820 0.94776 0.96126 0.89482 0.93791 1.21150 1.32115 1.12275 0.91309 0.94305 1.25580 0.95048 0.95707 1.01323 1.69946 1.36817 1.23450 1.24460 0.85588 0.78624 0.78626 0.79026 1.19491 1.19763 1.20673 1.21621 0.74977 0.87168 0.84882 1.90480 1.55960 1.16822 1.84273 1.48246 1.62410 1.09611 1.14441 1.22008 1.00570 0.79177 0.99820 1.21539 0.98886 0.97747 0.94242 0.91795 1.21718 1.02668 0.92856 1.02352 1.21616 1.01445 0.92540 0.97489 1.20908 0.95199 0.97011 0.94461 1.21817 0.96577 0.99426 1.01385 1.21754 1.00898 1.00487 0.95832 1.21746 0.96403 0.97712 0.84857 0.96502 0.90714 0.94361 0.92414 0.90612 0.90556 0.90881 0.92913 0.91513 0.90620 0.89688 0.94529 0.94596 0.90702 0.90657 0.91368 0.93209 0.92260 0.90865 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.53 8.77 71.98 0.63 -4.90 16 2 C 0.03 1.52 1.84 -12.29 -0.02 1.50 16 3 H 0.04 2.30 6.19 -2.38 -0.01 2.29 16 4 C -0.53 -31.55 8.32 25.60 0.21 -31.34 16 5 H 0.04 2.46 7.25 -2.91 -0.02 2.44 16 6 C 0.02 1.31 5.30 84.65 0.45 1.76 16 7 N -0.91 -51.37 11.37 21.45 0.24 -51.12 16 8 Si 0.96 45.36 29.54 68.60 2.03 47.38 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 11 H -0.28 -13.67 7.11 99.48 0.71 -12.96 16 12 C 0.52 25.61 6.68 87.66 0.59 26.20 16 13 O -0.59 -33.52 15.53 -3.03 -0.05 -33.57 16 14 N -0.61 -23.04 2.41 -818.72 -1.97 -25.01 16 15 C 0.11 3.24 5.44 86.36 0.47 3.71 16 16 C -0.10 -2.42 2.53 -10.71 -0.03 -2.45 16 17 H 0.06 1.68 6.33 -2.39 -0.02 1.66 16 18 C -0.14 -2.46 9.20 71.98 0.66 -1.80 16 19 C -0.09 -1.78 3.99 30.62 0.12 -1.66 16 20 C -0.07 -1.74 0.77 -52.11 -0.04 -1.78 16 21 C -0.13 -3.56 7.98 71.98 0.57 -2.99 16 22 C -0.13 -2.33 8.48 71.98 0.61 -1.72 16 23 C 0.12 3.62 5.12 86.35 0.44 4.06 16 24 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 25 H 0.07 3.93 6.22 -2.39 -0.01 3.92 16 26 H 0.04 1.62 8.12 -2.39 -0.02 1.60 16 27 H 0.27 14.20 8.31 -92.71 -0.77 13.42 16 28 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 29 H 0.08 2.66 5.51 -2.39 -0.01 2.64 16 30 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.04 1.06 8.14 -2.38 -0.02 1.04 16 36 H 0.03 1.13 5.97 -2.39 -0.01 1.11 16 37 H 0.07 1.56 8.14 -2.38 -0.02 1.54 16 38 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.06 2.20 7.00 -2.39 -0.02 2.19 16 42 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -68.36 321.34 5.89 -62.48 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: 0.97 Total: 11.25 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: 4.67 Total: -11.41 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -1.73 Total: -76.14 kcal Atomic # 8 Polarization: -33.52 SS G_CDS: -0.05 Total: -33.57 kcal Atomic # 14 Polarization: 45.36 SS G_CDS: 2.03 Total: 47.38 kcal Total: -68.36 5.89 -62.48 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597496911.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.207 kcal (2) G-P(sol) polarization free energy of solvation -68.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.476 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds