Wall clock time and date at job start Mon Mar 30 2020 07:15:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47065 * 2 1 4 4 C 1.50692 * 109.47091 * 239.99924 * 2 1 3 5 5 H 1.08007 * 120.00036 * 239.99954 * 4 2 1 6 6 C 1.37878 * 120.00060 * 60.00400 * 4 2 1 7 7 N 1.31514 * 119.99815 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99778 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47450 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47174 * 119.99918 * 8 6 4 11 11 H 1.48499 * 109.47104 * 239.99828 * 8 6 4 12 12 C 1.50699 * 109.46678 * 119.99933 * 2 1 3 13 13 O 1.21281 * 119.99884 * 102.66254 * 12 2 1 14 14 N 1.34778 * 120.00326 * 282.65422 * 12 2 1 15 15 C 1.46930 * 120.62864 * 354.79492 * 14 12 2 16 16 C 1.53191 * 108.77717 * 233.62599 * 15 14 12 17 17 H 1.09003 * 109.49284 * 65.31554 * 16 15 14 18 18 C 1.52996 * 109.49864 * 185.41164 * 16 15 14 19 19 C 1.53033 * 109.31366 * 305.36901 * 16 15 14 20 20 C 1.53042 * 109.54102 * 61.36190 * 19 16 15 21 21 C 1.53000 * 109.49548 * 58.58742 * 20 19 16 22 22 C 1.52999 * 109.49696 * 178.65337 * 20 19 16 23 23 C 1.46996 * 120.61923 * 174.81696 * 14 12 2 24 24 H 1.09000 * 109.47103 * 173.25310 * 1 2 3 25 25 H 1.09004 * 109.47548 * 293.25292 * 1 2 3 26 26 H 1.09000 * 109.47354 * 53.25544 * 1 2 3 27 27 H 0.97006 * 119.99272 * 180.02562 * 7 6 4 28 28 H 1.09006 * 109.58520 * 113.84142 * 15 14 12 29 29 H 1.09003 * 109.70519 * 353.48949 * 15 14 12 30 30 H 1.09000 * 109.47096 * 179.84249 * 18 16 15 31 31 H 1.09001 * 109.47146 * 299.84254 * 18 16 15 32 32 H 1.09006 * 109.46896 * 59.84115 * 18 16 15 33 33 H 1.09004 * 109.45941 * 301.34160 * 19 16 15 34 34 H 1.09001 * 109.46312 * 181.38273 * 19 16 15 35 35 H 1.09003 * 109.47122 * 180.02562 * 21 20 19 36 36 H 1.08996 * 109.46955 * 300.06298 * 21 20 19 37 37 H 1.08997 * 109.47495 * 60.06686 * 21 20 19 38 38 H 1.09006 * 109.47255 * 299.93515 * 22 20 19 39 39 H 1.08996 * 109.47381 * 59.93454 * 22 20 19 40 40 H 1.09006 * 109.47205 * 179.97438 * 22 20 19 41 41 H 1.09005 * 109.62234 * 6.59842 * 23 14 12 42 42 H 1.08995 * 109.58072 * 246.15508 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3226 -1.1196 -4.0078 9 1 3.1474 -2.2864 -3.6037 10 1 1.1679 -1.5866 -4.8165 11 1 3.1474 -0.1858 -4.8159 12 6 2.0322 -0.7104 1.2305 13 8 2.4514 -1.8454 1.1468 14 7 2.0157 -0.0845 2.4240 15 6 1.6187 1.3266 2.5238 16 6 2.7222 2.0990 3.2535 17 1 3.6292 2.0958 2.6488 18 6 2.2678 3.5413 3.4861 19 6 3.0037 1.4285 4.6000 20 6 3.4898 -0.0038 4.3669 21 6 4.7527 0.0196 3.5036 22 6 3.8029 -0.6621 5.7121 23 6 2.3952 -0.8007 3.6503 24 1 -0.3633 -1.0205 -0.1207 25 1 -0.3634 0.4057 0.9442 26 1 -0.3634 0.6148 -0.8235 27 1 0.7083 1.1609 -3.4844 28 1 0.6865 1.4053 3.0833 29 1 1.4815 1.7413 1.5251 30 1 3.0522 4.0896 4.0078 31 1 2.0675 4.0184 2.5268 32 1 1.3601 3.5433 4.0896 33 1 2.0902 1.4098 5.1944 34 1 3.7714 1.9904 5.1320 35 1 5.0982 -1.0007 3.3374 36 1 4.5291 0.4886 2.5454 37 1 5.5309 0.5876 4.0133 38 1 4.5810 -0.0941 6.2222 39 1 2.9030 -0.6785 6.3268 40 1 4.1486 -1.6824 5.5457 41 1 2.7722 -1.7908 3.3942 42 1 1.5264 -0.8955 4.3016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597496912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:22 Heat of formation + Delta-G solvation = -61.455516 kcal Electronic energy + Delta-G solvation = -20283.131576 eV Core-core repulsion = 17455.133698 eV Total energy + Delta-G solvation = -2827.997877 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.02501 -37.58228 -34.39443 -33.55200 -33.01760 -30.39128 -27.21704 -26.63639 -26.57685 -25.17453 -25.11213 -22.00471 -20.60795 -18.81444 -18.09047 -16.45391 -15.84040 -15.27150 -15.07772 -14.69162 -14.38415 -14.12947 -13.48116 -13.15157 -13.05580 -12.76888 -12.46612 -12.19089 -12.09058 -11.86101 -11.70314 -11.45385 -11.37024 -11.22763 -10.95841 -10.79043 -10.70631 -10.61282 -10.47259 -10.21650 -10.18686 -10.06669 -9.93340 -8.90526 -8.52953 -8.26121 -7.93682 -6.01356 -4.03274 3.33431 3.40919 3.48996 3.72269 3.77952 4.48783 4.69485 4.85122 4.90777 5.04843 5.31665 5.32640 5.44887 5.53233 5.64168 5.67637 5.72816 5.74893 5.79461 5.89763 5.94062 5.98843 6.05991 6.15968 6.17662 6.21163 6.26659 6.32403 6.39912 6.50999 6.64858 6.70634 6.87556 7.00014 7.20722 7.49896 7.78366 8.01988 8.14660 8.44354 9.04283 9.29375 9.61718 11.06796 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.027639 B = 0.006395 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.811711 B = 4377.543840 C = 4804.058325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.031 3.969 3 H 0.048 0.952 4 C -0.499 4.499 5 H 0.071 0.929 6 C 0.059 3.941 7 N -0.896 5.896 8 Si 0.898 3.102 9 H -0.272 1.272 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.523 3.477 13 O -0.548 6.548 14 N -0.624 5.624 15 C 0.115 3.885 16 C -0.112 4.112 17 H 0.079 0.921 18 C -0.143 4.143 19 C -0.099 4.099 20 C -0.081 4.081 21 C -0.137 4.137 22 C -0.137 4.137 23 C 0.121 3.879 24 H 0.034 0.966 25 H 0.012 0.988 26 H 0.089 0.911 27 H 0.260 0.740 28 H 0.057 0.943 29 H 0.097 0.903 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.059 0.941 35 H 0.053 0.947 36 H 0.063 0.937 37 H 0.048 0.952 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.056 0.944 41 H 0.087 0.913 42 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.460 4.588 14.856 15.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.010 3.990 3 H 0.066 0.934 4 C -0.537 4.537 5 H 0.090 0.910 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.726 3.274 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C 0.315 3.685 13 O -0.424 6.424 14 N -0.359 5.359 15 C -0.009 4.009 16 C -0.132 4.132 17 H 0.097 0.903 18 C -0.201 4.201 19 C -0.136 4.136 20 C -0.082 4.082 21 C -0.195 4.195 22 C -0.195 4.195 23 C -0.002 4.002 24 H 0.053 0.947 25 H 0.031 0.969 26 H 0.107 0.893 27 H 0.069 0.931 28 H 0.075 0.925 29 H 0.115 0.885 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.078 0.922 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.067 0.933 38 H 0.073 0.927 39 H 0.072 0.928 40 H 0.075 0.925 41 H 0.105 0.895 42 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 2.601 4.053 14.636 15.408 hybrid contribution 0.245 -0.307 -0.752 0.848 sum 2.846 3.746 13.884 14.659 Atomic orbital electron populations 1.21694 0.96262 1.01011 0.99582 1.18876 0.94187 0.96582 0.89387 0.93391 1.21170 1.30961 1.12515 0.89094 0.91047 1.24936 0.95134 0.95058 0.99045 1.69897 1.37197 1.23140 1.23365 0.86427 0.78647 0.79792 0.82578 1.19604 1.21026 1.21078 1.21978 0.75651 0.86700 0.84172 1.90512 1.46580 1.19777 1.85488 1.48298 1.69099 1.11525 1.06967 1.21763 0.95789 0.81064 1.02256 1.21601 0.99854 0.94751 0.96953 0.90309 1.21754 1.00969 0.95505 1.01898 1.21610 1.00674 0.94644 0.96705 1.20917 0.96208 0.95631 0.95396 1.21837 0.95846 1.01778 1.00000 1.21793 1.01190 1.00573 0.95945 1.21493 0.95914 0.96764 0.86051 0.94719 0.96894 0.89258 0.93069 0.92470 0.88491 0.92789 0.92179 0.92763 0.92133 0.92182 0.92830 0.91831 0.93295 0.92678 0.92766 0.92536 0.89491 0.92766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.03 8.66 37.16 0.32 -2.71 16 2 C 0.03 0.77 1.79 -92.93 -0.17 0.61 16 3 H 0.05 1.23 6.47 -51.93 -0.34 0.89 16 4 C -0.50 -14.34 8.35 -34.44 -0.29 -14.62 16 5 H 0.07 2.18 6.89 -52.48 -0.36 1.82 16 6 C 0.06 1.65 5.30 -17.82 -0.09 1.55 16 7 N -0.90 -25.25 11.40 55.43 0.63 -24.61 16 8 Si 0.90 22.00 29.54 -169.99 -5.02 16.97 16 9 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.28 -6.87 7.11 56.52 0.40 -6.46 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 C 0.52 12.30 6.86 -10.99 -0.08 12.22 16 13 O -0.55 -14.63 15.05 5.56 0.08 -14.55 16 14 N -0.62 -11.49 2.41 -172.71 -0.42 -11.91 16 15 C 0.11 1.78 4.80 -3.71 -0.02 1.76 16 16 C -0.11 -1.44 2.53 -90.51 -0.23 -1.67 16 17 H 0.08 1.12 6.33 -51.93 -0.33 0.80 16 18 C -0.14 -1.52 9.20 37.16 0.34 -1.18 16 19 C -0.10 -1.14 3.99 -26.69 -0.11 -1.24 16 20 C -0.08 -1.03 0.77 -154.39 -0.12 -1.15 16 21 C -0.14 -1.94 7.99 37.16 0.30 -1.64 16 22 C -0.14 -1.44 8.48 37.16 0.32 -1.12 16 23 C 0.12 1.92 5.12 -3.68 -0.02 1.90 16 24 H 0.03 0.85 8.14 -51.93 -0.42 0.42 16 25 H 0.01 0.25 7.30 -51.93 -0.38 -0.13 16 26 H 0.09 2.28 6.28 -51.93 -0.33 1.95 16 27 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 29 H 0.10 1.67 5.37 -51.93 -0.28 1.40 16 30 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 33 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 34 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.06 1.04 5.97 -51.93 -0.31 0.73 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.09 1.56 7.00 -51.93 -0.36 1.20 16 42 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 LS Contribution 319.33 15.07 4.81 4.81 Total: -1.00 -30.56 319.33 -7.06 -37.63 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -7.31 Total: -1.03 kcal Atomic # 6 Polarization: -7.47 SS G_CDS: 0.16 Total: -7.31 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.22 Total: -36.53 kcal Atomic # 8 Polarization: -14.63 SS G_CDS: 0.08 Total: -14.55 kcal Atomic # 14 Polarization: 22.00 SS G_CDS: -5.02 Total: 16.97 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.56 -7.06 -37.63 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597496912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.828 kcal (2) G-P(sol) polarization free energy of solvation -30.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.456 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds