Wall clock time and date at job start Mon Mar 30 2020 07:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08999 * 109.47065 * 2 1 4 4 C 1.50692 * 109.47091 * 239.99924 * 2 1 3 5 5 H 1.08007 * 120.00036 * 239.99954 * 4 2 1 6 6 C 1.37878 * 120.00060 * 60.00400 * 4 2 1 7 7 N 1.31514 * 119.99815 * 359.97438 * 6 4 2 8 8 Si 1.86801 * 119.99778 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47450 * 0.02562 * 8 6 4 10 10 H 1.48502 * 109.47174 * 119.99918 * 8 6 4 11 11 H 1.48499 * 109.47104 * 239.99828 * 8 6 4 12 12 C 1.50699 * 109.46678 * 119.99933 * 2 1 3 13 13 O 1.21281 * 119.99884 * 102.66254 * 12 2 1 14 14 N 1.34778 * 120.00326 * 282.65422 * 12 2 1 15 15 C 1.46930 * 120.62864 * 354.79492 * 14 12 2 16 16 C 1.53191 * 108.77717 * 233.62599 * 15 14 12 17 17 H 1.09003 * 109.49284 * 65.31554 * 16 15 14 18 18 C 1.52996 * 109.49864 * 185.41164 * 16 15 14 19 19 C 1.53033 * 109.31366 * 305.36901 * 16 15 14 20 20 C 1.53042 * 109.54102 * 61.36190 * 19 16 15 21 21 C 1.53000 * 109.49548 * 58.58742 * 20 19 16 22 22 C 1.52999 * 109.49696 * 178.65337 * 20 19 16 23 23 C 1.46996 * 120.61923 * 174.81696 * 14 12 2 24 24 H 1.09000 * 109.47103 * 173.25310 * 1 2 3 25 25 H 1.09004 * 109.47548 * 293.25292 * 1 2 3 26 26 H 1.09000 * 109.47354 * 53.25544 * 1 2 3 27 27 H 0.97006 * 119.99272 * 180.02562 * 7 6 4 28 28 H 1.09006 * 109.58520 * 113.84142 * 15 14 12 29 29 H 1.09003 * 109.70519 * 353.48949 * 15 14 12 30 30 H 1.09000 * 109.47096 * 179.84249 * 18 16 15 31 31 H 1.09001 * 109.47146 * 299.84254 * 18 16 15 32 32 H 1.09006 * 109.46896 * 59.84115 * 18 16 15 33 33 H 1.09004 * 109.45941 * 301.34160 * 19 16 15 34 34 H 1.09001 * 109.46312 * 181.38273 * 19 16 15 35 35 H 1.09003 * 109.47122 * 180.02562 * 21 20 19 36 36 H 1.08996 * 109.46955 * 300.06298 * 21 20 19 37 37 H 1.08997 * 109.47495 * 60.06686 * 21 20 19 38 38 H 1.09006 * 109.47255 * 299.93515 * 22 20 19 39 39 H 1.08996 * 109.47381 * 59.93454 * 22 20 19 40 40 H 1.09006 * 109.47205 * 179.97438 * 22 20 19 41 41 H 1.09005 * 109.62234 * 6.59842 * 23 14 12 42 42 H 1.08995 * 109.58072 * 246.15508 * 23 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5885 -1.1313 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6033 8 14 2.3226 -1.1196 -4.0078 9 1 3.1474 -2.2864 -3.6037 10 1 1.1679 -1.5866 -4.8165 11 1 3.1474 -0.1858 -4.8159 12 6 2.0322 -0.7104 1.2305 13 8 2.4514 -1.8454 1.1468 14 7 2.0157 -0.0845 2.4240 15 6 1.6187 1.3266 2.5238 16 6 2.7222 2.0990 3.2535 17 1 3.6292 2.0958 2.6488 18 6 2.2678 3.5413 3.4861 19 6 3.0037 1.4285 4.6000 20 6 3.4898 -0.0038 4.3669 21 6 4.7527 0.0196 3.5036 22 6 3.8029 -0.6621 5.7121 23 6 2.3952 -0.8007 3.6503 24 1 -0.3633 -1.0205 -0.1207 25 1 -0.3634 0.4057 0.9442 26 1 -0.3634 0.6148 -0.8235 27 1 0.7083 1.1609 -3.4844 28 1 0.6865 1.4053 3.0833 29 1 1.4815 1.7413 1.5251 30 1 3.0522 4.0896 4.0078 31 1 2.0675 4.0184 2.5268 32 1 1.3601 3.5433 4.0896 33 1 2.0902 1.4098 5.1944 34 1 3.7714 1.9904 5.1320 35 1 5.0982 -1.0007 3.3374 36 1 4.5291 0.4886 2.5454 37 1 5.5309 0.5876 4.0133 38 1 4.5810 -0.0941 6.2222 39 1 2.9030 -0.6785 6.3268 40 1 4.1486 -1.6824 5.5457 41 1 2.7722 -1.7908 3.3942 42 1 1.5264 -0.8955 4.3016 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597496912.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:21 Heat of formation + Delta-G solvation = -78.717006 kcal Electronic energy + Delta-G solvation = -20283.880090 eV Core-core repulsion = 17455.133698 eV Total energy + Delta-G solvation = -2828.746392 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 253.178 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.44662 -39.15014 -35.98225 -35.26250 -34.35152 -32.41628 -28.27518 -27.82291 -27.52394 -27.24308 -26.59873 -23.84119 -21.66610 -20.34620 -19.37067 -18.44668 -17.65783 -17.02106 -16.24869 -16.19584 -15.97961 -15.33022 -14.83543 -14.70665 -14.54879 -14.27226 -13.87063 -13.50389 -13.17063 -13.02256 -12.97594 -12.86925 -12.78460 -12.69071 -12.58392 -12.49513 -12.29478 -12.21148 -12.03934 -11.77938 -11.65929 -11.24560 -11.15077 -10.99265 -10.60467 -10.20722 -9.42836 -8.17510 -6.27060 1.37031 1.38880 1.52366 1.91633 2.22420 2.45294 3.12100 3.63378 3.81155 3.86899 3.98479 4.16924 4.23306 4.39672 4.51937 4.62292 4.68613 4.72345 4.73150 4.76541 4.86527 4.89750 4.90135 4.96746 4.98237 5.01560 5.12683 5.13371 5.14960 5.27672 5.36223 5.38552 5.45084 5.49211 5.59424 5.70285 5.75062 5.93179 6.18292 6.61897 6.80412 7.38241 7.51822 8.89184 Molecular weight = 253.18amu Principal moments of inertia in cm(-1) A = 0.027639 B = 0.006395 C = 0.005827 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1012.811711 B = 4377.543840 C = 4804.058325 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C 0.029 3.971 3 H 0.041 0.959 4 C -0.530 4.530 5 H 0.042 0.958 6 C 0.022 3.978 7 N -0.909 5.909 8 Si 0.954 3.046 9 H -0.282 1.282 10 H -0.273 1.273 11 H -0.271 1.271 12 C 0.520 3.480 13 O -0.593 6.593 14 N -0.614 5.614 15 C 0.107 3.893 16 C -0.108 4.108 17 H 0.058 0.942 18 C -0.138 4.138 19 C -0.092 4.092 20 C -0.076 4.076 21 C -0.135 4.135 22 C -0.132 4.132 23 C 0.116 3.884 24 H 0.017 0.983 25 H 0.045 0.955 26 H 0.072 0.928 27 H 0.266 0.734 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.050 0.950 32 H 0.069 0.931 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.035 0.965 36 H 0.032 0.968 37 H 0.073 0.927 38 H 0.073 0.927 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.276 6.045 16.944 18.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.008 3.992 3 H 0.059 0.941 4 C -0.568 4.568 5 H 0.060 0.940 6 C -0.178 4.178 7 N -0.548 5.548 8 Si 0.780 3.220 9 H -0.207 1.207 10 H -0.198 1.198 11 H -0.196 1.196 12 C 0.311 3.689 13 O -0.473 6.473 14 N -0.346 5.346 15 C -0.015 4.015 16 C -0.127 4.127 17 H 0.076 0.924 18 C -0.195 4.195 19 C -0.130 4.130 20 C -0.077 4.077 21 C -0.193 4.193 22 C -0.189 4.189 23 C -0.007 4.007 24 H 0.036 0.964 25 H 0.064 0.936 26 H 0.091 0.909 27 H 0.075 0.925 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.069 0.931 32 H 0.088 0.912 33 H 0.097 0.903 34 H 0.101 0.899 35 H 0.054 0.946 36 H 0.051 0.949 37 H 0.092 0.908 38 H 0.092 0.908 39 H 0.089 0.911 40 H 0.068 0.932 41 H 0.077 0.923 42 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 2.404 5.562 16.764 17.825 hybrid contribution 0.305 -0.726 -1.375 1.584 sum 2.709 4.837 15.389 16.357 Atomic orbital electron populations 1.21489 0.95213 0.99696 1.00615 1.18773 0.95004 0.95857 0.89546 0.94094 1.21281 1.31802 1.12424 0.91329 0.93957 1.25576 0.95145 0.95724 1.01307 1.69961 1.37101 1.23488 1.24292 0.85562 0.78417 0.78589 0.79438 1.20680 1.19832 1.19636 1.21609 0.75760 0.86111 0.85414 1.90479 1.48881 1.21553 1.86407 1.48227 1.67375 1.12692 1.06314 1.22011 0.98130 0.79324 1.02006 1.21550 0.97843 0.96082 0.97249 0.92359 1.21713 1.02226 0.93585 1.01999 1.21604 1.02223 0.93216 0.95928 1.20916 0.94122 0.96627 0.95988 1.21819 0.97523 1.00717 0.99205 1.21751 1.02578 1.00178 0.94408 1.21745 0.97961 0.95790 0.85159 0.96385 0.93588 0.90944 0.92521 0.89978 0.90715 0.91067 0.93065 0.91177 0.90278 0.89897 0.94590 0.94885 0.90829 0.90796 0.91135 0.93240 0.92320 0.90409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.42 8.66 71.98 0.62 -4.80 16 2 C 0.03 1.53 1.79 -12.29 -0.02 1.51 16 3 H 0.04 2.18 6.47 -2.39 -0.02 2.17 16 4 C -0.53 -31.76 8.35 25.60 0.21 -31.54 16 5 H 0.04 2.73 6.89 -2.91 -0.02 2.71 16 6 C 0.02 1.25 5.30 84.65 0.45 1.70 16 7 N -0.91 -51.67 11.40 21.45 0.24 -51.42 16 8 Si 0.95 45.81 29.54 68.60 2.03 47.84 16 9 H -0.28 -13.89 7.11 99.48 0.71 -13.18 16 10 H -0.27 -12.57 7.11 99.48 0.71 -11.86 16 11 H -0.27 -12.37 7.11 99.48 0.71 -11.67 16 12 C 0.52 25.39 6.86 87.66 0.60 25.99 16 13 O -0.59 -33.46 15.05 -3.03 -0.05 -33.50 16 14 N -0.61 -22.65 2.41 -818.71 -1.97 -24.62 16 15 C 0.11 3.21 4.80 86.36 0.41 3.62 16 16 C -0.11 -2.55 2.53 -10.72 -0.03 -2.57 16 17 H 0.06 1.63 6.33 -2.39 -0.02 1.61 16 18 C -0.14 -2.49 9.20 71.98 0.66 -1.83 16 19 C -0.09 -1.77 3.99 30.62 0.12 -1.65 16 20 C -0.08 -1.78 0.77 -52.11 -0.04 -1.82 16 21 C -0.14 -3.75 7.99 71.98 0.57 -3.18 16 22 C -0.13 -2.32 8.48 71.98 0.61 -1.71 16 23 C 0.12 3.57 5.12 86.35 0.44 4.01 16 24 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 25 H 0.05 1.85 7.30 -2.39 -0.02 1.84 16 26 H 0.07 3.74 6.28 -2.39 -0.01 3.73 16 27 H 0.27 14.19 8.31 -92.70 -0.77 13.41 16 28 H 0.08 2.07 8.14 -2.38 -0.02 2.05 16 29 H 0.07 2.58 5.37 -2.39 -0.01 2.57 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 32 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 33 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 34 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 35 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.03 1.10 5.97 -2.39 -0.01 1.09 16 37 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 38 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 39 H 0.07 1.04 8.14 -2.39 -0.02 1.03 16 40 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 41 H 0.06 2.16 7.00 -2.38 -0.02 2.14 16 42 H 0.08 2.05 8.14 -2.39 -0.02 2.03 16 Total: -1.00 -68.97 319.33 5.85 -63.12 By element: Atomic # 1 Polarization: 9.89 SS G_CDS: 0.97 Total: 10.86 kcal Atomic # 6 Polarization: -16.90 SS G_CDS: 4.63 Total: -12.27 kcal Atomic # 7 Polarization: -74.32 SS G_CDS: -1.73 Total: -76.05 kcal Atomic # 8 Polarization: -33.46 SS G_CDS: -0.05 Total: -33.50 kcal Atomic # 14 Polarization: 45.81 SS G_CDS: 2.03 Total: 47.84 kcal Total: -68.97 5.85 -63.12 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597496912.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.598 kcal (2) G-P(sol) polarization free energy of solvation -68.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.847 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds